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Aliases for SATB2-AS1 Gene

Subcategory (RNA class) for SATB2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SATB2-AS1 Gene

  • SATB2 Antisense RNA 1 2 3 5
  • SATB2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SATB2-AS1 Gene

Previous GeneCards Identifiers for SATB2-AS1 Gene

  • GC02P200323

Summaries for SATB2-AS1 Gene

GeneCards Summary for SATB2-AS1 Gene

SATB2-AS1 (SATB2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SATB2-AS1 Gene

Genomics for SATB2-AS1 Gene

Regulatory Elements for SATB2-AS1 Gene

Enhancers for SATB2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F199454 1.7 FANTOM5 Ensembl ENCODE 0.8 +1.6 1585 10.3 PKNOX1 MLX WRNIP1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 TYW5 C2orf69 SATB2 SATB2-AS1
GH02F199453 0.7 Ensembl 0.8 -4.6 -4600 0.2 PKNOX1 GFI1B BCL11B ZNF843 OSR2 CTBP1 ZNF366 SCRT2 WT1 TCF7L2 SATB2-AS1 GC02M199366
GH02F199430 1.1 Ensembl ENCODE 0.3 -25.1 -25077 3.4 PKNOX1 FEZF1 ETS1 FOS ZNF362 ZEB2 ZNF843 SMARCA4 PBX2 IKZF1 SATB2 SPATS2L SATB2-AS1 GC02M199366
GH02F199452 0.8 Ensembl 0.4 -5.2 -5181 0.6 PKNOX1 ZNF146 ZNF792 INSM2 ZNF384 FEZF1 BCL11B ZIC2 ZNF324 CTBP1 SATB2-AS1 GC02M199366
GH02F199369 0.6 ENCODE 0.2 -87.4 -87377 1.3 ATF3 SCRT2 CEBPB CEBPG WT1 ENSG00000257045 SATB2 GC02M199366 SATB2-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SATB2-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SATB2-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000306177 800 6200 PKNOX1 MLX WRNIP1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1

Genomic Location for SATB2-AS1 Gene

Chromosome:
2
Start:
199,457,700 bp from pter
End:
199,476,935 bp from pter
Size:
19,236 bases
Orientation:
Plus strand

Genomic View for SATB2-AS1 Gene

Genes around SATB2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SATB2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SATB2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SATB2-AS1 Gene

Proteins for SATB2-AS1 Gene

Post-translational modifications for SATB2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SATB2-AS1 Gene

Domains & Families for SATB2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SATB2-AS1 Gene

Function for SATB2-AS1 Gene

Phenotypes for SATB2-AS1 Gene

GenomeRNAi human phenotypes for SATB2-AS1:
genes like me logo Genes that share phenotypes with SATB2-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SATB2-AS1 Gene

Localization for SATB2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SATB2-AS1 Gene

Pathways & Interactions for SATB2-AS1 Gene

SuperPathways for SATB2-AS1 Gene

No Data Available

Interacting Proteins for SATB2-AS1 Gene

Gene Ontology (GO) - Biological Process for SATB2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SATB2-AS1 Gene

Transcripts for SATB2-AS1 Gene

mRNA/cDNA for SATB2-AS1 Gene

(1) REFSEQ mRNAs :
(8) Additional mRNA sequences :
(7) Selected AceView cDNA sequences:
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SATB2-AS1 Gene

SATB2 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SATB2-AS1 Gene

No ASD Table

Relevant External Links for SATB2-AS1 Gene

GeneLoc Exon Structure for
SATB2-AS1
ECgene alternative splicing isoforms for
SATB2-AS1

Expression for SATB2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SATB2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SATB2-AS1 Gene

This gene is overexpressed in Colon - Transverse (x32.8).

SOURCE GeneReport for Unigene cluster for SATB2-AS1 Gene:

Hs.721226
genes like me logo Genes that share expression patterns with SATB2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SATB2-AS1 Gene

Orthologs for SATB2-AS1 Gene

Evolution for SATB2-AS1 Gene

ENSEMBL:
Gene Tree for SATB2-AS1 (if available)
TreeFam:
Gene Tree for SATB2-AS1 (if available)

No data available for Orthologs for SATB2-AS1 Gene

Paralogs for SATB2-AS1 Gene

No data available for Paralogs for SATB2-AS1 Gene

Variants for SATB2-AS1 Gene

Sequence variations from dbSNP and Humsavar for SATB2-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs10166260 -- 199,472,414(+) TCTTT(C/T)GCTGG nc-transcript-variant, upstream-variant-2KB
rs10197323 -- 199,467,833(+) TGCCA(C/T)CTAAT intron-variant, upstream-variant-2KB
rs111728044 -- 199,468,640(+) TGAAT(C/T)AGCTC intron-variant
rs111882161 -- 199,467,677(+) CCCCA(C/T)CACAT intron-variant, upstream-variant-2KB
rs112541045 -- 199,470,049(+) TACCC(C/G)CTTCC intron-variant, nc-transcript-variant

Relevant External Links for SATB2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SATB2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SATB2-AS1 Gene

Disorders for SATB2-AS1 Gene

Relevant External Links for SATB2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SATB2-AS1

No disorders were found for SATB2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SATB2-AS1 Gene

Publications for SATB2-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for SATB2-AS1 Gene

Sources for SATB2-AS1 Gene

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