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SAP25 Gene

protein-coding   GIFtS: 31
GCID: GC07M100171

Sin3A-Associated Protein, 25kDa

  Search for SAP25
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Sin3A-Associated Protein, 25kDa1 2
25 KDa Sin3-Associated Polypeptide2 3
Sin3 Corepressor Complex Subunit SAP252 3
Histone Deacetylase Complex Subunit SAP252
Sin3-Associated Polypeptide, 25kDa2
Sin3A-Binding Protein 252

External Ids:    HGNC: 419081   Entrez Gene: 1003169042   Ensembl: ENSG000002053077   UniProtKB: Q8TEE93   

Export aliases for SAP25 gene to outside databases

Previous GC identifer: GC00U923410


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for SAP25 Gene:
SAP25 (Sin3A-associated protein, 25kDa) is a protein-coding gene.

UniProtKB/Swiss-Prot: SAP25_HUMAN, Q8TEE9
Function: Involved in the transcriptional repression mediated by the mSIN3A but not the N-CoR corepressor complex
(By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000007.14  NT_007933.16  NC_018918.2  
Regulatory elements:
   Search for regulatory transcription factor binding sites for SAP25
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for SAP25

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat SAP25


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 7q22.1   Ensembl cytogenetic band:  7q22.1   HGNC cytogenetic band: 7q22.1

SAP25 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SAP25 gene location

GeneLoc information about chromosome 7         GeneLoc Exon Structure

GeneLoc location for GC07M100171:  view genomic region     (about GC identifiers)

Start:
100,169,851 bp from pter      End:
100,171,270 bp from pter
Size:
1,420 bases      Orientation:
minus strand

1 alternative location:
Chr7-,CRA_TCAG 99,529,486-99,530,905     

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: SAP25_HUMAN, Q8TEE9 (See protein sequence)
Recommended Name: Histone deacetylase complex subunit SAP25  
Size: 199 amino acids; 20873 Da
Subunit: May be a component of the mSIN3A corepressor complex. Interacts with SIN3A. Interacts with HDAC2 (By
similarity)
Sequence caution: Sequence=BAB85001.1; Type=Miscellaneous discrepancy; Note=Intron retention;

Explore the universe of human proteins at neXtProt for SAP25: NX_Q8TEE9

Explore proteomics data for SAP25 at MOPED


See SAP25 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_001162153.1  
ENSEMBL proteins: 
 ENSP00000442339  

SAP25 Human Recombinant Protein Products:

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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ProtoNet protein and cluster: Q8TEE9


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: SAP25_HUMAN, Q8TEE9
Function: Involved in the transcriptional repression mediated by the mSIN3A but not the N-CoR corepressor complex
(By similarity)

     Gene Ontology (GO): 1 molecular function term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005515protein binding ----
     
Find genes that share ontologies with SAP25           About GenesLikeMe


Animal Models:
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
SAP25_HUMAN, Q8TEE9: Nucleus (By similarity). Cytoplasm (By similarity). Note=Shuttles between the nucleus and
the cytoplasm (By similarity)
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
cytosol2
nucleus2
extracellular1

Gene Ontology (GO): 2 cellular component terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005634nucleus IEA--
GO:0005737cytoplasm IEA--

Find genes that share ontologies with SAP25           About GenesLikeMe


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for SAP25
Interactions:

    Search GeneGlobe Interaction Network for SAP25

Selected Interacting proteins for SAP25 (Q8TEE92, 3) via UniProtKB, MINT, STRING, and/or I2D (see all 32)
InteractantInteraction Details
GeneCardExternal ID(s)
CA8P352192, 3MINT-63687 I2D: score=1 
MDFIQ997502, 3MINT-67726 I2D: score=1 
RTN4Q9NQC32, 3MINT-66461 I2D: score=1 
SIN3AQ96ST33I2D: score=3 
BRMS1Q9HCU93I2D: score=1 
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Gene Ontology (GO): 2 biological process terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0006351transcription, DNA-templated IEA--
GO:0006355regulation of transcription, DNA-templated IEA--

Find genes that share ontologies with SAP25           About GenesLikeMe



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for SAP25



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for SAP25 gene: 
NM_001168682.1  

Unigene Cluster for SAP25:

Sin3A-associated protein, 25kDa
Hs.633863  [show with all ESTs]
Unigene Representative Sequence: BI518737
1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000538735(uc022aip.1)
miRNA
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hsa-miR-505 hsa-miR-518a-5p
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Inhib. RNA
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Predesigned siRNA for gene silencing in human, mouse, rat SAP25
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6 DOTS entries:

DT.100779312  DT.121039539  DT.95283647  DT.92434260  DT.95366153  DT.100680477 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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SAP25 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: TCTGCCAGGG
SAP25 Expression
About this image

SAP25 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

SAP25 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.633863
    Custom PCR Arrays for SAP25
Primer
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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SAP25

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of human and mouse.

