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SBK2 Gene

protein-coding   GIFtS: 36
GCID: GC19M056041

SH3 Domain Binding Kinase Family, Member 2

(Previous names: SH3-binding domain kinase family, member 2)
  Search for SBK2
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
SH3 Domain Binding Kinase Family, Member 21 2     Serine/Threonine-Protein Kinase SBK22
SH3-Binding Domain Kinase Family, Member 21 2     SgK0693
SGK0692 3     SH3-Binding Domain Kinase Family Member 23
Sugen Kinase 692 3     EC 2.7.118
EC 2.7.11.13 8     

External Ids:    HGNC: 344161   Entrez Gene: 6466432   Ensembl: ENSG000001875507   UniProtKB: P0C2633   

Export aliases for SBK2 gene to outside databases

Previous GC identifers: GC19M060736 GC19M052354


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for SBK2 Gene:
SBK2 (SH3 domain binding kinase family, member 2) is a protein-coding gene. GO annotations related to this gene include protein serine/threonine kinase activity. An important paralog of this gene is SBK3.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000019.9  NT_011109.17  NC_018930.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the SBK2 gene promoter:
         SRF   MAZR   SRF (504 AA)   HSF1 (long)   PPAR-gamma1   FOXJ2 (long isoform)   HSF1short   PPAR-gamma2   ZID   FOXJ2   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for SBK2

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat SBK2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19q13.42   Ensembl cytogenetic band:  19q13.42   HGNC cytogenetic band: 19q13.42

SBK2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SBK2 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19M056041:  view genomic region     (about GC identifiers)

Start:
56,041,100 bp from pter      End:
56,048,456 bp from pter
Size:
7,357 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: SBK2_HUMAN, P0C263 (See protein sequence)
Recommended Name: Serine/threonine-protein kinase SBK2  
Size: 348 amino acids; 38088 Da

Explore the universe of human proteins at neXtProt for SBK2: NX_P0C263

Explore proteomics data for SBK2 at MOPED

2 DME Specific Peptides for SBK2 (P0C263)
 IPYTAPE  RDLKPEN 


See SBK2 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_001094871.2  
ENSEMBL proteins: 
 ENSP00000389015   ENSP00000345044  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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IUPHAR Guide to PHARMACOLOGY protein family classification: SH3-binding domain kinase family, member 2
NKF1 family

4 InterPro protein domains:
 IPR017441 Protein_kinase_ATP_BS
 IPR011009 Kinase-like_dom
 IPR008271 Ser/Thr_kinase_AS
 IPR000719 Prot_kinase_dom

Graphical View of Domain Structure for InterPro Entry P0C263

ProtoNet protein and cluster: P0C263

UniProtKB/Swiss-Prot: SBK2_HUMAN, P0C263
Similarity: Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. STKL subfamily
Similarity: Contains 1 protein kinase domain


Find genes that share domains with SBK2           About GenesLikeMe


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: SBK2_HUMAN, P0C263
Catalytic activity: ATP + a protein = ADP + a phosphoprotein

     Enzyme Numbers (IUBMB): EC 2.7.11.11 2 EC 2.7.112

     Gene Ontology (GO): 5 molecular function terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0004672protein kinase activity ----
GO:0004702receptor signaling protein serine/threonine kinase activity IBA--
GO:0004713protein tyrosine kinase activity ----
GO:0005524ATP binding IEA--
GO:0016772transferase activity, transferring phosphorus-containing groups ----
     
Find genes that share ontologies with SBK2           About GenesLikeMe


Phenotypes:
     1 GenomeRNAi human phenotype for SBK2:
 Synthetic lethal with Ras 

Animal Models:
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
cytosol2
endoplasmic reticulum1
extracellular1
mitochondrion1
nucleus1
peroxisome1
plasma membrane1

Gene Ontology (GO): 1 cellular component term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005737cytoplasm IBA--

Find genes that share ontologies with SBK2           About GenesLikeMe


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for SBK2
Interactions:

    Search GeneGlobe Interaction Network for SBK2

Gene Ontology (GO): 2 biological process terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0006468protein phosphorylation ----
GO:0023014signal transduction by phosphorylation IBA--

Find genes that share ontologies with SBK2           About GenesLikeMe



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for SBK2



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for SBK2 gene: 
NM_001101401.2  

Unigene Cluster for SBK2:

SH3-binding domain kinase family, member 2
Hs.532676  [show with all ESTs]
Unigene Representative Sequence: NM_001101401
2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000413299(uc010ygc.2) ENST00000344158
miRNA
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1 DOTS entry:

DT.102822142 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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SBK2 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: GCCTTCATCC
SBK2 Expression
About this image

SBK2 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

SBK2 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.532676
    Custom PCR Arrays for SBK2
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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SBK2

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of animals.

