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Aliases for SASS6 Gene

Aliases for SASS6 Gene

  • SAS-6 Centriolar Assembly Protein 2 3 5
  • HsSAS-6 3 4
  • SAS6 3 4
  • Spindle Assembly 6 Homolog (C. Elegans) 2
  • Spindle Assembly 6 Homolog 3
  • MCPH14 3
  • SAS-6 3

External Ids for SASS6 Gene

Previous GeneCards Identifiers for SASS6 Gene

  • GC01M100263
  • GC01M100549
  • GC01M098671

Summaries for SASS6 Gene

Entrez Gene Summary for SASS6 Gene

  • SAS6 is necessary for centrosome duplication and functions during procentriole formation; SAS6 functions to ensure that each centriole seeds the formation of a single procentriole per cell cycle Strnad et al., (2007) [PubMed 17681132].[supplied by OMIM, Mar 2008]

GeneCards Summary for SASS6 Gene

SASS6 (SAS-6 Centriolar Assembly Protein) is a Protein Coding gene. Diseases associated with SASS6 include microcephaly 14, primary, autosomal recessive and autosomal recessive primary microcephaly.

UniProtKB/Swiss-Prot for SASS6 Gene

  • Central scaffolding component of the centrioles ensuring their 9-fold symmetry. Required for centrosome biogenesis and duplication: required both for mother-centriole-dependent centriole duplication and deuterosome-dependent centriole amplification in multiciliated cells. Overexpression results in excess foci-bearing centriolar markers.

Gene Wiki entry for SASS6 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SASS6 Gene

Genomics for SASS6 Gene

Regulatory Elements for SASS6 Gene

Promoters for SASS6 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SASS6 on UCSC Golden Path with GeneCards custom track

Genomic Location for SASS6 Gene

Chromosome:
1
Start:
100,083,544 bp from pter
End:
100,133,095 bp from pter
Size:
49,552 bases
Orientation:
Minus strand

Genomic View for SASS6 Gene

Genes around SASS6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SASS6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SASS6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SASS6 Gene

Proteins for SASS6 Gene

  • Protein details for SASS6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6UVJ0-SAS6_HUMAN
    Recommended name:
    Spindle assembly abnormal protein 6 homolog
    Protein Accession:
    Q6UVJ0
    Secondary Accessions:
    • D3DT55
    • Q8N3K0

    Protein attributes for SASS6 Gene

    Size:
    657 amino acids
    Molecular mass:
    74397 Da
    Quaternary structure:
    • Nine homodimers form a cartwheel structure with an internal diameter of 23 nM and radial spokes connecting to the microtubule triplets (By similarity). Part of a ternary complex composed of SASS6, CENPJ and CEP350. Interacts with FBXW5.

neXtProt entry for SASS6 Gene

Proteomics data for SASS6 Gene at MOPED

Post-translational modifications for SASS6 Gene

  • Ubiquitinated by the SCF(FBXW5) E3 ubiquitin-protein ligase complex during S phase, leading to its degradation and preventing centriole reduplication.
  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SASS6 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

No data available for DME Specific Peptides for SASS6 Gene

Domains & Families for SASS6 Gene

Protein Domains for SASS6 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q6UVJ0

UniProtKB/Swiss-Prot:

SAS6_HUMAN :
  • The 35 nM long coiled-coil domain mediates homodimerization while the globular N-terminus links the dimers at an angle of 40 degrees to form the inner ring.
Domain:
  • The 35 nM long coiled-coil domain mediates homodimerization while the globular N-terminus links the dimers at an angle of 40 degrees to form the inner ring.
  • Contains 1 PISA domain.
genes like me logo Genes that share domains with SASS6: view

No data available for Gene Families for SASS6 Gene

Function for SASS6 Gene

Molecular function for SASS6 Gene

UniProtKB/Swiss-Prot Function:
Central scaffolding component of the centrioles ensuring their 9-fold symmetry. Required for centrosome biogenesis and duplication: required both for mother-centriole-dependent centriole duplication and deuterosome-dependent centriole amplification in multiciliated cells. Overexpression results in excess foci-bearing centriolar markers.
genes like me logo Genes that share phenotypes with SASS6: view

Human Phenotype Ontology for SASS6 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Model Products

miRNA for SASS6 Gene

Inhibitory RNA Products

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targets and HOMER Transcription for SASS6 Gene

Localization for SASS6 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SASS6 Gene

Cytoplasm, cytoskeleton, microtubule organizing center, centrosome. Cytoplasm, cytoskeleton, microtubule organizing center, centrosome, centriole. Note=Component of the deuterosome, a structure that promotes de novo centriole amplification in multiciliated cells that can generate more than 100 centrioles (By similarity). Component of the centrosome. Associated only transiently with nascent procentrioles during centriole biogenesis. {ECO:0000250}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SASS6 Gene COMPARTMENTS Subcellular localization image for SASS6 gene
Compartment Confidence
cytoskeleton 5
cytosol 3
nucleus 2
peroxisome 1

No data available for Gene Ontology (GO) - Cellular Components for SASS6 Gene

Pathways & Interactions for SASS6 Gene

SuperPathways for SASS6 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SASS6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007099 centriole replication IMP 16244668
genes like me logo Genes that share ontologies with SASS6: view

No data available for Pathways by source and SIGNOR curated interactions for SASS6 Gene