Orthologs for SAP25 gene from Selected species (see all 5)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Sap251 , 5 sin3 associated polypeptide1, 5 69.93(n)1
58.17(a)1
  5 (76.59 cM)5
7518651  NM_001081962.21  NP_001075431.21 
 1376413345 


ENSEMBL Gene Tree for SAP25 (if available)
TreeFam Gene Tree for SAP25 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for SAP25 gene

Find genes that share paralogs with SAP25           About GenesLikeMe


1 Pseudogenes.org Pseudogene for SAP25
PGOHUM00000248219


(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for SAP25 (see all 30)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 7 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1174596541,2
C,F--100169413(+) AGTTCG/ATGCAA 1 -- int11Minor allele frequency- A:0.03EA 120
rs1827180631,2
--100169532(+) CTCCTC/TTGAGC 1 -- int10--------
rs1490398701,2
--100169569(+) ACTGAA/CCTCCT 1 -- int10--------
rs1874068151,2
--100169683(+) CAGACC/TACCCA 1 -- int10--------
rs559765951,2
C--100169906(+) CTGAGA/GAGGCT 1 -- ut310--------
rs1157929101,2
C,F--100170022(+) CAACCG/ACGGAG 2 /A /V mis11Minor allele frequency- A:0.06WA 118
rs1922606941,2
--100170197(+) CATCTA/GAGGAG 1 -- int10--------
rs1848361541,2
--100170401(+) GTGGCA/GGGCTG 1 -- int10--------
rs1387659301,2
C--100170497(+) GGGGCA/GCCTGC 2 A V mis10--------
rs1162300601,2
F--100170498(+) GGGCGC/ACTGCT 2 /A /S mis11Minor allele frequency- A:0.01WA 118

HapMap Linkage Disequilibrium report for SAP25 (100169851 - 100171270 bp)

Structural Variations
     Database of Genomic Variants (DGV) 8 variations for SAP25:    About this table    
Variant IDTypeSubtypePubMed ID
esv2734888CNV Deletion23290073
dgv7398n71CNV Loss21882294
dgv7400n71CNV Loss21882294
nsv888789CNV Loss21882294
nsv888779CNV Loss21882294
dgv7399n71CNV Loss21882294
nsv831072CNV Loss17160897
nsv5868CNV Loss18451855

Site Specific Mutation Identification with PCR Assays
Search QIAGEN SeqTarget long-range PCR primers for resequencing SAP25
DNA2.0 Custom Variant and Variant Library Synthesis for SAP25

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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  --

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for SAP25 gene integrated from 10 sources:
(articles sorted by number of sources associating them with SAP25)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Identification and characterization of SAP25, a novel component of the mSin3 corepressor complex. (PubMed id 16449650)1, 2, 3 Shiio Y.... Eisenman R.N. (Mol. Cell. Biol. 2006)
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
  4. The SH3 domain of postsynaptic density 95 mediates inflammatory pain through phosphatidylinositol-3-kinase recruitment. (PubMed id 20467438)1 Arbuckle M.I....Grant S.G. (EMBO Rep. 2010)
  5. Expressed sequence tag analysis of human retina for the NEIBank project: retbindin, an abundant, novel retinal cDNA and alternative splicing of other retina-preferred gene transcripts. (PubMed id 12107411)1 Wistow G.... Peterson K. (Mol. Vis. 2002)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 100316904 HGNC: 41908 Ensembl:ENSG00000205307 euGenes: HUgn100316904 ECgene: SAP25
H-InvDB: SAP25

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for SAP25 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for SAP25 gene:
Search GeneIP for patents involving SAP25

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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The GeneCards human gene database gene index: 1 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

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