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Aliases for SAP30L-AS1 Gene

Subcategory (RNA class) for SAP30L-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SAP30L-AS1 Gene

  • SAP30L Antisense RNA 1 (Head To Head) 2 3 5
  • GALNT10 Antisense RNA 1 2 3
  • CTB-157D17.1 3
  • GALNT10-AS1 3

External Ids for SAP30L-AS1 Gene

Previous GeneCards Identifiers for SAP30L-AS1 Gene

  • GC05M153710

Summaries for SAP30L-AS1 Gene

GeneCards Summary for SAP30L-AS1 Gene

SAP30L-AS1 (SAP30L Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SAP30L-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SAP30L-AS1 Gene

Genomics for SAP30L-AS1 Gene

Regulatory Elements for SAP30L-AS1 Gene

Enhancers for SAP30L-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H154752 1.7 Ensembl ENCODE dbSUPER 39.1 -311.6 -311633 9.1 HNRNPUL1 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 SAP30L-AS1 CNOT8 GEMIN5 LARP1 MIR1303 FAM114A2 GC05M154784 GC05P154730
GH05H154834 1.6 Ensembl ENCODE dbSUPER 31.5 -389.2 -389232 1.7 PKNOX1 FOXA2 MLX ARNT ARID4B FEZF1 ZNF2 YY1 ZNF766 ZNF548 CNOT8 SAP30L-AS1 LARP1 MFAP3 GEMIN5 FAM114A2 FAXDC2 MIR378H
GH05H154856 1.7 Ensembl ENCODE dbSUPER 13.5 -413.8 -413840 6.2 HDGF PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 SAP30L-AS1 CNOT8 FAXDC2 GEMIN5
GH05H154691 1.3 FANTOM5 Ensembl ENCODE 14.2 -246.4 -246415 2.4 TBP ETS1 GTF3C2 ZFHX2 POLR2A FOS CHD2 EGR2 MAZ CEBPB LARP1 SAP30L-AS1 CNOT8 GC05P154691 GC05M154703
GH05H154682 1.7 FANTOM5 Ensembl ENCODE 10.5 -237.3 -237289 2.3 HDGF FOXA2 PKNOX1 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 YY1 GEMIN5 SAP30L-AS1 LARP1 CNOT8 MIR1303
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SAP30L-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SAP30L-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000189328 -350 2801 HDGF PKNOX1 ZFP64 ARID4B SIN3A GLI4 ZNF2 YY1 ZNF121 GTF3C2

Genomic Locations for SAP30L-AS1 Gene

Genomic Locations for SAP30L-AS1 Gene
116,414 bases
Minus strand

Genomic View for SAP30L-AS1 Gene

Genes around SAP30L-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SAP30L-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SAP30L-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SAP30L-AS1 Gene

Proteins for SAP30L-AS1 Gene

Post-translational modifications for SAP30L-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SAP30L-AS1 Gene

Domains & Families for SAP30L-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SAP30L-AS1 Gene

Function for SAP30L-AS1 Gene

Phenotypes From GWAS Catalog for SAP30L-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SAP30L-AS1 Gene

Localization for SAP30L-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SAP30L-AS1 Gene

Pathways & Interactions for SAP30L-AS1 Gene

SuperPathways for SAP30L-AS1 Gene

No Data Available

Interacting Proteins for SAP30L-AS1 Gene

Gene Ontology (GO) - Biological Process for SAP30L-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for SAP30L-AS1 Gene

Drugs & Compounds for SAP30L-AS1 Gene

No Compound Related Data Available

Transcripts for SAP30L-AS1 Gene

mRNA/cDNA for SAP30L-AS1 Gene

(11) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SAP30L-AS1 Gene

No ASD Table

Relevant External Links for SAP30L-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SAP30L-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SAP30L-AS1 Gene

genes like me logo Genes that share expression patterns with SAP30L-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SAP30L-AS1 Gene

Orthologs for SAP30L-AS1 Gene

Evolution for SAP30L-AS1 Gene

Gene Tree for SAP30L-AS1 (if available)
Gene Tree for SAP30L-AS1 (if available)

No data available for Orthologs for SAP30L-AS1 Gene

Paralogs for SAP30L-AS1 Gene

No data available for Paralogs for SAP30L-AS1 Gene

Variants for SAP30L-AS1 Gene

Sequence variations from dbSNP and Humsavar for SAP30L-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000006629 -- 154,406,600(+) AGACC(-/A)AGCCT intron-variant
rs1000142160 -- 154,394,347(+) GATTT(C/T)TTTTT intron-variant
rs1000171391 -- 154,431,377(+) CCCAA(A/G)AGGCC intron-variant
rs1000177408 -- 154,443,797(+) CTAAG(A/G)AAAGG intron-variant
rs1000249477 -- 154,437,113(+) GCCAA(A/G)GAAAC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SAP30L-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv830520 CNV loss 17160897
nsv524343 CNV loss 19592680
nsv5080 CNV insertion 18451855
nsv475475 CNV novel sequence insertion 20440878
nsv1073925 CNV deletion 25765185
nsv1015362 CNV gain 25217958
esv3607243 CNV loss 21293372
esv3607242 CNV loss 21293372
esv3566843 CNV deletion 23714750
esv28214 CNV loss 19812545
esv2730936 CNV deletion 23290073
esv2667405 CNV deletion 23128226
dgv3197n106 CNV deletion 24896259
dgv1052e199 CNV deletion 23128226

Relevant External Links for SAP30L-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SAP30L-AS1 Gene

Disorders for SAP30L-AS1 Gene

Relevant External Links for SAP30L-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SAP30L-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SAP30L-AS1 Gene

Publications for SAP30L-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 60
  2. A genome-wide association study of behavioral disinhibition. (PMID: 23942779) McGue M … Iacono WG (Behavior genetics 2013) 3 60
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for SAP30L-AS1 Gene

Sources for SAP30L-AS1 Gene

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