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Aliases for SBK1 Gene

Aliases for SBK1 Gene

  • SH3 Domain Binding Kinase 1 2 3
  • SH3-Binding Domain Kinase 1 2 3
  • EC 2.7.11.1 4 63
  • SH3-Binding Kinase 1 4
  • EC 2.7.11 63
  • SBK 3

External Ids for SBK1 Gene

Previous GeneCards Identifiers for SBK1 Gene

  • GC16P028160
  • GC16P026395

Summaries for SBK1 Gene

GeneCards Summary for SBK1 Gene

SBK1 (SH3 Domain Binding Kinase 1) is a Protein Coding gene. GO annotations related to this gene include transferase activity, transferring phosphorus-containing groups and protein tyrosine kinase activity. An important paralog of this gene is SBK2.

UniProtKB/Swiss-Prot for SBK1 Gene

  • May be involved in signal-transduction pathways related to the control of brain development.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SBK1 Gene

Genomics for SBK1 Gene

Regulatory Elements for SBK1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for SBK1 Gene

Chromosome:
16
Start:
28,258,703 bp from pter
End:
28,323,849 bp from pter
Size:
65,147 bases
Orientation:
Plus strand

Genomic View for SBK1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SBK1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SBK1 Gene

Proteins for SBK1 Gene

  • Protein details for SBK1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q52WX2-SBK1_HUMAN
    Recommended name:
    Serine/threonine-protein kinase SBK1
    Protein Accession:
    Q52WX2

    Protein attributes for SBK1 Gene

    Size:
    424 amino acids
    Molecular mass:
    46252 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SBK1 Gene

Proteomics data for SBK1 Gene at MOPED

Selected DME Specific Peptides for SBK1 Gene

Post-translational modifications for SBK1 Gene

  • Ubiquitination at Lys 176
  • Modification sites at PhosphoSitePlus

Other Protein References for SBK1 Gene

ENSEMBL proteins:
REFSEQ proteins:

Domains & Families for SBK1 Gene

Gene Families for SBK1 Gene

Suggested Antigen Peptide Sequences for SBK1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q52WX2

UniProtKB/Swiss-Prot:

SBK1_HUMAN :
  • Contains 1 protein kinase domain.
  • Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
Domain:
  • Contains 1 protein kinase domain.
Family:
  • Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
genes like me logo Genes that share domains with SBK1: view

Function for SBK1 Gene

Molecular function for SBK1 Gene

UniProtKB/Swiss-Prot CatalyticActivity:
ATP + a protein = ADP + a phosphoprotein
UniProtKB/Swiss-Prot Function:
May be involved in signal-transduction pathways related to the control of brain development.

Enzyme Numbers (IUBMB) for SBK1 Gene

Gene Ontology (GO) - Molecular Function for SBK1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004672 protein kinase activity --
GO:0004674 protein serine/threonine kinase activity IEA --
GO:0005524 ATP binding IEA --
genes like me logo Genes that share ontologies with SBK1: view
genes like me logo Genes that share phenotypes with SBK1: view

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SBK1

In Situ Assay Products

Flow Cytometry Products

No data available for Animal Models , Transcription Factor Targets and HOMER Transcription for SBK1 Gene

Localization for SBK1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SBK1 Gene

Cytoplasm.

Gene Ontology (GO) - Cellular Components for SBK1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with SBK1: view

No data available for Subcellular locations from COMPARTMENTS for SBK1 Gene

Pathways & Interactions for SBK1 Gene

SuperPathways for SBK1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SBK1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006468 protein phosphorylation IEA --
genes like me logo Genes that share ontologies with SBK1: view

No data available for Pathways by source and SIGNOR curated interactions for SBK1 Gene

Drugs & Compounds for SBK1 Gene

(1) Drugs for SBK1 Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Adenosine triphosphate Approved Nutra 0

(1) Additional Compounds for SBK1 Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
ADP
  • Adenosindiphosphorsaeure
  • Adenosine 5'-pyrophosphate
  • Adenosine diphosphate
  • Adenosine pyrophosphate
  • Adenosine-5'-diphosphate
Antagonist, Gating inhibitor 58-64-0
genes like me logo Genes that share compounds with SBK1: view

Transcripts for SBK1 Gene

mRNA/cDNA for SBK1 Gene

(2) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SBK1 Gene

SH3-binding domain kinase 1:
Representative Sequences:

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SBK1

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SBK1 Gene

No ASD Table

Relevant External Links for SBK1 Gene

GeneLoc Exon Structure for
SBK1
ECgene alternative splicing isoforms for
SBK1

Expression for SBK1 Gene

mRNA expression in normal human tissues for SBK1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SBK1 Gene

This gene is overexpressed in Brain - Cerebellum (x9.0) and Brain - Cerebellar Hemisphere (x6.6).

