Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SAMSN1-AS1 Gene

Subcategory (RNA class) for SAMSN1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SAMSN1-AS1 Gene

  • SAMSN1 Antisense RNA 1 2 3 5
  • SAMSN1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SAMSN1-AS1 Gene

Previous GeneCards Identifiers for SAMSN1-AS1 Gene

  • GC00U931928
  • GC21P015955

Summaries for SAMSN1-AS1 Gene

GeneCards Summary for SAMSN1-AS1 Gene

SAMSN1-AS1 (SAMSN1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SAMSN1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SAMSN1-AS1 Gene

Genomics for SAMSN1-AS1 Gene

Regulatory Elements for SAMSN1-AS1 Gene

Enhancers for SAMSN1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21H014541 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11 -36.8 -36842 8 PKNOX1 ATF1 ZNF766 GATA2 ATF7 RUNX3 JUNB ZNF592 MBD2 SMARCA4 SAMSN1 SAMSN1-AS1 RBM11 HSPA13
GH21H014683 1.4 FANTOM5 Ensembl ENCODE 10.5 +103.8 103753 5 PKNOX1 IRF2 CHD4 EBF1 BATF EED ATF7 ETV6 RUNX3 IKZF2 SAMSN1 LOC388813 SAMSN1-AS1 NRIP1 LOC105372738 GC21P014744
GH21H014450 1.4 FANTOM5 ENCODE 10.3 -128.8 -128752 4 PKNOX1 ATF1 ARNT TCF12 ZNF766 GATA2 ELK1 ATF7 RUNX3 ZC3H11A SAMSN1 SAMSN1-AS1 HSPA13
GH21H014480 1.3 FANTOM5 Ensembl ENCODE 10.8 -100.1 -100102 2 L3MBTL2 ZBED1 NFIC POLR2A IKZF1 ETV6 ZBTB33 RUNX3 CREM SPI1 SAMSN1 LOC388813 SAMSN1-AS1 HSPA13
GH21H014752 1.3 ENCODE dbSUPER 10.4 +171.7 171705 2 PKNOX1 ATF1 ARNT TCF12 ZNF766 GATA2 ELK1 ATF7 CAVIN1 GTF2B LOC388813 SAMSN1 SAMSN1-AS1 ENSG00000232884 POLR2CP1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SAMSN1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SAMSN1-AS1 Gene

Chromosome:
21
Start:
14,582,202 bp from pter
End:
14,598,303 bp from pter
Size:
16,102 bases
Orientation:
Plus strand

Genomic View for SAMSN1-AS1 Gene

Genes around SAMSN1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SAMSN1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SAMSN1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SAMSN1-AS1 Gene

Proteins for SAMSN1-AS1 Gene

Post-translational modifications for SAMSN1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SAMSN1-AS1 Gene

Domains & Families for SAMSN1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SAMSN1-AS1 Gene

Function for SAMSN1-AS1 Gene

Phenotypes From GWAS Catalog for SAMSN1-AS1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SAMSN1-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SAMSN1-AS1 Gene

Localization for SAMSN1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SAMSN1-AS1 Gene

Pathways & Interactions for SAMSN1-AS1 Gene

SuperPathways for SAMSN1-AS1 Gene

No Data Available

Interacting Proteins for SAMSN1-AS1 Gene

Gene Ontology (GO) - Biological Process for SAMSN1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SAMSN1-AS1 Gene

Drugs & Compounds for SAMSN1-AS1 Gene

No Compound Related Data Available

Transcripts for SAMSN1-AS1 Gene

mRNA/cDNA for SAMSN1-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SAMSN1-AS1 Gene

SAMSN1 antisense RNA 1:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SAMSN1-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SAMSN1-AS1 Gene

No ASD Table

Relevant External Links for SAMSN1-AS1 Gene

GeneLoc Exon Structure for
SAMSN1-AS1
ECgene alternative splicing isoforms for
SAMSN1-AS1

Expression for SAMSN1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SAMSN1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SAMSN1-AS1 Gene

This gene is overexpressed in Testis (x12.2) and Whole Blood (x4.3).

SOURCE GeneReport for Unigene cluster for SAMSN1-AS1 Gene:

Hs.563053
genes like me logo Genes that share expression patterns with SAMSN1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SAMSN1-AS1 Gene

Orthologs for SAMSN1-AS1 Gene

Evolution for SAMSN1-AS1 Gene

ENSEMBL:
Gene Tree for SAMSN1-AS1 (if available)
TreeFam:
Gene Tree for SAMSN1-AS1 (if available)

No data available for Orthologs for SAMSN1-AS1 Gene

Paralogs for SAMSN1-AS1 Gene

No data available for Paralogs for SAMSN1-AS1 Gene

Variants for SAMSN1-AS1 Gene

Sequence variations from dbSNP and Humsavar for SAMSN1-AS1 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs1000165207 -- 14,591,565(+) AAAAA(C/T)ACATC intron-variant, utr-variant-3-prime
rs1000176177 -- 14,597,484(+) TGAAG(A/G)AGGCT intron-variant
rs1000448418 -- 14,587,904(+) CCCCC(A/C)CCCCG intron-variant
rs1000486089 -- 14,584,733(+) GAACA(A/G)CTGAT intron-variant, upstream-variant-2KB
rs1000577905 -- 14,581,361(+) TTTTT(-/C)TTTTT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SAMSN1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3646433 CNV gain 21293372
esv3646434 CNV gain 21293372
nsv470879 CNV gain 18288195
nsv587049 CNV loss 21841781
nsv834045 CNV loss 17160897
nsv834046 CNV gain+loss 17160897

Relevant External Links for SAMSN1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SAMSN1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SAMSN1-AS1 Gene

Disorders for SAMSN1-AS1 Gene

Relevant External Links for SAMSN1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SAMSN1-AS1

No disorders were found for SAMSN1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SAMSN1-AS1 Gene

Publications for SAMSN1-AS1 Gene

No publications were found for SAMSN1-AS1 Gene.

Products for SAMSN1-AS1 Gene

Sources for SAMSN1-AS1 Gene

Content
Loading form....