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Aliases for SBF2-AS1 Gene

Subcategory (RNA class) for SBF2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SBF2-AS1 Gene

  • SBF2 Antisense RNA 1 2 3 5
  • SBF2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SBF2-AS1 Gene

Summaries for SBF2-AS1 Gene

GeneCards Summary for SBF2-AS1 Gene

SBF2-AS1 (SBF2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SBF2-AS1 Gene

Genomics for SBF2-AS1 Gene

Regulatory Elements for SBF2-AS1 Gene

Enhancers for SBF2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F009751 1.8 FANTOM5 Ensembl ENCODE 10.4 +1.5 1477 15.9 HDGF PKNOX1 CREB3L1 MLX WRNIP1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 SBF2 SWAP70 TMEM9B-AS1 ENSG00000254397 RPL21P97 SBF2-AS1 ENSG00000238387 WEE1 CTR9 NRIP3
GH11F009773 1 Ensembl ENCODE 11.3 +17.1 17121 3.8 JUN PTRF CEBPG ZNF316 POLR2A RCOR1 MAFK EGR2 STAT1 GFI1B SBF2-AS1 SBF2 GC11M009781 PIR54730 LOC440028
GH11F009799 1.3 FANTOM5 Ensembl ENCODE 8.5 +44.3 44344 5.5 SOX13 BACH1 FEZF1 ZBTB40 ZNF644 ZNF121 ZNF316 GATA3 ZNF366 ZSCAN29 SBF2 LOC101928008 ENSG00000254865 SBF2-AS1 SWAP70 LOC105369149
GH11F009715 1.2 Ensembl ENCODE 7.3 -39.5 -39529 6.1 HDGF HDAC1 PKNOX1 CBX5 SCRT2 ZNF143 ETV6 CREM ZNF362 ZNF280D SWAP70 RPL21P97 SBF2-AS1 GC11P009745 RN7SKP50
GH11F009686 1.4 FANTOM5 Ensembl ENCODE 5.7 -67.8 -67802 8.0 HDGF PKNOX1 TBL1XR1 WRNIP1 JUN MAX CBX5 POLR2A EED ZNF143 SWAP70 RPL21P97 ENSG00000238387 WEE1 SBF2-AS1 LOC105376544 RN7SKP50 GC11P009745
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SBF2-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SBF2-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000558206 308 1201 HDGF WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF48 ZNF121 GLIS2 ZNF143

Genomic Location for SBF2-AS1 Gene

Chromosome:
11
Start:
9,758,292 bp from pter
End:
9,811,319 bp from pter
Size:
53,028 bases
Orientation:
Plus strand

Genomic View for SBF2-AS1 Gene

Genes around SBF2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SBF2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SBF2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SBF2-AS1 Gene

Proteins for SBF2-AS1 Gene

Post-translational modifications for SBF2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SBF2-AS1 Gene

Domains & Families for SBF2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SBF2-AS1 Gene

Function for SBF2-AS1 Gene

Phenotypes for SBF2-AS1 Gene

GenomeRNAi human phenotypes for SBF2-AS1:
genes like me logo Genes that share phenotypes with SBF2-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SBF2-AS1 Gene

Localization for SBF2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SBF2-AS1 Gene

Pathways & Interactions for SBF2-AS1 Gene

SuperPathways for SBF2-AS1 Gene

No Data Available

Interacting Proteins for SBF2-AS1 Gene

Gene Ontology (GO) - Biological Process for SBF2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SBF2-AS1 Gene

Transcripts for SBF2-AS1 Gene

mRNA/cDNA for SBF2-AS1 Gene

(3) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SBF2-AS1 Gene

SBF2 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SBF2-AS1 Gene

No ASD Table

Relevant External Links for SBF2-AS1 Gene

GeneLoc Exon Structure for
SBF2-AS1
ECgene alternative splicing isoforms for
SBF2-AS1

Expression for SBF2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SBF2-AS1 Gene

SOURCE GeneReport for Unigene cluster for SBF2-AS1 Gene:

Hs.632156
genes like me logo Genes that share expression patterns with SBF2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SBF2-AS1 Gene

Orthologs for SBF2-AS1 Gene

Evolution for SBF2-AS1 Gene

ENSEMBL:
Gene Tree for SBF2-AS1 (if available)
TreeFam:
Gene Tree for SBF2-AS1 (if available)

No data available for Orthologs for SBF2-AS1 Gene

Paralogs for SBF2-AS1 Gene

No data available for Paralogs for SBF2-AS1 Gene

Variants for SBF2-AS1 Gene

Sequence variations from dbSNP and Humsavar for SBF2-AS1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs879253988 Pathogenic 9,808,128(-) GCTTC(C/T)AGATG nc-transcript-variant, reference, stop-gained
rs876661288 Likely pathogenic 9,808,900(-) CACAA(A/G)TAAAC nc-transcript-variant, splice-donor-variant
rs368381654 Likely benign 9,808,180(+) AGGGA(C/T)GTCAC nc-transcript-variant, reference, synonymous-codon
rs146230559 Uncertain significance 9,785,298(+) GGGGA(A/T)CTCGA intron-variant, nc-transcript-variant, reference, missense
rs572571832 Uncertain significance 9,787,649(+) CTTGG(-/TTC)TTCTT intron-variant, nc-transcript-variant, cds-indel

Structural Variations from Database of Genomic Variants (DGV) for SBF2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1045550 CNV gain 25217958
nsv1053369 CNV gain 25217958
nsv1119860 CNV deletion 24896259
nsv1150006 CNV deletion 26484159
nsv39331 CNV deletion 16902084
nsv499766 OTHER inversion 21111241
nsv553468 CNV gain 21841781
nsv957841 CNV deletion 24416366
esv8918 CNV loss 19470904
esv3579359 CNV loss 25503493
esv2744098 CNV deletion 23290073
esv2744095 CNV deletion 23290073
esv2660590 CNV deletion 23128226
esv2514794 CNV deletion 19546169
esv2309802 CNV deletion 18987734
esv1086799 CNV deletion 17803354
dgv51e215 CNV deletion 23714750

Relevant External Links for SBF2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SBF2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SBF2-AS1 Gene

Disorders for SBF2-AS1 Gene

Relevant External Links for SBF2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SBF2-AS1

No disorders were found for SBF2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SBF2-AS1 Gene

Publications for SBF2-AS1 Gene

  1. High expression of long non-coding RNA SBF2-AS1 promotes proliferation in non-small cell lung cancer. (PMID: 27154193) Lv J. … Yin R. (J. Exp. Clin. Cancer Res. 2016) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for SBF2-AS1 Gene

Sources for SBF2-AS1 Gene

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