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Aliases for SAP130 Gene

Aliases for SAP130 Gene

  • Sin3A Associated Protein 130kDa 2 3 5
  • 130 KDa Sin3-Associated Polypeptide 4
  • Sin3A-Associated Protein, 130kDa 2
  • Sin3-Associated Polypeptide P130 4

External Ids for SAP130 Gene

Previous GeneCards Identifiers for SAP130 Gene

  • GC02M128603
  • GC02M128792
  • GC02M128415
  • GC02M121004

Summaries for SAP130 Gene

Entrez Gene Summary for SAP130 Gene

  • SAP130 is a subunit of the histone deacetylase (see HDAC1; MIM 601241)-dependent SIN3A (MIM 607776) corepressor complex (Fleischer et al., 2003 [PubMed 12724404]).[supplied by OMIM, Mar 2008]

GeneCards Summary for SAP130 Gene

SAP130 (Sin3A Associated Protein 130kDa) is a Protein Coding gene. Among its related pathways are Chromatin organization and RNA Polymerase II Transcription Initiation And Promoter Clearance. GO annotations related to this gene include transcription coactivator activity and histone acetyltransferase activity.

UniProtKB/Swiss-Prot for SAP130 Gene

  • Acts as a transcriptional repressor. May function in the assembly and/or enzymatic activity of the mSin3A corepressor complex or in mediating interactions between the complex and other regulatory complexes.

Gene Wiki entry for SAP130 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SAP130 Gene

Genomics for SAP130 Gene

Regulatory Elements for SAP130 Gene

Enhancers for SAP130 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around SAP130 on UCSC Golden Path with GeneCards custom track

Promoters for SAP130 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SAP130 on UCSC Golden Path with GeneCards custom track

Genomic Location for SAP130 Gene

Chromosome:
2
Start:
127,941,217 bp from pter
End:
128,028,120 bp from pter
Size:
86,904 bases
Orientation:
Minus strand

Genomic View for SAP130 Gene

Genes around SAP130 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SAP130 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SAP130 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SAP130 Gene

Proteins for SAP130 Gene

  • Protein details for SAP130 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H0E3-SP130_HUMAN
    Recommended name:
    Histone deacetylase complex subunit SAP130
    Protein Accession:
    Q9H0E3
    Secondary Accessions:
    • B7ZLM3
    • C9K0X9
    • Q4ZFV4
    • Q53T46
    • Q8WVW4
    • Q9H9G8

    Protein attributes for SAP130 Gene

    Size:
    1048 amino acids
    Molecular mass:
    110324 Da
    Quaternary structure:
    • Component of a mSin3A corepressor complex that contains SIN3A, SAP130, SUDS3/SAP45, ARID4B/SAP180, HDAC1 and HDAC2. Interacts (released by dead or dying cells) with CLEC4E (By similarity).

    Alternative splice isoforms for SAP130 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SAP130 Gene

Proteomics data for SAP130 Gene at MOPED

Post-translational modifications for SAP130 Gene

Other Protein References for SAP130 Gene

Antibody Products

No data available for DME Specific Peptides for SAP130 Gene

Domains & Families for SAP130 Gene

Protein Domains for SAP130 Gene

Graphical View of Domain Structure for InterPro Entry

Q9H0E3

UniProtKB/Swiss-Prot:

SP130_HUMAN :
  • The N-terminus may interact with a transcriptional coactivator.
  • Belongs to the SAP130 family.
Domain:
  • The N-terminus may interact with a transcriptional coactivator.
  • The C-terminus may interact with HDAC-dependent and HDAC-independent corepressors.
Family:
  • Belongs to the SAP130 family.
genes like me logo Genes that share domains with SAP130: view

No data available for Gene Families for SAP130 Gene

Function for SAP130 Gene

Molecular function for SAP130 Gene

UniProtKB/Swiss-Prot Function:
Acts as a transcriptional repressor. May function in the assembly and/or enzymatic activity of the mSin3A corepressor complex or in mediating interactions between the complex and other regulatory complexes.
genes like me logo Genes that share phenotypes with SAP130: view

Animal Models for SAP130 Gene

MGI Knock Outs for SAP130:

Animal Model Products

miRNA for SAP130 Gene

miRTarBase miRNAs that target SAP130

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for SAP130 Gene

Localization for SAP130 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SAP130 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SAP130 Gene COMPARTMENTS Subcellular localization image for SAP130 gene
Compartment Confidence
nucleus 5
cytosol 1

No data available for Gene Ontology (GO) - Cellular Components for SAP130 Gene

Pathways & Interactions for SAP130 Gene

genes like me logo Genes that share pathways with SAP130: view

Gene Ontology (GO) - Biological Process for SAP130 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006325 chromatin organization TAS --
GO:0006351 transcription, DNA-templated IEA --
GO:0040029 regulation of gene expression, epigenetic TAS --
GO:0043966 histone H3 acetylation IDA 11564863
GO:0045814 negative regulation of gene expression, epigenetic TAS --
genes like me logo Genes that share ontologies with SAP130: view

