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Aliases for SBSN Gene

Aliases for SBSN Gene

  • Suprabasin 2 3 5
  • HLAR698 3
  • UNQ698 3

External Ids for SBSN Gene

Previous GeneCards Identifiers for SBSN Gene

  • GC19M040708
  • GC19M036014
  • GC19M032519
  • GC19M035766
  • GC19M035924

Summaries for SBSN Gene

GeneCards Summary for SBSN Gene

SBSN (Suprabasin) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SBSN Gene

Genomics for SBSN Gene

Regulatory Elements for SBSN Gene

Enhancers for SBSN Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around SBSN on UCSC Golden Path with GeneCards custom track

Genomic Location for SBSN Gene

35,523,367 bp from pter
35,528,351 bp from pter
4,985 bases
Minus strand

Genomic View for SBSN Gene

Genes around SBSN on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SBSN Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SBSN Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SBSN Gene

Proteins for SBSN Gene

  • Protein details for SBSN Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Protein Accession:
    Secondary Accessions:
    • A8K5J0
    • E9PBV3

    Protein attributes for SBSN Gene

    590 amino acids
    Molecular mass:
    60541 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for SBSN Gene


neXtProt entry for SBSN Gene

Proteomics data for SBSN Gene at MOPED

Post-translational modifications for SBSN Gene

  • Glycosylation at Thr 59
  • Modification sites at PhosphoSitePlus

Other Protein References for SBSN Gene

No data available for DME Specific Peptides for SBSN Gene

Domains & Families for SBSN Gene

Protein Domains for SBSN Gene


Suggested Antigen Peptide Sequences for SBSN Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SBSN: view

No data available for Gene Families and UniProtKB/Swiss-Prot for SBSN Gene

Function for SBSN Gene

Molecular function for SBSN Gene

UniProtKB/Swiss-Prot Induction:
Up-regulated in differentiating keratinocytes.

Phenotypes for SBSN Gene

genes like me logo Genes that share phenotypes with SBSN: view

Animal Model Products

  • Taconic Biosciences Mouse Models for SBSN

miRNA for SBSN Gene

miRTarBase miRNAs that target SBSN

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SBSN Gene

Localization for SBSN Gene

Subcellular locations from UniProtKB/Swiss-Prot for SBSN Gene


Subcellular locations from

Jensen Localization Image for SBSN Gene COMPARTMENTS Subcellular localization image for SBSN gene
Compartment Confidence
extracellular 5

No data available for Gene Ontology (GO) - Cellular Components for SBSN Gene

Pathways & Interactions for SBSN Gene

SuperPathways for SBSN Gene

No Data Available

Interacting Proteins for SBSN Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
Selected Interacting proteins: ENSP00000430242 for SBSN Gene via STRING

Symbol External ID(s) Details

Gene Ontology (GO) - Biological Process for SBSN Gene


No data available for Pathways by source and SIGNOR curated interactions for SBSN Gene

Drugs & Compounds for SBSN Gene

No Compound Related Data Available

Transcripts for SBSN Gene

Unigene Clusters for SBSN Gene

Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SBSN Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4
SP2: -

Relevant External Links for SBSN Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SBSN Gene

mRNA expression in normal human tissues for SBSN Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SBSN Gene

This gene is overexpressed in Skin - Sun Exposed (Lower leg) (x18.9), Skin - Not Sun Exposed (Suprapubic) (x16.1), Esophagus - Mucosa (x7.0), Vagina (x5.1), and Cervix - Ectocervix (x4.0).

Protein differential expression in normal tissues from HIPED for SBSN Gene

This gene is overexpressed in Cervix (56.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for SBSN Gene

SOURCE GeneReport for Unigene cluster for SBSN Gene Hs.433484

mRNA Expression by UniProt/SwissProt for SBSN Gene

Tissue specificity: Detected in thymus, uterus and esophagus.
genes like me logo Genes that share expression patterns with SBSN: view

Protein tissue co-expression partners for SBSN Gene

Primer Products

Orthologs for SBSN Gene

This gene was present in the common ancestor of mammals.

Orthologs for SBSN Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia SBSN 35
  • 81.27 (n)
  • 71.35 (a)
  • 69 (a)
(Canis familiaris)
Mammalia SBSN 35
  • 76.87 (n)
  • 68.85 (a)
  • 47 (a)
(Mus musculus)
Mammalia Sbsn 35
  • 72.44 (n)
  • 56.1 (a)
Sbsn 16
Sbsn 36
  • 49 (a)
(Rattus norvegicus)
Mammalia Sbsn 35
  • 75.61 (n)
  • 62.66 (a)
(Monodelphis domestica)
Mammalia -- 36
  • 63 (a)
-- 36
  • 51 (a)
(Ornithorhynchus anatinus)
Mammalia SBSN 36
  • 61 (a)
(Pan troglodytes)
Mammalia SBSN 36
  • 74 (a)
Species with no ortholog for SBSN:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SBSN Gene

Gene Tree for SBSN (if available)
Gene Tree for SBSN (if available)

Paralogs for SBSN Gene

No data available for Paralogs for SBSN Gene

Variants for SBSN Gene

Sequence variations from dbSNP and Humsavar for SBSN Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs10775583 - 35,527,026(+) GCCCC(C/G)CCTCC intron-variant, reference, missense
rs12982653 -- 35,527,721(+) CCAAA(A/C/T)CTCCC intron-variant, reference, synonymous-codon, missense, splice-donor-variant
rs12983545 -- 35,527,707(+) GGTGG(A/G)CTCCC intron-variant, reference, missense
rs12983833 -- 35,527,793(+) TTTCC(A/G)GCCTG intron-variant, reference, synonymous-codon
rs13345681 -- 35,522,961(+) atgtc(A/C)tgcag downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SBSN Gene

Variant ID Type Subtype PubMed ID
nsv833811 CNV Gain 17160897
nsv911628 CNV Loss 21882294
esv27260 CNV Loss 19812545
esv2718498 CNV Deletion 23290073
esv1366374 CNV Deletion 17803354
esv1003511 CNV Deletion 20482838

Variation tolerance for SBSN Gene

Residual Variation Intolerance Score: 82.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 9.39; 88.48% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for SBSN Gene

Disorders for SBSN Gene

Relevant External Links for SBSN

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SBSN Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SBSN Gene

Publications for SBSN Gene

  1. Suprabasin, a novel epidermal differentiation marker and potential cornified envelope precursor. (PMID: 12228223) Park G.T. … Morasso M.I. (J. Biol. Chem. 2002) 2 3 4 23 67
  2. Identification of novel keratinocyte-secreted peptides dermokine- alpha/-beta and a new stratified epithelium-secreted protein gene complex on human chromosome 19q13.1. (PMID: 15234001) Matsui T. … Tsukita S. (Genomics 2004) 3 23
  3. Identification of a conserved cluster of skin-specific genes encoding secreted proteins. (PMID: 15256262) Moffatt P. … LanctA't C. (Gene 2004) 3 23
  4. Quantitative Proteomics Reveals Dynamic Interactions of the Minichromosome Maintenance Complex (MCM) in the Cellular Response to Etoposide Induced DNA Damage. (PMID: 25963833) Drissi R. … Boisvert F.M. (Mol. Cell Proteomics 2015) 3
  5. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3

Products for SBSN Gene

Sources for SBSN Gene