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Aliases for SATB2-AS1 Gene

Subcategory (RNA class) for SATB2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SATB2-AS1 Gene

  • SATB2 Antisense RNA 1 2 3 5
  • SATB2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SATB2-AS1 Gene

Previous GeneCards Identifiers for SATB2-AS1 Gene

  • GC02P200323

Summaries for SATB2-AS1 Gene

GeneCards Summary for SATB2-AS1 Gene

SATB2-AS1 (SATB2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SATB2-AS1 Gene

Genomics for SATB2-AS1 Gene

Regulatory Elements for SATB2-AS1 Gene

Enhancers for SATB2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F199454 1.7 FANTOM5 Ensembl ENCODE 0.8 +1.6 1585 10.3 PKNOX1 MLX WRNIP1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 TYW5 C2orf69 SATB2 SATB2-AS1
GH02F199453 0.7 Ensembl 0.8 -4.6 -4600 0.2 PKNOX1 GFI1B BCL11B ZNF843 OSR2 CTBP1 ZNF366 SCRT2 WT1 TCF7L2 SATB2-AS1 GC02M199366
GH02F199430 1.1 Ensembl ENCODE 0.3 -25.1 -25077 3.4 PKNOX1 FEZF1 ETS1 FOS ZNF362 ZEB2 ZNF843 SMARCA4 PBX2 IKZF1 SATB2 SPATS2L SATB2-AS1 GC02M199366
GH02F199452 0.8 Ensembl 0.4 -5.2 -5181 0.6 PKNOX1 ZNF146 ZNF792 INSM2 ZNF384 FEZF1 BCL11B ZIC2 ZNF324 CTBP1 SATB2-AS1 GC02M199366
GH02F199369 0.6 ENCODE 0.2 -87.4 -87377 1.3 ATF3 SCRT2 CEBPB CEBPG WT1 ENSG00000257045 SATB2 GC02M199366 SATB2-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SATB2-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SATB2-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for SATB2-AS1 Gene

199,457,700 bp from pter
199,476,935 bp from pter
19,236 bases
Plus strand

Genomic View for SATB2-AS1 Gene

Genes around SATB2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SATB2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SATB2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SATB2-AS1 Gene

Proteins for SATB2-AS1 Gene

Post-translational modifications for SATB2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SATB2-AS1 Gene

Domains & Families for SATB2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SATB2-AS1 Gene

Function for SATB2-AS1 Gene

Phenotypes for SATB2-AS1 Gene

GenomeRNAi human phenotypes for SATB2-AS1:
genes like me logo Genes that share phenotypes with SATB2-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SATB2-AS1 Gene

Localization for SATB2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SATB2-AS1 Gene

Pathways & Interactions for SATB2-AS1 Gene

SuperPathways for SATB2-AS1 Gene

No Data Available

Interacting Proteins for SATB2-AS1 Gene

Gene Ontology (GO) - Biological Process for SATB2-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for SATB2-AS1 Gene

Transcripts for SATB2-AS1 Gene

mRNA/cDNA for SATB2-AS1 Gene

(1) REFSEQ mRNAs :
(8) Additional mRNA sequences :
(7) Selected AceView cDNA sequences:
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SATB2-AS1 Gene

SATB2 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SATB2-AS1 Gene

No ASD Table

Relevant External Links for SATB2-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SATB2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SATB2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SATB2-AS1 Gene

This gene is overexpressed in Colon - Transverse (x32.8).

SOURCE GeneReport for Unigene cluster for SATB2-AS1 Gene:

genes like me logo Genes that share expression patterns with SATB2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SATB2-AS1 Gene

Orthologs for SATB2-AS1 Gene

Evolution for SATB2-AS1 Gene

Gene Tree for SATB2-AS1 (if available)
Gene Tree for SATB2-AS1 (if available)

No data available for Orthologs for SATB2-AS1 Gene

Paralogs for SATB2-AS1 Gene

No data available for Paralogs for SATB2-AS1 Gene

Variants for SATB2-AS1 Gene

Sequence variations from dbSNP and Humsavar for SATB2-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs10166260 -- 199,472,414(+) TCTTT(C/T)GCTGG nc-transcript-variant, upstream-variant-2KB
rs10197323 -- 199,467,833(+) TGCCA(C/T)CTAAT intron-variant, upstream-variant-2KB
rs111728044 -- 199,468,640(+) TGAAT(C/T)AGCTC intron-variant
rs111882161 -- 199,467,677(+) CCCCA(C/T)CACAT intron-variant, upstream-variant-2KB
rs112541045 -- 199,470,049(+) TACCC(C/G)CTTCC intron-variant, nc-transcript-variant

Relevant External Links for SATB2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SATB2-AS1 Gene

Disorders for SATB2-AS1 Gene

Relevant External Links for SATB2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SATB2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SATB2-AS1 Gene

Publications for SATB2-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for SATB2-AS1 Gene

Sources for SATB2-AS1 Gene

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