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Aliases for SAPCD1-AS1 Gene

Subcategory (RNA class) for SAPCD1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SAPCD1-AS1 Gene

  • SAPCD1 Antisense RNA 1 2 3 5
  • SAPCD1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • C6orf26 Antisense RNA 1 (Non-Protein Coding) 2
  • XXbac-BPG32J3.18 3
  • C6orf26-AS1 3

External Ids for SAPCD1-AS1 Gene

Previous HGNC Symbols for SAPCD1-AS1 Gene

  • C6orf26-AS1

Previous GeneCards Identifiers for SAPCD1-AS1 Gene

  • GC06M031739
  • GC00U935865

Summaries for SAPCD1-AS1 Gene

GeneCards Summary for SAPCD1-AS1 Gene

SAPCD1-AS1 (SAPCD1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SAPCD1-AS1 Gene

Genomics for SAPCD1-AS1 Gene

Regulatory Elements for SAPCD1-AS1 Gene

Enhancers for SAPCD1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F031733 1.7 FANTOM5 ENCODE 12.1 +28.1 28134 8.5 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF263 SP3 LY6G5C MICA LSM2 EHMT2 LY6G5B DXO GTF2H4 VARS ABHD16A ATF6B
GH06F031829 1.2 ENCODE 11.7 -68.6 -68569 9.1 CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 MEF2D GLIS1 ATF6B LSM2 LY6G5B DDX39B SKIV2L DXO GTF2H4 VARS LY6G6C CSNK2B
GH06F031928 1.3 Ensembl ENCODE 10.4 -163.8 -163839 1.3 PKNOX1 ZFP64 ARID4B SIN3A ZNF2 ZNF48 YY1 GLIS2 ZNF766 ZNF143 SKIV2L LY6G5B ATF6B DDX39B NFKBIL1 LSM2 PPT2 MIR1236 TCF19 STK19
GH06F031861 1.2 ENCODE 10.7 -98.5 -98528 4.5 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF548 ZNF263 LY6G5B LSM2 MICA C4A SNORA38 ENSG00000233902 LOC102725019 DDX39B STK19B LY6G5C
GH06F031805 1.1 ENCODE 11.5 -41.2 -41213 2.0 HDGF PKNOX1 ARNT CREB3L1 MLX WRNIP1 ARID4B SIN3A DMAP1 ZNF2 LSM2 DXO ATF6B GTF2H4 RPL3P2 VWA7 ENSG00000201555 SAPCD1 SAPCD1-AS1 MSH5
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SAPCD1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SAPCD1-AS1 Gene

Chromosome:
6
Start:
31,764,135 bp from pter
End:
31,765,588 bp from pter
Size:
1,454 bases
Orientation:
Minus strand

Genomic View for SAPCD1-AS1 Gene

Genes around SAPCD1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SAPCD1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SAPCD1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for SAPCD1-AS1 Gene

Post-translational modifications for SAPCD1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SAPCD1-AS1 Gene

Domains & Families for SAPCD1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SAPCD1-AS1 Gene

Function for SAPCD1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SAPCD1-AS1 Gene

Localization for SAPCD1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SAPCD1-AS1 Gene

Pathways & Interactions for SAPCD1-AS1 Gene

SuperPathways for SAPCD1-AS1 Gene

No Data Available

Interacting Proteins for SAPCD1-AS1 Gene

Gene Ontology (GO) - Biological Process for SAPCD1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SAPCD1-AS1 Gene

Transcripts for SAPCD1-AS1 Gene

mRNA/cDNA for SAPCD1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SAPCD1-AS1 Gene

No ASD Table

Relevant External Links for SAPCD1-AS1 Gene

GeneLoc Exon Structure for
SAPCD1-AS1
ECgene alternative splicing isoforms for
SAPCD1-AS1

Expression for SAPCD1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SAPCD1-AS1 Gene

genes like me logo Genes that share expression patterns with SAPCD1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SAPCD1-AS1 Gene

Orthologs for SAPCD1-AS1 Gene

Evolution for SAPCD1-AS1 Gene

ENSEMBL:
Gene Tree for SAPCD1-AS1 (if available)
TreeFam:
Gene Tree for SAPCD1-AS1 (if available)

No data available for Orthologs for SAPCD1-AS1 Gene

Paralogs for SAPCD1-AS1 Gene

No data available for Paralogs for SAPCD1-AS1 Gene

Variants for SAPCD1-AS1 Gene

Sequence variations from dbSNP and Humsavar for SAPCD1-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs113306699 -- 31,767,341(+) CTTCC(C/T)AGGAA intron-variant, upstream-variant-2KB
rs113525864 -- 31,765,409(+) ACTCC(A/C)GCCTG intron-variant, downstream-variant-500B, utr-variant-3-prime
rs11967206 -- 31,764,902(+) AATAT(C/T)CATTG intron-variant, utr-variant-3-prime
rs138379649 -- 31,764,871(+) TCTCA(C/T)AGGGT intron-variant, utr-variant-3-prime
rs138415590 -- 31,767,401(+) GACCT(A/G)GATCT nc-transcript-variant, upstream-variant-2KB, reference, stop-gained

Relevant External Links for SAPCD1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SAPCD1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SAPCD1-AS1 Gene

Disorders for SAPCD1-AS1 Gene

Relevant External Links for SAPCD1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SAPCD1-AS1

No disorders were found for SAPCD1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SAPCD1-AS1 Gene

Publications for SAPCD1-AS1 Gene

No publications were found for SAPCD1-AS1 Gene.

Products for SAPCD1-AS1 Gene

Sources for SAPCD1-AS1 Gene

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