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Aliases & Descriptions for SAP18
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| 2HOR0202 1, 2, 3 | | MGC27131 1, 2 | | OTTHUMP00000018107 2 | | SAP18P 2 | | SAP18p 1 |
| | | Descriptions |
|---|
| Cell growth-inhibiting protein 38 3 | | Sin3-associated polypeptide p18 3 | | Sin3-associated polypeptide, 18 kDa 3 | | Sin3A-associated protein, 18kDa 1, 2 | | cell growth inhibiting protein 38 2 | | histone deacetlyase complex subunit SAP18 2 | | sin3-associated polypeptide, p18 2 |
|
| | Search outside databases for aliases for SAP18 genePrevious GC identifers: GC13P019694 GC13P015694 GC13P020644 GC13P019512 |
Summaries for SAP18(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for SAP18: Histone acetylation plays a key role in the regulation of eukaryotic gene expression. Histone acetylation and deacetylation are catalyzed by multisubunit complexes. The protein encoded by this gene is a component of the histone deacetylase complex, which includes SIN3, SAP30, HDAC1, HDAC2, RbAp46, RbAp48, and other polypeptides. This protein directly interacts with SIN3 and enhances SIN3-mediated transcriptional repression when tethered to the promoter. A pseudogene has been identified on chromosome 2. [provided by RefSeq] UniProtKB/Swiss-Prot: SAP18_HUMAN, O00422Function: Component of the SIN3-repressing complex. Enhances the ability of SIN3-HDAC1-mediated transcriptional repression. When tethered to the promoter, it can direct the formation of a repressive complex to core histone proteinsGene Wiki entry for SAP18 |
Genomic Location for SAP18
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the SAP18 gene 
Entrez Gene cytogenetic band: 13q12.11 Ensembl cytogenetic band: 13q12.11 HGNC cytogenetic band: 13q12.11SAP18 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 13 GeneLoc Exon Structure GeneLoc location for GC13P020612:
(about GC identifiers)
Start:
|
20,612,685 bp from pter |
End:
|
20,620,977 bp from pter |
Size:
|
8,293 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000013.9 NT_024524.13
| Proteins for SAP18
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: SAP18_HUMAN, O00422 (See
protein sequence)Recommended Name: Histone deacetylase complex subunit SAP18 Size: 153 amino acids; 17561 Da
Subunit: Forms a complex with SIN3A and HDAC1
PDB structures from and Proteopedia :2HDE (3D)
 
Secondary accessions: Q2TTR4 Q6IAW9 Q8N606 Q9UF14Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_005861.2
ENSEMBL proteins: ENSP00000371973
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: SAP18 
1 Gene Ontology (GO) cellular component term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0000118 | histone deacetylase complex |
TAS | 9150135 | About this table
Antibodies for SAP18: Assays for SAP18: | Protein
Domains/ Families for SAP18(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry O00422
ProtoNet protein and cluster: O00422 1 Blocks protein family: IPB010516 Sin3 associated polypeptide p18
UniProtKB/Swiss-Prot: SAP18_HUMAN, O00422Similarity: Belongs to the SAP18 family | Gene Function for SAP18
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005870
Applied Biosystems Silencer® siRNAs for SAP18
Sigma-Aldrich siRNA for SAP18  Sigma-Aldrich shRNA for SAP18  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005870                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005870                                  untagged cDNA clone in CMV expression vector: NM_005870 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_005870
UniProtKB/Swiss-Prot: SAP18_HUMAN, O00422Function: Component of the SIN3-repressing complex. Enhances the ability of SIN3-HDAC1-mediated transcriptional repression. When tethered to the promoter, it can direct the formation of a repressive complex to core histone proteins2 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for SAP18
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
1 Sigma-Aldrich "Your Favorite Gene" Pathway for SAP18 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for SAP18 
5/52 Interacting proteins for SAP18 (ENSP000003719733 O004221, 2) via UniProtKB, MINT, and/or STRING (see all 52
)About this table
2 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006350 | transcription |
IEA | -- | | GO:0006357 | regulation of transcription from RNA polymerase II promoter |
TAS | 9150135 | About this table
|
Drugs & Compounds for SAP18(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for SAP18 2 PharmGKB drug compound relationships for SAP18 geneAbout this table
|
Transcripts for SAP18(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005870
