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Aliases for SAPCD2 Gene

Aliases for SAPCD2 Gene

  • Suppressor APC Domain Containing 2 2 3 5
  • Tumor Specificity And Mitosis Phase-Dependent Expression Protein 3 4
  • C9orf140 3 4
  • TS/MDEP 3 4
  • P42.3 3 4
  • Suppressor APC Domain-Containing Protein 2 3
  • Chromosome 9 Open Reading Frame 140 2
  • Protein C9orf140 3
  • 2010317E24Rik 3

External Ids for SAPCD2 Gene

Previous HGNC Symbols for SAPCD2 Gene

  • C9orf140

Previous GeneCards Identifiers for SAPCD2 Gene

  • GC09M139957

Summaries for SAPCD2 Gene

GeneCards Summary for SAPCD2 Gene

SAPCD2 (Suppressor APC Domain Containing 2) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SAPCD2 Gene

Genomics for SAPCD2 Gene

Regulatory Elements for SAPCD2 Gene

Enhancers for SAPCD2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09F136900 1.1 Ensembl ENCODE 4.9 +168.4 168414 4.0 HDGF ELF3 TBP PKNOX1 RAD21 ZBTB40 KAT2B YY1 EGR1 ZNF207 TRAF2 TMEM141 PHPT1 ANAPC2 ENSG00000238268 LCN12 C9orf142 SAPCD2 MIR4479 PIR43412
GH09F137511 0.9 ENCODE 5.4 -441.2 -441186 1.4 HDGF TBP HDAC1 ATF1 PKNOX1 CREB3L1 SIRT6 FOS ZNF202 ZBTB2 DPH7 ANAPC2 SNHG7 LOC100418938 SAPCD2 PIR51097 PIR44519
GH09F137079 0.5 ENCODE 6.6 -8.5 -8546 0.1 POLR2A ZBTB33 KLF8 SAPCD2 UAP1L1 PIR60888
GH09F137516 0.7 FANTOM5 4.7 -446.6 -446568 0.4 ZBTB2 MTA2 BCL11B ZNF592 MTA3 BCL11A ZNF366 ATF3 ZNF169 TARDBP GRIN1 RNF208 SAPCD2 ABCA2 PNPLA7 CACNA1B ENTPD2 PIR51097 PIR44519
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SAPCD2 on UCSC Golden Path with GeneCards custom track

Promoters for SAPCD2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001317885 488 1801 HDGF ATF1 CREB3L1 ARID4B SIN3A GLIS2 ELK1 ZNF143 FOS SP3

Genomic Location for SAPCD2 Gene

137,062,124 bp from pter
137,070,588 bp from pter
8,465 bases
Minus strand

Genomic View for SAPCD2 Gene

Genes around SAPCD2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SAPCD2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SAPCD2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SAPCD2 Gene

Proteins for SAPCD2 Gene

  • Protein details for SAPCD2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Suppressor APC domain-containing protein 2
    Protein Accession:

    Protein attributes for SAPCD2 Gene

    394 amino acids
    Molecular mass:
    42637 Da
    Quaternary structure:
    No Data Available
    • Sequence=AAH48267.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAZ39408.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

neXtProt entry for SAPCD2 Gene

Post-translational modifications for SAPCD2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SAPCD2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SAPCD2 Gene

Domains & Families for SAPCD2 Gene

Protein Domains for SAPCD2 Gene


Suggested Antigen Peptide Sequences for SAPCD2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SAPCD2: view

No data available for Gene Families and UniProtKB/Swiss-Prot for SAPCD2 Gene

Function for SAPCD2 Gene

genes like me logo Genes that share phenotypes with SAPCD2: view

Animal Models for SAPCD2 Gene

MGI Knock Outs for SAPCD2:

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for SAPCD2 Gene

Localization for SAPCD2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SAPCD2 Gene

Cytoplasm. Nucleus.

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SAPCD2 gene
Compartment Confidence
nucleus 5
cytosol 5
extracellular 1
mitochondrion 1
peroxisome 1
endoplasmic reticulum 1
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for SAPCD2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA --
GO:0005730 nucleolus IDA --
GO:0005737 cytoplasm IDA --
genes like me logo Genes that share ontologies with SAPCD2: view

Pathways & Interactions for SAPCD2 Gene

SuperPathways for SAPCD2 Gene

No Data Available

Interacting Proteins for SAPCD2 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
Selected Interacting proteins: Q86UD0-SAPC2_HUMAN ENSP00000386348 for SAPCD2 Gene via IID STRING

Gene Ontology (GO) - Biological Process for SAPCD2 Gene


No data available for Pathways by source and SIGNOR curated interactions for SAPCD2 Gene

Transcripts for SAPCD2 Gene

mRNA/cDNA for SAPCD2 Gene

Unigene Clusters for SAPCD2 Gene

Suppressor APC domain containing 2:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SAPCD2 Gene

