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Aliases for SAPCD1-AS1 Gene

Subcategory (RNA class) for SAPCD1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SAPCD1-AS1 Gene

  • SAPCD1 Antisense RNA 1 2 3 5
  • C6orf26 Antisense RNA 1 (Non-Protein Coding) 2 3
  • SAPCD1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • XXbac-BPG32J3.18 3
  • C6orf26-AS1 3

External Ids for SAPCD1-AS1 Gene

Previous HGNC Symbols for SAPCD1-AS1 Gene

  • C6orf26-AS1

Previous GeneCards Identifiers for SAPCD1-AS1 Gene

  • GC06M031739
  • GC00U935865

Summaries for SAPCD1-AS1 Gene

GeneCards Summary for SAPCD1-AS1 Gene

SAPCD1-AS1 (SAPCD1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SAPCD1-AS1 Gene

Genomics for SAPCD1-AS1 Gene

Regulatory Elements for SAPCD1-AS1 Gene

Enhancers for SAPCD1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G031733 1.9 FANTOM5 ENCODE dbSUPER 12.1 +28.1 28134 8.5 MLX CREB3L1 ZFP64 YBX1 FEZF1 DMAP1 YY1 SLC30A9 ZNF263 SP3 LY6G5C LSM2 LY6G5B VARS ABHD16A MICA EHMT2 PRRC2A C4A CLIC1
GH06G031829 1.4 ENCODE dbSUPER 11.7 -68.6 -68569 9.1 CREB3L1 AGO1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 MEF2D LSM2 LY6G5B ATF6B DDX39B SKIV2L VARS LY6G6C GTF2H4 CSNK2B BAG6
GH06G031861 1.2 ENCODE 10.7 -98.5 -98528 4.5 MLX CREB3L1 AGO1 ZFP64 YBX1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 LSM2 LY6G5B MICA PPT2 C4A GTF2H4 DDX39B STK19B LY6G5C PRRT1
GH06G031805 1.1 ENCODE 11.6 -41.2 -41213 2.0 HDGF HNRNPUL1 PKNOX1 MLX CREB3L1 ARNT AGO1 WRNIP1 SIN3A ARID4B LSM2 DXO ATF6B GTF2H4 RPL3P2 VWA7 ENSG00000201555 SAPCD1-AS1 SAPCD1 MSH5-SAPCD1
GH06G031928 1 ENCODE 10.4 -163.9 -163888 1.2 PKNOX1 AGO1 ZFP64 ARID4B SIN3A ZNF2 YY1 ZNF766 ZNF143 ZNF207 SKIV2L LY6G5B ATF6B DDX39B NFKBIL1 LSM2 PPT2 MIR1236 TCF19 STK19
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SAPCD1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SAPCD1-AS1 Gene

Chromosome:
6
Start:
31,764,135 bp from pter
End:
31,765,588 bp from pter
Size:
1,454 bases
Orientation:
Minus strand

Genomic View for SAPCD1-AS1 Gene

Genes around SAPCD1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SAPCD1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SAPCD1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for SAPCD1-AS1 Gene

Post-translational modifications for SAPCD1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SAPCD1-AS1 Gene

Domains & Families for SAPCD1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SAPCD1-AS1 Gene

Function for SAPCD1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SAPCD1-AS1 Gene

Localization for SAPCD1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SAPCD1-AS1 Gene

Pathways & Interactions for SAPCD1-AS1 Gene

SuperPathways for SAPCD1-AS1 Gene

No Data Available

Interacting Proteins for SAPCD1-AS1 Gene

Gene Ontology (GO) - Biological Process for SAPCD1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SAPCD1-AS1 Gene

Drugs & Compounds for SAPCD1-AS1 Gene

No Compound Related Data Available

Transcripts for SAPCD1-AS1 Gene

mRNA/cDNA for SAPCD1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SAPCD1-AS1 Gene

No ASD Table

Relevant External Links for SAPCD1-AS1 Gene

GeneLoc Exon Structure for
SAPCD1-AS1
ECgene alternative splicing isoforms for
SAPCD1-AS1

Expression for SAPCD1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SAPCD1-AS1 Gene

genes like me logo Genes that share expression patterns with SAPCD1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SAPCD1-AS1 Gene

Orthologs for SAPCD1-AS1 Gene

Evolution for SAPCD1-AS1 Gene

ENSEMBL:
Gene Tree for SAPCD1-AS1 (if available)
TreeFam:
Gene Tree for SAPCD1-AS1 (if available)

No data available for Orthologs for SAPCD1-AS1 Gene

Paralogs for SAPCD1-AS1 Gene

No data available for Paralogs for SAPCD1-AS1 Gene

Variants for SAPCD1-AS1 Gene

Sequence variations from dbSNP and Humsavar for SAPCD1-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1002390962 -- 31,766,182(+) GGCAG(C/G)GCTTG intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1002603558 -- 31,767,304(+) TGATC(A/C/G)TGTTC intron-variant, upstream-variant-2KB
rs1005843631 -- 31,765,355(+) AATCG(A/C)TTGAA intron-variant, downstream-variant-500B, utr-variant-3-prime
rs1006120529 -- 31,764,975(+) TCGCT(C/T)AGGCT intron-variant, utr-variant-3-prime
rs1006864594 -- 31,765,014(+) TGCAG(C/G)CTCAA intron-variant, utr-variant-3-prime

Relevant External Links for SAPCD1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SAPCD1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SAPCD1-AS1 Gene

Disorders for SAPCD1-AS1 Gene

Relevant External Links for SAPCD1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SAPCD1-AS1

No disorders were found for SAPCD1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SAPCD1-AS1 Gene

Publications for SAPCD1-AS1 Gene

No publications were found for SAPCD1-AS1 Gene.

Products for SAPCD1-AS1 Gene

Sources for SAPCD1-AS1 Gene

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