No data available for SIGNOR curated interactions for SAP130 Gene

Drugs & Compounds for SAP130 Gene

No Compound Related Data Available

Transcripts for SAP130 Gene

Unigene Clusters for SAP130 Gene

Sin3A-associated protein, 130kDa:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SAP130 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b ^ 13 ^ 14a · 14b ^ 15 ^ 16a · 16b · 16c · 16d ^ 17a · 17b ^ 18 ^ 19 ^
SP1: - -
SP2: - - -
SP3: - -
SP4: -
SP5: -
SP6: -
SP7: - - - - - - - - - - - -
SP8: - - -
SP9: - -
SP10: -
SP11:

ExUns: 20a · 20b · 20c · 20d ^ 21a · 21b ^ 22a · 22b ^ 23 ^ 24 ^ 25a · 25b
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:

Relevant External Links for SAP130 Gene

GeneLoc Exon Structure for
SAP130
ECgene alternative splicing isoforms for
SAP130

Expression for SAP130 Gene

mRNA expression in normal human tissues for SAP130 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for SAP130 Gene

This gene is overexpressed in CD8 Tcells (15.9) and Lymph node (9.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for SAP130 Gene



SOURCE GeneReport for Unigene cluster for SAP130 Gene Hs.32995

mRNA Expression by UniProt/SwissProt for SAP130 Gene

Q9H0E3-SP130_HUMAN
Tissue specificity: Expressed in various cancer cell ines.
genes like me logo Genes that share expression patterns with SAP130: view

Protein tissue co-expression partners for SAP130 Gene

- Elite partner

Primer Products

No data available for mRNA differential expression in normal tissues for SAP130 Gene

Orthologs for SAP130 Gene

This gene was present in the common ancestor of animals.

Orthologs for SAP130 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SAP130 35
  • 90.67 (n)
  • 97.05 (a)
SAP130 36
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SAP130 35
  • 91.72 (n)
  • 97.14 (a)
SAP130 36
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Sap130 35
  • 88.35 (n)
  • 93.75 (a)
Sap130 16
Sap130 36
  • 93 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia SAP130 35
  • 99.63 (n)
  • 100 (a)
SAP130 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Sap130 35
  • 87.36 (n)
  • 93.41 (a)
oppossum
(Monodelphis domestica)
Mammalia SAP130 36
  • 93 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SAP130 36
  • 84 (a)
OneToOne
chicken
(Gallus gallus)
Aves SAP130 35
  • 78.4 (n)
  • 88.14 (a)
SAP130 36
  • 88 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SAP130 36
  • 81 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100127690 35
  • 67.32 (n)
  • 71.46 (a)
Str.15929 35
African clawed frog
(Xenopus laevis)
Amphibia Xl.15283 35
zebrafish
(Danio rerio)
Actinopterygii sap130b 35
  • 64.57 (n)
  • 63.82 (a)
sap130a 36
  • 59 (a)
OneToMany
sap130b 36
  • 61 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta Sap130 36
  • 18 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 26 (a)
OneToOne
Species with no ortholog for SAP130:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SAP130 Gene

ENSEMBL:
Gene Tree for SAP130 (if available)
TreeFam:
Gene Tree for SAP130 (if available)

Paralogs for SAP130 Gene

No data available for Paralogs for SAP130 Gene

Variants for SAP130 Gene

Sequence variations from dbSNP and Humsavar for SAP130 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1550174 -- 127,996,280(+) CACTT(C/T)GTTTT intron-variant
rs751602 -- 127,984,364(-) ccaaa(A/G)cacct intron-variant
rs1898341 -- 127,963,108(+) TAGCC(A/G)TTAGA intron-variant
rs2897216 -- 127,994,068(+) TAAAT(A/G)CATCA intron-variant
rs2917655 -- 127,968,490(+) accac(C/T)gcact intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SAP130 Gene

Variant ID Type Subtype PubMed ID
nsv834367 CNV Loss 17160897
nsv508865 CNV Insertion 20534489
esv2720731 CNV Deletion 23290073
esv4100 CNV Deletion 18987735
esv2720732 CNV Deletion 23290073
esv1357413 CNV Deletion 17803354
esv2720733 CNV Deletion 23290073
esv2720734 CNV Deletion 23290073
esv2720735 CNV Deletion 23290073

Variation tolerance for SAP130 Gene

Residual Variation Intolerance Score: 2.34% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.65; 31.67% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for SAP130 Gene

Disorders for SAP130 Gene

Relevant External Links for SAP130

Genetic Association Database (GAD)
SAP130
Human Genome Epidemiology (HuGE) Navigator
SAP130
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SAP130

No disorders were found for SAP130 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SAP130 Gene

Publications for SAP130 Gene

  1. Identification and characterization of three new components of the mSin3A corepressor complex. (PMID: 12724404) Fleischer T.C. … Ayer D.E. (Mol. Cell. Biol. 2003) 2 3 4 23 67
  2. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 2 3
  3. Proteomic analyses reveal distinct chromatin-associated and soluble transcription factor complexes. (PMID: 25609649) Li X. … Chen J. (Mol. Syst. Biol. 2015) 3
  4. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  5. Panorama of ancient metazoan macromolecular complexes. (PMID: 26344197) Wan C. … Emili A. (Nature 2015) 3

Products for SAP130 Gene

Sources for SAP130 Gene

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