No ASD Table

Relevant External Links for SAPCD2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SAPCD2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SAPCD2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for SAPCD2 Gene

This gene is overexpressed in Nasal epithelium (49.3), Lung (8.6), and Heart (7.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for SAPCD2 Gene

NURSA nuclear receptor signaling pathways regulating expression of SAPCD2 Gene:


SOURCE GeneReport for Unigene cluster for SAPCD2 Gene:


mRNA Expression by UniProt/SwissProt for SAPCD2 Gene:

Tissue specificity: Expressed in 5-month-old fetal tissues, including stomach, intestine, colon, liver, brain, lung, heart, spleen and kidney. Undetectable in non-cancerous adult tissues. Expressed in many primary gastric carcinoma, but almost not in adjacent normal mucosa. Expressed preferentially in M and G1 phases, compared to S and G2 phases.
genes like me logo Genes that share expression patterns with SAPCD2: view

Primer Products

No data available for mRNA differential expression in normal tissues and Protein tissue co-expression partners for SAPCD2 Gene

Orthologs for SAPCD2 Gene

This gene was present in the common ancestor of animals.

Orthologs for SAPCD2 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SAPCD2 35
  • 99 (a)
(Bos Taurus)
Mammalia SAPCD2 34 35
  • 85.38 (n)
(Canis familiaris)
Mammalia SAPCD2 34
  • 84.94 (n)
C9ORF140 35
  • 82 (a)
(Rattus norvegicus)
Mammalia Sapcd2 34
  • 82.08 (n)
(Mus musculus)
Mammalia Sapcd2 34 16 35
  • 81.93 (n)
(Monodelphis domestica)
Mammalia SAPCD2 35
  • 56 (a)
(Gallus gallus)
Aves SAPCD2 35
  • 55 (a)
(Anolis carolinensis)
Reptilia SAPCD2 35
  • 54 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100487796 34
  • 44.58 (n)
Str.7058 34
African clawed frog
(Xenopus laevis)
Amphibia Xl.24300 34
fruit fly
(Drosophila melanogaster)
Insecta CG3880 35
  • 24 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.1097 35
  • 17 (a)
Species where no ortholog for SAPCD2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SAPCD2 Gene

Gene Tree for SAPCD2 (if available)
Gene Tree for SAPCD2 (if available)

Paralogs for SAPCD2 Gene Pseudogenes for SAPCD2 Gene

genes like me logo Genes that share paralogs with SAPCD2: view

No data available for Paralogs for SAPCD2 Gene

Variants for SAPCD2 Gene

Sequence variations from dbSNP and Humsavar for SAPCD2 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs10781537 -- 137,067,543(+) GGGGC(C/G)GGGGG intron-variant
rs10870173 -- 137,062,055(+) CGCCC(A/G)GCCTA downstream-variant-500B
rs10870174 -- 137,062,061(+) GCCTA(A/G)TCTTC downstream-variant-500B
rs10870175 -- 137,062,502(+) TCAAC(C/T)GGGGA utr-variant-3-prime
rs111327164 -- 137,065,748(+) TGTGG(A/G)TGGGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SAPCD2 Gene

Variant ID Type Subtype PubMed ID
dgv13007n54 CNV loss 21841781
esv2422220 CNV deletion 17116639
esv2739405 CNV deletion 23290073
esv2739407 CNV deletion 23290073
esv2761561 CNV gain 21179565
nsv1124489 CNV deletion 24896259
nsv469918 CNV loss 18288195
nsv524322 CNV loss 19592680
nsv616005 CNV loss 21841781
nsv616006 CNV loss 21841781
nsv831761 CNV loss 17160897
nsv951206 CNV deletion 24416366
nsv982354 CNV duplication 23825009

Variation tolerance for SAPCD2 Gene

Gene Damage Index Score: 12.87; 94.83% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SAPCD2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SAPCD2 Gene

Disorders for SAPCD2 Gene

Relevant External Links for SAPCD2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SAPCD2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SAPCD2 Gene

Publications for SAPCD2 Gene

  1. Identification and characterization of a novel p42.3 gene as tumor- specific and mitosis phase-dependent expression in gastric cancer. (PMID: 17525738) Xu X. … Lu Y. (Oncogene 2007) 3 4 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  3. SAPCD2 Controls Spindle Orientation and Asymmetric Divisions by Negatively Regulating the GI+i-LGN-NuMA Ternary Complex. (PMID: 26766442) Chiu C.W. … Angers S. (Dev. Cell 2016) 3 64
  4. Optimization and Corroboration of the Regulatory Pathway of p42.3 Protein in the Pathogenesis of Gastric Carcinoma. (PMID: 26106439) Hao Y. … Nan K. (Comput Math Methods Med 2015) 3 64
  5. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64

Products for SAPCD2 Gene

Sources for SAPCD2 Gene

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