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Aliases for SAMSN1-AS1 Gene

Subcategory (RNA class) for SAMSN1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SAMSN1-AS1 Gene

  • SAMSN1 Antisense RNA 1 2 3 5
  • SAMSN1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SAMSN1-AS1 Gene

Previous GeneCards Identifiers for SAMSN1-AS1 Gene

  • GC00U931928
  • GC21P015955

Summaries for SAMSN1-AS1 Gene

GeneCards Summary for SAMSN1-AS1 Gene

SAMSN1-AS1 (SAMSN1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SAMSN1-AS1 Gene

Genomics for SAMSN1-AS1 Gene

Regulatory Elements for SAMSN1-AS1 Gene

Enhancers for SAMSN1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21F014607 0.3 FANTOM5 12.1 +25.3 25309 0.2 SAMSN1 SAMSN1-AS1 LOC388813 NRIP1 HSPA13
GH21F014559 0.2 Ensembl 11.4 -22.8 -22802 0.4 MTA2 IKZF1 HLF EBF1 SAMSN1 SAMSN1-AS1 LOC388813 HSPA13
GH21F014557 0.6 Ensembl 11.3 -24.5 -24502 0.6 RAD51 MTA2 IKZF1 EP300 SPI1 RELA SAMSN1-AS1 SAMSN1 LOC388813 HSPA13
GH21F014614 0.2 ENCODE 11.3 +34.7 34702 4.0 ZNF316 PKNOX1 CEBPB POU5F1 EP300 LOC388813 SAMSN1 SAMSN1-AS1 CYP4F29P
GH21F014541 1.1 FANTOM5 ENCODE 11 -37.0 -37001 7.8 PKNOX1 ATF1 GATA2 CBX5 JUNB TBX21 MBD2 SMARCA4 PBX2 STAT3 SAMSN1 SAMSN1-AS1 HSPA13
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SAMSN1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SAMSN1-AS1 Gene

Chromosome:
21
Start:
14,582,202 bp from pter
End:
14,598,303 bp from pter
Size:
16,102 bases
Orientation:
Plus strand

Genomic View for SAMSN1-AS1 Gene

Genes around SAMSN1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SAMSN1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SAMSN1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SAMSN1-AS1 Gene

Proteins for SAMSN1-AS1 Gene

Post-translational modifications for SAMSN1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SAMSN1-AS1 Gene

Domains & Families for SAMSN1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SAMSN1-AS1 Gene

Function for SAMSN1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SAMSN1-AS1 Gene

Localization for SAMSN1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SAMSN1-AS1 Gene

Pathways & Interactions for SAMSN1-AS1 Gene

SuperPathways for SAMSN1-AS1 Gene

No Data Available

Interacting Proteins for SAMSN1-AS1 Gene

Gene Ontology (GO) - Biological Process for SAMSN1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SAMSN1-AS1 Gene

Transcripts for SAMSN1-AS1 Gene

mRNA/cDNA for SAMSN1-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SAMSN1-AS1 Gene

SAMSN1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SAMSN1-AS1 Gene

No ASD Table

Relevant External Links for SAMSN1-AS1 Gene

GeneLoc Exon Structure for
SAMSN1-AS1
ECgene alternative splicing isoforms for
SAMSN1-AS1

Expression for SAMSN1-AS1 Gene

mRNA expression in normal human tissues for SAMSN1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SAMSN1-AS1 Gene

This gene is overexpressed in Testis (x12.2) and Whole Blood (x4.3).

SOURCE GeneReport for Unigene cluster for SAMSN1-AS1 Gene:

Hs.563053
genes like me logo Genes that share expression patterns with SAMSN1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SAMSN1-AS1 Gene

Orthologs for SAMSN1-AS1 Gene

Evolution for SAMSN1-AS1 Gene

ENSEMBL:
Gene Tree for SAMSN1-AS1 (if available)
TreeFam:
Gene Tree for SAMSN1-AS1 (if available)

No data available for Orthologs for SAMSN1-AS1 Gene

Paralogs for SAMSN1-AS1 Gene

No data available for Paralogs for SAMSN1-AS1 Gene

Variants for SAMSN1-AS1 Gene

Sequence variations from dbSNP and Humsavar for SAMSN1-AS1 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs10222079 -- 14,594,555(+) AAATA(C/T)ACATT intron-variant
rs10222129 -- 14,597,136(+) TTTCC(A/C)CCTTT intron-variant
rs10222136 -- 14,597,372(+) CTGTA(C/T)ATAGC intron-variant
rs10222179 -- 14,597,368(+) AATTC(A/T)GTACA intron-variant
rs111461004 -- 14,590,353(+) ACTTA(A/C/T)TGTAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SAMSN1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3646433 CNV gain 21293372
esv3646434 CNV gain 21293372
nsv470879 CNV gain 18288195
nsv587049 CNV loss 21841781
nsv834045 CNV loss 17160897
nsv834046 CNV gain+loss 17160897

Relevant External Links for SAMSN1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SAMSN1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SAMSN1-AS1 Gene

Disorders for SAMSN1-AS1 Gene

Relevant External Links for SAMSN1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SAMSN1-AS1

No disorders were found for SAMSN1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SAMSN1-AS1 Gene

Publications for SAMSN1-AS1 Gene

No publications were found for SAMSN1-AS1 Gene.

Products for SAMSN1-AS1 Gene

Sources for SAMSN1-AS1 Gene

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