Protein differential expression in normal tissues from HIPED for SBK1 Gene

This gene is overexpressed in Cerebrospinal fluid (67.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for SBK1 Gene



SOURCE GeneReport for Unigene cluster for SBK1 Gene Hs.97837

genes like me logo Genes that share expression patterns with SBK1: view

Protein tissue co-expression partners for SBK1 Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for SBK1 Gene

Orthologs for SBK1 Gene

This gene was present in the common ancestor of animals.

Orthologs for SBK1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SBK1 35
  • 88.8 (n)
  • 93.89 (a)
SBK1 36
  • 82 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SBK1 35
  • 94.03 (n)
  • 98.42 (a)
SBK1 36
  • 81 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Sbk1 35
  • 87.61 (n)
  • 95.44 (a)
Sbk1 16
Sbk1 36
  • 92 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia SBK1 35
  • 99.11 (n)
  • 98.93 (a)
SBK1 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Sbk1 35
  • 87.37 (n)
  • 95.92 (a)
oppossum
(Monodelphis domestica)
Mammalia SBK1 36
  • 83 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SBK1 36
  • 76 (a)
OneToOne
chicken
(Gallus gallus)
Aves SBK1 35
  • 82.26 (n)
  • 80.1 (a)
SBK1 36
  • 74 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SBK1 36
  • 74 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100125030 35
  • 69.61 (n)
  • 76.1 (a)
Str.12367 35
zebrafish
(Danio rerio)
Actinopterygii si:ch211-183d21.3 35
  • 65.74 (n)
  • 68.31 (a)
SBK1 36
  • 58 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG11221 36
  • 23 (a)
ManyToMany
CG4945 36
  • 19 (a)
ManyToMany
worm
(Caenorhabditis elegans)
Secernentea C01C4.3 36
  • 23 (a)
OneToMany
Species with no ortholog for SBK1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SBK1 Gene

ENSEMBL:
Gene Tree for SBK1 (if available)
TreeFam:
Gene Tree for SBK1 (if available)

Paralogs for SBK1 Gene

Paralogs for SBK1 Gene

(6) SIMAP similar genes for SBK1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SBK1: view

Variants for SBK1 Gene

Sequence variations from dbSNP and Humsavar for SBK1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs1875219 -- 28,308,564(+) actat(A/G)ggcat intron-variant
rs2055390 -- 28,316,905(-) ACTGC(A/T)CCCGG intron-variant
rs2412052 -- 28,303,509(-) aaaaa(A/G)aaaaa intron-variant
rs2466825 -- 28,308,414(+) ccaaa(A/T)tgctg intron-variant
rs2650492 -- 28,322,090(+) CACCA(A/G)GGGGC utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for SBK1 Gene

Variant ID Type Subtype PubMed ID
dgv842e1 CNV Complex 17122850
dgv843e1 CNV Complex 17122850
nsv526174 CNV Gain 19592680
nsv516054 CNV Loss 19592680

Variation tolerance for SBK1 Gene

Residual Variation Intolerance Score: 38.61% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.53; 11.40% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SBK1 Gene

HapMap Linkage Disequilibrium report
SBK1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SBK1 Gene

Disorders for SBK1 Gene

Relevant External Links for SBK1

Genetic Association Database (GAD)
SBK1
Human Genome Epidemiology (HuGE) Navigator
SBK1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SBK1
genes like me logo Genes that share disorders with SBK1: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SBK1 Gene

Publications for SBK1 Gene

  1. Panorama of ancient metazoan macromolecular complexes. (PMID: 26344197) Wan C. … Emili A. (Nature 2015) 67
  2. Human SBK1 is dysregulated in multiple cancers and promotes survival of ovary cancer SK-OV-3 cells. (PMID: 21104019) Wang P. … Ma D. (Mol. Biol. Rep. 2011) 67
  3. Coeliac disease-associated risk variants in TNFAIP3 and REL implicate altered NF-kappaB signalling. (PMID: 19240061) Trynka G. … Wijmenga C. (Gut 2009) 67
  4. Identification of interaction partners for individual SH3 domains of Fas ligand associated members of the PCH protein family in T lymphocytes. (PMID: 19041431) Linkermann A. … Janssen O. (Biochim. Biophys. Acta 2009) 67
  5. Patterns of somatic mutation in human cancer genomes. (PMID: 17344846) Greenman C. … Stratton M.R. (Nature 2007) 67

Products for SBK1 Gene

Sources for SBK1 Gene

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