Drugs & Compounds for SASS6 Gene

No Compound Related Data Available

Transcripts for SASS6 Gene

mRNA/cDNA for SASS6 Gene

Unigene Clusters for SASS6 Gene

Spindle assembly 6 homolog (C. elegans):
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SASS6 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17
SP1:
SP2:
SP3: - -
SP4: - - -
SP5:

Relevant External Links for SASS6 Gene

GeneLoc Exon Structure for
SASS6
ECgene alternative splicing isoforms for
SASS6

Expression for SASS6 Gene

mRNA expression in normal human tissues for SASS6 Gene

Protein differential expression in normal tissues from HIPED for SASS6 Gene

This gene is overexpressed in Esophagus (32.9), Plasma (20.4), and Urinary Bladder (11.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for SASS6 Gene



SOURCE GeneReport for Unigene cluster for SASS6 Gene Hs.591447

genes like me logo Genes that share expression patterns with SASS6: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SASS6 Gene

Orthologs for SASS6 Gene

This gene was present in the common ancestor of animals.

Orthologs for SASS6 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SASS6 35
  • 91.12 (n)
  • 92.24 (a)
SASS6 36
  • 92 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SASS6 35
  • 91.48 (n)
  • 91.48 (a)
SASS6 36
  • 73 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Sass6 35
  • 83.87 (n)
  • 85.6 (a)
Sass6 16
Sass6 36
  • 85 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia SASS6 35
  • 99.8 (n)
  • 99.85 (a)
SASS6 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Sass6 35
  • 84.79 (n)
  • 88.37 (a)
oppossum
(Monodelphis domestica)
Mammalia SASS6 36
  • 83 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SASS6 36
  • 75 (a)
OneToOne
chicken
(Gallus gallus)
Aves SASS6 35
  • 68.83 (n)
  • 68.46 (a)
SASS6 36
  • 67 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SASS6 36
  • 67 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia sass6 35
  • 59.57 (n)
  • 55.8 (a)
Str.4267 35
African clawed frog
(Xenopus laevis)
Amphibia Xl.6121 35
zebrafish
(Danio rerio)
Actinopterygii Dr.2516 35
sass6 35
  • 61.54 (n)
  • 58.9 (a)
sass6 36
  • 56 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta sas-6 36
  • 22 (a)
OneToOne
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.2205 35
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 44 (a)
OneToOne
Species with no ortholog for SASS6:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SASS6 Gene

ENSEMBL:
Gene Tree for SASS6 (if available)
TreeFam:
Gene Tree for SASS6 (if available)

Paralogs for SASS6 Gene

No data available for Paralogs for SASS6 Gene

Variants for SASS6 Gene

Sequence variations from dbSNP and Humsavar for SASS6 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs13375867 - 100,110,377(+) TAGCC(A/G)CTTCT reference, missense
VAR_073833 Microcephaly 14, primary, autosomal recessive (MCPH14)
rs482873 -- 100,124,201(+) CTACT(C/T)TGGAA intron-variant
rs506414 -- 100,121,641(+) CTCAG(C/G)AAAGG intron-variant
rs507233 -- 100,121,694(+) AAAAA(A/C)AGAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SASS6 Gene

Variant ID Type Subtype PubMed ID
nsv830804 CNV Gain 17160897
esv274322 CNV Insertion 20981092
esv270253 CNV Insertion 20981092
esv1008570 CNV Gain 20482838
nsv2121 CNV Insertion 18451855

Variation tolerance for SASS6 Gene

Residual Variation Intolerance Score: 19.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 10.45; 90.98% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SASS6 Gene

HapMap Linkage Disequilibrium report
SASS6
Human Gene Mutation Database (HGMD)
SASS6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SASS6 Gene

Disorders for SASS6 Gene

MalaCards: The human disease database

(12) MalaCards diseases for SASS6 Gene - From: OMIM, ClinVar, Orphanet, Swiss-Prot, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
microcephaly 14, primary, autosomal recessive
  • mcph14
autosomal recessive primary microcephaly
  • mcph
optic papillitis
  • papillitis
chronic apical periodontitis
  • chronic apical periodontitis nos
dental pulp necrosis
  • necrosis of the pulp
- elite association - COSMIC cancer census association via MalaCards
Search SASS6 in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

SAS6_HUMAN
  • Microcephaly 14, primary, autosomal recessive (MCPH14) [MIM:616402]: A form of microcephaly, a disease defined as a head circumference more than 3 standard deviations below the age, sex and ethnically matched mean. Brain weight is markedly reduced and the cerebral cortex is disproportionately small. {ECO:0000269 PubMed:24951542}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Relevant External Links for SASS6

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SASS6
genes like me logo Genes that share disorders with SASS6: view

No data available for Genatlas for SASS6 Gene

Publications for SASS6 Gene

  1. SAS-6 defines a protein family required for centrosome duplication in C. elegans and in human cells. (PMID: 15665853) Leidel S. … Goenczy P. (Nat. Cell Biol. 2005) 2 3 4 67
  2. Proteomic characterization of the human centrosome by protein correlation profiling. (PMID: 14654843) Andersen J.S. … Mann M. (Nature 2003) 2 3
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  4. The CP110-interacting proteins Talpid3 and Cep290 play overlapping and distinct roles in cilia assembly. (PMID: 24421332) Kobayashi T. … Dynlacht B.D. (J. Cell Biol. 2014) 3
  5. Mechanisms of HsSAS-6 assembly promoting centriole formation in human cells. (PMID: 24590172) Keller D. … GAPnczy P. (J. Cell Biol. 2014) 3

Products for SASS6 Gene

Sources for SASS6 Gene

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