Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SAP30L-AS1 Gene

Subcategory (RNA class) for SAP30L-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SAP30L-AS1 Gene

  • SAP30L Antisense RNA 1 (Head To Head) 2 3 5
  • GALNT10 Antisense RNA 1 2 3
  • CTB-157D17.1 3
  • GALNT10-AS1 3

External Ids for SAP30L-AS1 Gene

Previous GeneCards Identifiers for SAP30L-AS1 Gene

  • GC05M153710

Summaries for SAP30L-AS1 Gene

GeneCards Summary for SAP30L-AS1 Gene

SAP30L-AS1 (SAP30L Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SAP30L-AS1 Gene

Genomics for SAP30L-AS1 Gene

Regulatory Elements for SAP30L-AS1 Gene

Enhancers for SAP30L-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F154834 1.4 Ensembl ENCODE 31.5 -389.4 -389377 1.9 PKNOX1 ARNT MLX ARID4B FEZF1 ZNF2 YY1 ZNF548 FOS KLF13 CNOT8 SAP30L-AS1 MFAP3 GEMIN5 FAXDC2 MIR378H
GH05F154037 1.1 ENCODE 18.2 +407.0 407006 2.1 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 CBX5 SAP30L-AS1 LINC01861 ENSG00000261382 GEMIN5 FAM114A2 MFAP3 PIR52529
GH05F154691 1.4 FANTOM5 Ensembl ENCODE 14.2 -246.4 -246415 2.4 TBP FEZF1 ZNF2 RAD21 GTF3C2 GLIS2 SCRT2 ZNF143 FOS EGR2 LARP1 SAP30L-AS1 CNOT8 GC05P154691 GC05M154703
GH05F154682 1.7 FANTOM5 Ensembl ENCODE 10.5 -237.3 -237289 2.3 PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 CBX5 FOS GEMIN5 SAP30L-AS1 LARP1 CNOT8 MIR1303
GH05F154444 1 ENCODE 14.9 -0.4 -389 3.3 HDGF PKNOX1 ZFP64 ARID4B SIN3A GLI4 ZNF48 ZNF2 YY1 ZNF121 SAP30L-AS1 GEMIN5 MFAP3 SAP30L HAND1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SAP30L-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SAP30L-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001294514 -350 3201 HDGF PKNOX1 ZFP64 ARID4B SIN3A GLI4 ZNF48 ZNF2 ZNF121 GTF3C2

Genomic Location for SAP30L-AS1 Gene

Chromosome:
5
Start:
154,329,437 bp from pter
End:
154,445,850 bp from pter
Size:
116,414 bases
Orientation:
Minus strand

Genomic View for SAP30L-AS1 Gene

Genes around SAP30L-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SAP30L-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SAP30L-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SAP30L-AS1 Gene

Proteins for SAP30L-AS1 Gene

Post-translational modifications for SAP30L-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SAP30L-AS1 Gene

Domains & Families for SAP30L-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SAP30L-AS1 Gene

Function for SAP30L-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SAP30L-AS1 Gene

Localization for SAP30L-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SAP30L-AS1 Gene

Pathways & Interactions for SAP30L-AS1 Gene

SuperPathways for SAP30L-AS1 Gene

No Data Available

Interacting Proteins for SAP30L-AS1 Gene

Gene Ontology (GO) - Biological Process for SAP30L-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SAP30L-AS1 Gene

Transcripts for SAP30L-AS1 Gene

mRNA/cDNA for SAP30L-AS1 Gene

(11) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SAP30L-AS1 Gene

No ASD Table

Relevant External Links for SAP30L-AS1 Gene

GeneLoc Exon Structure for
SAP30L-AS1
ECgene alternative splicing isoforms for
SAP30L-AS1

Expression for SAP30L-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SAP30L-AS1 Gene

genes like me logo Genes that share expression patterns with SAP30L-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SAP30L-AS1 Gene

Orthologs for SAP30L-AS1 Gene

Evolution for SAP30L-AS1 Gene

ENSEMBL:
Gene Tree for SAP30L-AS1 (if available)
TreeFam:
Gene Tree for SAP30L-AS1 (if available)

No data available for Orthologs for SAP30L-AS1 Gene

Paralogs for SAP30L-AS1 Gene

No data available for Paralogs for SAP30L-AS1 Gene

Variants for SAP30L-AS1 Gene

Sequence variations from dbSNP and Humsavar for SAP30L-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000969 -- 154,410,813(-) aagCA(C/T)GCTGT intron-variant
rs10036030 -- 154,406,548(+) tccca(A/G)cagtt intron-variant
rs10037670 -- 154,431,930(+) aatac(A/G)tatat intron-variant
rs10040997 -- 154,399,157(+) gaggg(A/G)agtca intron-variant
rs10043393 -- 154,432,487(+) attca(C/G)TCTGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SAP30L-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv830520 CNV loss 17160897
nsv524343 CNV loss 19592680
nsv5080 CNV insertion 18451855
nsv475475 CNV novel sequence insertion 20440878
nsv1073925 CNV deletion 25765185
nsv1015362 CNV gain 25217958
esv3607243 CNV loss 21293372
esv3607242 CNV loss 21293372
esv3566843 CNV deletion 23714750
esv28214 CNV loss 19812545
esv2730936 CNV deletion 23290073
esv2667405 CNV deletion 23128226
dgv3197n106 CNV deletion 24896259
dgv1052e199 CNV deletion 23128226

Relevant External Links for SAP30L-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SAP30L-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SAP30L-AS1 Gene

Disorders for SAP30L-AS1 Gene

Relevant External Links for SAP30L-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SAP30L-AS1

No disorders were found for SAP30L-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SAP30L-AS1 Gene

Publications for SAP30L-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. A genome-wide association study of behavioral disinhibition. (PMID: 23942779) McGue M. … Iacono W.G. (Behav. Genet. 2013) 3 64
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for SAP30L-AS1 Gene

Sources for SAP30L-AS1 Gene

Content
Loading form....