Orthologs for SBK2 gene from Selected species (see all 13)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Sbk21 , 5 SH3-binding domain kinase family, member 21, 5 79.44(n)1
81.84(a)1
  7 (2.87 cM)5
3818361  NM_001146329.11  NP_001139801.11 
 49561345 
chicken
(Gallus gallus)
Aves SBK21 SH3-binding domain kinase family, member 2 61.63(n)
56.04(a)
  420929  XM_419014.3  XP_419014.3 
lizard
(Anolis carolinensis)
Reptilia SBK26
SH3 domain binding kinase family, member 2
54(a)
1 ↔ 1
GL343253.1(1238570-1243986)
tropical clawed frog
(Xenopus tropicalis)
Amphibia LOC1004925571 serine/threonine-protein kinase SBK2-like 55.37(n)
52.35(a)
  100492557  XM_002938270.2  XP_002938316.1 
zebrafish
(Danio rerio)
Actinopterygii si:dkey-8e10.31 si:dkey-8e10.3 53.55(n)
44.84(a)
  100001826  XM_001341714.2  XP_001341750.1 
fruit fly
(Drosophila melanogaster)
Insecta CG112216
CG49456
--
19(a)
16(a)
many ↔ many
many ↔ many
2L(6742508-6755686)
2R(12453552-12457625)
worm
(Caenorhabditis elegans)
Secernentea C01C4.36
Protein C01C4.3, isoform b (C01C4.3) mRNA, complet...
19(a)
1 → many
X(3706742-3713331) WBGene00015293


ENSEMBL Gene Tree for SBK2 (if available)
TreeFam Gene Tree for SBK2 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for SBK2 gene
SBK32  SBK12  
3 SIMAP similar genes for SBK2 using alignment to 1 protein entry:     SBK2_HUMAN:
SBK1    SBK3    NUAK1

Find genes that share paralogs with SBK2           About GenesLikeMe



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for SBK2 (see all 318)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 19 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1386953041,2
--52363157(+) CCACCA/GTGTCT 1 -- us2k10--------
rs794911351,2
C,F--56040695(+) GATTTT/CGAGAC 1 -- ds50011Minor allele frequency- C:0.05WA 118
rs1409354951,2
C--56040731(+) GCACTC/GCAGCC 1 -- ds50010--------
rs718307991,2
C--56040963(+) CCTGCAGAG    
   AGG
/-
AGAGA
1 -- ds50011Minor allele frequency- -:0.50CSA 2
rs1852733241,2
C--56040988(+) ACGCCG/TAGGGG 1 -- ds50010--------
rs1999273621,2
--56041045(+) CGTTG-/AAGCCTT 1 -- ds50010--------
rs598764831,2
C--56041046(+) CGTTGG/ACCTTG 1 -- ds50014Minor allele frequency- A:0.32WA NA EA 360
rs599142071,2
C--56041047(+) GTTGGC/ACTTGG 1 -- ds50014Minor allele frequency- A:0.32WA NA EA 360
rs72572631,2
C,F--56041073(+) CGGCTT/GCCCTT 1 -- ds50012Minor allele frequency- G:0.06WA NA 238
rs1901563861,2
C--56041124(+) TCCACC/TGCTCC 2 A syn11Minor allele frequency- T:0.00EU 805

HapMap Linkage Disequilibrium report for SBK2 (56041100 - 56048456 bp)

Structural Variations
     Database of Genomic Variants (DGV) Selected variations for SBK2 (see all 13):    About this table    
Variant IDTypeSubtypePubMed ID
esv1510388CNV Deletion17803354
esv997838CNV Deletion20482838
esv4756CNV Deletion18987735
esv2718980CNV Deletion23290073
nsv912478CNV Loss21882294
nsv138153CNV Loss16902084
dgv4023n71CNV Loss21882294
dgv4025n71CNV Loss21882294
nsv912473CNV Loss21882294
esv7136CNV Loss19470904

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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  --

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for SBK2 gene integrated from 10 sources:
(articles sorted by number of sources associating them with SBK2)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Patterns of somatic mutation in human cancer genomes. (PubMed id 17344846)1, 2 Greenman C.... Stratton M.R. (Nature 2007)
  2. The DNA sequence and biology of human chromosome 19. (PubMed id 15057824)1, 2 Grimwood J.... Lucas S.M. (Nature 2004)
  3. The protein kinase complement of the human genome. (PubMed id 12471243)1, 2 Manning G.... Sudarsanam S. (Science 2002)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 646643 HGNC: 34416 Ensembl:ENSG00000187550 euGenes: HUgn646643 ECgene: SBK2
H-InvDB: SBK2

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for SBK2 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for SBK2 gene:
Search GeneIP for patents involving SBK2

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014

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