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Aliases for SBF1P1 Gene

Aliases for SBF1P1 Gene

  • SET Binding Factor 1 Pseudogene 1 2 3 5

External Ids for SBF1P1 Gene

Previous GeneCards Identifiers for SBF1P1 Gene

  • GC08U900659
  • GC08M056527
  • GC08M056362
  • GC08M051829

Summaries for SBF1P1 Gene

GeneCards Summary for SBF1P1 Gene

SBF1P1 (SET Binding Factor 1 Pseudogene 1) is a Pseudogene.

Additional gene information for SBF1P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SBF1P1 Gene

Genomics for SBF1P1 Gene

GeneHancer (GH) Regulatory Elements for SBF1P1 Gene

Promoters and enhancers for SBF1P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I055441 Enhancer 0.2 FANTOM5 0.4 +13.7 13707 0.3 XKR4 SBF1P1 GC08M055302
GH08I055439 Enhancer 0.2 FANTOM5 0.4 +15.4 15365 0 XKR4 SBF1P1 GC08M055302
GH08I055429 Enhancer 0.2 FANTOM5 0.3 +25.5 25536 0.1 SBF1P1 GC08M055302 XKR4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SBF1P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SBF1P1 Gene

Genomic Locations for SBF1P1 Gene
chr8:55,449,197-55,455,321
(GRCh38/hg38)
Size:
6,125 bases
Orientation:
Minus strand
chr8:56,361,757-56,367,881
(GRCh37/hg19)

Genomic View for SBF1P1 Gene

Genes around SBF1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SBF1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SBF1P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SBF1P1 Gene

Proteins for SBF1P1 Gene

Post-translational modifications for SBF1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SBF1P1 Gene

Domains & Families for SBF1P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SBF1P1 Gene

Function for SBF1P1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SBF1P1 Gene

Localization for SBF1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SBF1P1 Gene

Pathways & Interactions for SBF1P1 Gene

SuperPathways for SBF1P1 Gene

No Data Available

Interacting Proteins for SBF1P1 Gene

Gene Ontology (GO) - Biological Process for SBF1P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SBF1P1 Gene

Drugs & Compounds for SBF1P1 Gene

No Compound Related Data Available

Transcripts for SBF1P1 Gene

mRNA/cDNA for SBF1P1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SBF1P1 Gene

SET binding factor 1 pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SBF1P1 Gene

No ASD Table

Relevant External Links for SBF1P1 Gene

GeneLoc Exon Structure for
SBF1P1
ECgene alternative splicing isoforms for
SBF1P1

Expression for SBF1P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SBF1P1 Gene

mRNA differential expression in normal tissues according to GTEx for SBF1P1 Gene

This gene is overexpressed in Brain - Cerebellum (x5.0).

NURSA nuclear receptor signaling pathways regulating expression of SBF1P1 Gene:

SBF1P1

SOURCE GeneReport for Unigene cluster for SBF1P1 Gene:

Hs.729852
genes like me logo Genes that share expression patterns with SBF1P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SBF1P1 Gene

Orthologs for SBF1P1 Gene

Evolution for SBF1P1 Gene

ENSEMBL:
Gene Tree for SBF1P1 (if available)
TreeFam:
Gene Tree for SBF1P1 (if available)

No data available for Orthologs for SBF1P1 Gene

Paralogs for SBF1P1 Gene

No data available for Paralogs for SBF1P1 Gene

Variants for SBF1P1 Gene

Sequence variations from dbSNP and Humsavar for SBF1P1 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000145506 -- 55,451,464(-) C/G/T non_coding_transcript_variant
rs1000383103 -- 55,451,277(-) T/C non_coding_transcript_variant
rs1000390235 -- 55,455,178(-) C/T non_coding_transcript_variant
rs1000412671 -- 55,453,362(-) A/G non_coding_transcript_variant
rs1000465952 -- 55,450,351(-) G/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SBF1P1 Gene

Variant ID Type Subtype PubMed ID
nsv525982 CNV loss 19592680
nsv8348 CNV loss 18304495
nsv951431 CNV deletion 24416366

Additional Variant Information for SBF1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SBF1P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SBF1P1 Gene

Disorders for SBF1P1 Gene

Additional Disease Information for SBF1P1

No disorders were found for SBF1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SBF1P1 Gene

Publications for SBF1P1 Gene

  1. Genome-wide association study identifies a novel susceptibility gene for serum TSH levels in Chinese populations. (PMID: 24852370) Zhan M … China Consortium for Genetics of Autoimmune Thyroid Disease (Human molecular genetics 2014) 3 58

Products for SBF1P1 Gene

Sources for SBF1P1 Gene

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