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Aliases for SAP30L-AS1 Gene

Subcategory (RNA class) for SAP30L-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for SAP30L-AS1 Gene

  • SAP30L Antisense RNA 1 (Head To Head) 2 3
  • GALNT10 Antisense RNA 1 2 3
  • CTB-157D17.1 3
  • GALNT10-AS1 3

External Ids for SAP30L-AS1 Gene

ORGUL Members for SAP30L-AS1 Gene

Previous GeneCards Identifiers for SAP30L-AS1 Gene

  • GC05M153710

Summaries for SAP30L-AS1 Gene

GeneCards Summary for SAP30L-AS1 Gene

SAP30L-AS1 (SAP30L Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for SAP30L-AS1 Gene - the ORGUL cluster for this gene includes several descriptions:

  • antisense_RNA: Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA.

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SAP30L-AS1 Gene

Genomics for SAP30L-AS1 Gene

Genomic Location for SAP30L-AS1 Gene

Start:
154,329,437 bp from pter
End:
154,445,850 bp from pter
Size:
116,414 bases
Orientation:
Minus strand

Genomic View for SAP30L-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SAP30L-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SAP30L-AS1 Gene

No data available for Regulatory Elements for SAP30L-AS1 Gene

Proteins for SAP30L-AS1 Gene

Post-translational modifications for SAP30L-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SAP30L-AS1 Gene

Domains for SAP30L-AS1 Gene

Gene Families for SAP30L-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SAP30L-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SAP30L-AS1 Gene

Function for SAP30L-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SAP30L-AS1 Gene

Localization for SAP30L-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SAP30L-AS1 Gene

Pathways for SAP30L-AS1 Gene

SuperPathways for SAP30L-AS1 Gene

No Data Available

Interacting Proteins for SAP30L-AS1 Gene

Gene Ontology (GO) - Biological Process for SAP30L-AS1 Gene

None

No data available for Pathways by source for SAP30L-AS1 Gene

Transcripts for SAP30L-AS1 Gene

mRNA/cDNA for SAP30L-AS1 Gene

(11) Selected AceView cDNA sequences:
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SAP30L-AS1 Gene

No ASD Table

Relevant External Links for SAP30L-AS1 Gene

GeneLoc Exon Structure for
SAP30L-AS1
ECgene alternative splicing isoforms for
SAP30L-AS1

Expression for SAP30L-AS1 Gene

mRNA expression in normal human tissues for SAP30L-AS1 Gene

genes like me logo Genes that share expressions with SAP30L-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SAP30L-AS1 Gene

Orthologs for SAP30L-AS1 Gene

Evolution for SAP30L-AS1 Gene

ENSEMBL:
Gene Tree for SAP30L-AS1 (if available)
TreeFam:
Gene Tree for SAP30L-AS1 (if available)

No data available for Orthologs for SAP30L-AS1 Gene

Paralogs for SAP30L-AS1 Gene

No data available for Paralogs for SAP30L-AS1 Gene

Variants for SAP30L-AS1 Gene

Sequence variations from dbSNP and Humsavar for SAP30L-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs962958 -- 154,435,743(-) aaaat(A/G)tttgc intron-variant
rs974322 -- 154,443,263(+) CGGGC(A/G)GATCA intron-variant
rs1030196 -- 154,422,422(+) AATAA(A/G)TGTAT intron-variant
rs1030197 -- 154,422,804(+) GGAGA(G/T)GGGAG intron-variant
rs1080557 -- 154,436,625(-) AACTA(C/G)TAACT intron-variant

Relevant External Links for SAP30L-AS1 Gene

HapMap Linkage Disequilibrium report
SAP30L-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SAP30L-AS1 Gene

Disorders for SAP30L-AS1 Gene

No disorders were found for SAP30L-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for SAP30L-AS1 Gene

Publications for SAP30L-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. A genome-wide association study of behavioral disinhibition. (PMID: 23942779) McGue M. … Iacono W.G. (Behav. Genet. 2013) 3

Products for SAP30L-AS1 Gene

Sources for SAP30L-AS1 Gene

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