Sigma-Aldrich siRNA for SAP18  Sigma-Aldrich shRNA for SAP18  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_005870 REFSEQ mRNAs for SAP18 gene: NM_005870.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_005870               OriGene GFP tagged cDNA clone in CMV expression vector: NM_005870                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005870                                  untagged cDNA clone in CMV expression vector: NM_005870  Additional cDNA sequence: AF153608.1 AK126385.1 AK311748.1 AY550970.1 BC030836.1 CR457035.1 CR590892.1 CR592416.1 CR608964.1 CR621103.1 CR622577.1 CR623915.1 CR624098.1 CR624201.1 CR625423.1 U78303.1 U96915.1 24/28 DOTS entries (see all 28
): DT.100858998 DT.100858990 DT.92452976 DT.100858993 DT.100039100 DT.91707316 DT.100039099 DT.120783842 DT.75174980 DT.100858987 DT.92064862 DT.102824798 DT.97790728 DT.100769059 DT.100858986 DT.100858997 DT.120784024 DT.120784125 DT.97860042 DT.100759574 DT.100858999 DT.120783902 DT.120784107 DT.86840475 24/586 AceView cDNA sequences (see all 586
):BI766858 AA300677 BM543417 BF791416 AW292057 BU146799 CD366272 AA906897 CD677214 BQ425837 AW137451 BE673181 CA432834 AW951925 CR592416 AW404948 CA428923 BM982745 AI364517 BM692727 CB178465 BM679975 CD364500 CA308231
highest scoring ESTs for SAP18:AW006285 AW021542 U96915 AA025356 AA099331 AA121627 AA126817 AA165163 AA292814 AA300677 Unigene Cluster for SAP18: Sin3A-associated protein, 18kDa Hs.524899 [show with all ESTs]Unigene Representative Sequence: AK126385
GeneLoc Exon Structure
5 Alternative Splicing Database (ASD) splice patterns (SP) for SAP18
| ExUns: | 1a | · | 1b | ^ | 2a | · | 2b | ^ | 3 | ^ | 4a | · | 4b | ^ | 5a | · | 5b | · | 5c | |
| SP1: | |   | |   | |   | - |   | |   | - |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | - |   | - |   | - |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | - |   | - |   | - |   | - |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for SAP18
1 Ensembl transcript including schematic representation: ENST00000382533
|
Expression for SAP18
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| SAP18 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for SAP18
1 / 2 / 3 11 probe-sets matching SAP18 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: AGACCATATT
SOURCE GeneReport for Unigene cluster: Hs.524899
Expression variation in blood from EXPOLDB for SAP18 UniProtKB/Swiss-Prot: SAP18_HUMAN, O00422Tissue specificity: Ubiquitous |
Orthologs for SAP18
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for SAP18 gene from 5/15 species (see all 15
)
About this table Species with no ortholog for SAP18
ENSEMBL Gene Tree for SAP18 | Paralogs for SAP18(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Pseudogenes
- 2 related pseudogenes
|
SNPs/Variants for SAP18(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for SAP18 (up to first 250kb)
|
Disorders & Mutations for SAP18
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 602949
1 PharmGKB disease relationship for SAP18 geneAbout this table
|
Medical News for SAP18(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for SAP18 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/20 PubMed articles for SAP18 gene (see all 20
):- Histone deacetylases and SAP18, a novel polypeptide, are components of a human Sin3 complex. (PubMed id 9150135)1, 2, 3, 4 Zhang Y.... Reinberg D. (1997)
- The DNA sequence and analysis of human chromosome 13. (PubMed id 15057823)3, 4 Dunham A.... Ross M.T. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Structure of SAP18: a ubiquitin fold in histone deacetylase complex assembly. (PubMed id 17002296)1, 3 McCallum S.A....Fairbrother W.J. (2006)
- Large-scale mapping of human protein-protein interactions by mass spectrometry. (PubMed id 17353931)3 Ewing R.M....Figeys D. (2007)
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)3 Kimura K.... Sugano S. (2006)
- Loss of Acinus inhibits oligonucleosomal DNA fragmentation but not chromatin condensation during apoptosis. (PubMed id 16537548)3 Joselin A.P....Schwerk C. (2006)
- A human protein-protein interaction network: a resource for annotating the proteome. (PubMed id 16169070)3 Stelzl U....Wanker E.E. (2005)
- Nucleolar proteome dynamics. (PubMed id 15635413)3 Andersen J.S....Mann M. (2005)
- The negative regulator of Gli, Suppressor of fused (Sufu), interacts with SAP18, Galectin3 and other nuclear proteins. (PubMed id 14611647)3 Paces-Fessy M....Blanchet-Tournier M.F. (2004)
|
Search for SAP18
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing SAP18
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing SAP18
(According to HUGE)
About This Section
| -- |
Specialized Databases showing SAP18(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for SAP18(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for SAP18:

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GeneCards Homepage - Last full update: 1 Jul 2009
Incremental update: 13 Oct 2009
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