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Aliases for SAMSN1-AS1 Gene

Subcategory (RNA class) for SAMSN1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SAMSN1-AS1 Gene

  • SAMSN1 Antisense RNA 1 2 3 5
  • SAMSN1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SAMSN1-AS1 Gene

Previous GeneCards Identifiers for SAMSN1-AS1 Gene

  • GC00U931928
  • GC21P015955

Summaries for SAMSN1-AS1 Gene

GeneCards Summary for SAMSN1-AS1 Gene

SAMSN1-AS1 (SAMSN1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SAMSN1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SAMSN1-AS1 Gene

Genomics for SAMSN1-AS1 Gene

Regulatory Elements for SAMSN1-AS1 Gene

Enhancers for SAMSN1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21H014541 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11 -36.8 -36842 8.1 PKNOX1 ATF1 ZNF766 GATA2 ATF7 RUNX3 JUNB ZNF592 MBD2 SMARCA4 SAMSN1 SAMSN1-AS1 RBM11 HSPA13
GH21H014683 1.4 FANTOM5 Ensembl ENCODE 10.5 +103.8 103753 5.5 PKNOX1 IRF2 CHD4 EBF1 BATF EED ATF7 ETV6 RUNX3 IKZF2 SAMSN1 LOC388813 SAMSN1-AS1 NRIP1 LOC105372738 GC21P014744
GH21H014450 1.4 FANTOM5 ENCODE 10.3 -128.8 -128752 5 PKNOX1 ATF1 ARNT TCF12 ZNF766 GATA2 ELK1 ATF7 RUNX3 ZC3H11A SAMSN1 SAMSN1-AS1 HSPA13
GH21H014480 1.3 FANTOM5 Ensembl ENCODE 10.8 -100.1 -100102 3 L3MBTL2 ZBED1 NFIC POLR2A IKZF1 ETV6 ZBTB33 RUNX3 CREM SPI1 SAMSN1 LOC388813 SAMSN1-AS1 HSPA13
GH21H014752 1.3 ENCODE dbSUPER 10.4 +171.7 171705 2.1 PKNOX1 ATF1 ARNT TCF12 ZNF766 GATA2 ELK1 ATF7 CAVIN1 GTF2B LOC388813 SAMSN1 SAMSN1-AS1 ENSG00000232884 POLR2CP1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SAMSN1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SAMSN1-AS1 Gene

Genomic Locations for SAMSN1-AS1 Gene
chr21:14,582,202-14,598,303
(GRCh38/hg38)
Size:
16,102 bases
Orientation:
Plus strand
chr21:15,954,523-15,970,624
(GRCh37/hg19)

Genomic View for SAMSN1-AS1 Gene

Genes around SAMSN1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SAMSN1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SAMSN1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SAMSN1-AS1 Gene

Proteins for SAMSN1-AS1 Gene

Post-translational modifications for SAMSN1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SAMSN1-AS1 Gene

Domains & Families for SAMSN1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SAMSN1-AS1 Gene

Function for SAMSN1-AS1 Gene

Phenotypes From GWAS Catalog for SAMSN1-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SAMSN1-AS1 Gene

Localization for SAMSN1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SAMSN1-AS1 Gene

Pathways & Interactions for SAMSN1-AS1 Gene

SuperPathways for SAMSN1-AS1 Gene

No Data Available

Interacting Proteins for SAMSN1-AS1 Gene

Gene Ontology (GO) - Biological Process for SAMSN1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SAMSN1-AS1 Gene

Drugs & Compounds for SAMSN1-AS1 Gene

No Compound Related Data Available

Transcripts for SAMSN1-AS1 Gene

mRNA/cDNA for SAMSN1-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SAMSN1-AS1 Gene

SAMSN1 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SAMSN1-AS1 Gene

No ASD Table

Relevant External Links for SAMSN1-AS1 Gene

GeneLoc Exon Structure for
SAMSN1-AS1
ECgene alternative splicing isoforms for
SAMSN1-AS1

Expression for SAMSN1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SAMSN1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SAMSN1-AS1 Gene

This gene is overexpressed in Testis (x12.2) and Whole Blood (x4.3).

SOURCE GeneReport for Unigene cluster for SAMSN1-AS1 Gene:

Hs.563053
genes like me logo Genes that share expression patterns with SAMSN1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SAMSN1-AS1 Gene

Orthologs for SAMSN1-AS1 Gene

Evolution for SAMSN1-AS1 Gene

ENSEMBL:
Gene Tree for SAMSN1-AS1 (if available)
TreeFam:
Gene Tree for SAMSN1-AS1 (if available)

No data available for Orthologs for SAMSN1-AS1 Gene

Paralogs for SAMSN1-AS1 Gene

No data available for Paralogs for SAMSN1-AS1 Gene

Variants for SAMSN1-AS1 Gene

Sequence variations from dbSNP and Humsavar for SAMSN1-AS1 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs1000165207 -- 14,591,565(+) AAAAA(C/T)ACATC intron-variant, utr-variant-3-prime
rs1000176177 -- 14,597,484(+) TGAAG(A/G)AGGCT intron-variant
rs1000448418 -- 14,587,904(+) CCCCC(A/C)CCCCG intron-variant
rs1000486089 -- 14,584,733(+) GAACA(A/G)CTGAT intron-variant, upstream-variant-2KB
rs1000577905 -- 14,581,361(+) TTTTT(-/C)TTTTT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SAMSN1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv834046 CNV gain+loss 17160897
nsv834045 CNV loss 17160897
nsv587049 CNV loss 21841781
nsv470879 CNV gain 18288195
esv3646434 CNV gain 21293372
esv3646433 CNV gain 21293372

Relevant External Links for SAMSN1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SAMSN1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SAMSN1-AS1 Gene

Disorders for SAMSN1-AS1 Gene

Relevant External Links for SAMSN1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SAMSN1-AS1

No disorders were found for SAMSN1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SAMSN1-AS1 Gene

Publications for SAMSN1-AS1 Gene

No publications were found for SAMSN1-AS1 Gene.

Products for SAMSN1-AS1 Gene

Sources for SAMSN1-AS1 Gene

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