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Aliases & Descriptions for SAMD9L
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| C7orf6 2, 3 | | DRIF2 2, 3 | | FLJ39885 1, 2 | | KIAA2005 1, 2, 3 | | UEF 3 | | UEF1 2 |
| | | Descriptions |
|---|
| chromosome 7 open reading frame 6 1 | | sterile alpha motif domain containing 9-like 2 |
|
| | Search outside databases for aliases for SAMD9L genePrevious GC identifer: GC07M092405 |
Summaries for SAMD9L(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| -- |
Genomic Location for SAMD9L
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the SAMD9L gene 
Entrez Gene cytogenetic band: 7q21.2-q21.3 Ensembl cytogenetic band: 7q21.3 HGNC cytogenetic band: 7q21.2SAMD9L Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 7 GeneLoc Exon Structure GeneLoc location for GC07M092597:
(about GC identifiers)
Start:
|
92,597,304 bp from pter |
End:
|
92,615,616 bp from pter |
Size:
|
18,313 bases |
Orientation:
|
minus strand |
1 alternative location:
| Chr7-,CRA_TCAG 92,088,687-92,106,998 |
RefSeq DNA sequence:- NC_000007.12 NT_007933.14 NT_079595.2
| Proteins for SAMD9L
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: SAM9L_HUMAN, Q8IVG5 (See
protein sequence)Recommended Name: Sterile alpha motif domain-containing protein 9-like Size: 1584 amino acids; 184533 Da
Sequence caution: Sequence=AAI27118.1; Type=Frameshift; Positions=1259; Sequence=AAI27119.1; Type=Frameshift; Positions=1516;
Secondary accessions: A0JP23 A0JP24 A0PJG8 A4D1G8 Q2TV71 Q2TV75 Q2UZV8 Q8IWI4 Q8N3L9 Q8N875Alternative splicing: 2 isoforms: Q8IVG5-1 Q8IVG5-2 Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_689916.2
ENSEMBL proteins: ENSP00000326247 ENSP00000377983
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
Antibodies for SAMD9L: Assays for SAMD9L: | Protein
Domains/ Families for SAMD9L(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q8IVG5
ProtoNet protein and cluster: Q8IVG5 1 Blocks protein family: IPB001660 Sterile alpha motif SAM
UniProtKB/Swiss-Prot: SAM9L_HUMAN, Q8IVG5Similarity: Contains 1 SAM (sterile alpha motif) domain | Gene Function for SAMD9L
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_152703
Applied Biosystems Silencer® siRNAs for SAMD9L
Sigma-Aldrich siRNA for SAMD9L  Sigma-Aldrich shRNA for SAMD9L  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_152703                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_152703                                  untagged cDNA clones in CMV expression vector (see all 2): NM_152703 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_152703
| Pathways & Interactions for SAMD9L
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
2 Interacting proteins for SAMD9L (ENSP000003262473) via UniProtKB, MINT, and/or STRINGAbout this table
|
Drugs & Compounds for SAMD9L(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for SAMD9L
|
Transcripts for SAMD9L(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_152703
Sigma-Aldrich siRNA for SAMD9L  Sigma-Aldrich shRNA for SAMD9L  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_152703 REFSEQ mRNAs for SAMD9L gene: NM_152703.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_152703               OriGene GFP tagged cDNA clone in CMV expression vector: NM_152703                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_152703                                  untagged cDNA clones in CMV expression vector (see all 2): NM_152703  Additional cDNA sequence: AB095926.1 AF474973.1 AK026672.1 AK097204.1 AK304307.1 AK304779.1 AL832264.1 AL834232.1 AY195582.1 AY195583.1 AY195584.1 AY195585.1 AY195586.1 AY195587.1 AY195588.1 BC029108.1 BC038974.1 BC127117.1 BC127118.1 DQ068177.1 4 DOTS entries: DT.303533 DT.95322412 DT.91701818 DT.121046737 24/92 AceView cDNA sequences (see all 92
):BC029108 AI457736 BE675526 AA490264 BQ433442 BU507807 AA490365 AW675618 AL832264 AW294127 AK097204 AI139687 BG236517 AI674920 BF058148 AA988857 NM_152703 BM470525 AA648507 AI087313 AA253288 BU190148 AW337195 AB095926
highest scoring ESTs for SAMD9L:AA215579 AB095926 AI038997 AI309599 CB267658 CB957001 W19045 AA215765 AA622528 AA648507 Unigene Cluster for SAMD9L: Sterile alpha motif domain containing 9-like Hs.489118 [show with all ESTs]Unigene Representative Sequence: NM_152703
GeneLoc Exon Structure
3 Alternative Splicing Database (ASD) splice patterns (SP) for SAMD9L
| ExUns: | 1a | · | 1b | ^ | 2a | · | 2b | ^ | 3a | · | 3b | ^ | 4 | ^ | 5 | ^ | 6 | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | - |   | |   | - |   | |   | |   | |   | |
| SP3: | |   | |   | - |   | - |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for SAMD9L
2 Ensembl transcripts including schematic representations: ENST00000318238
ENST00000394472
|
Expression for SAMD9L
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| SAMD9L expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for SAMD9L
1 / 2 / 3 10 probe-sets matching SAMD9L gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: --
SOURCE GeneReport for Unigene cluster: Hs.489118 UniProtKB/Swiss-Prot: SAM9L_HUMAN, Q8IVG5Tissue specificity: Widely expressed in adult and fetal tissues. Variable expression in tumors. Down-regulated in breast cancer |
Orthologs for SAMD9L
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for SAMD9L gene from 5/6 species (see all 6
)
About this table Species with no ortholog for SAMD9L
ENSEMBL Gene Tree for SAMD9L | Paralogs for SAMD9L(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for SAMD9L gene
- SAMD92
|
SNPs/Variants for SAMD9L(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for SAMD9L (up to first 250kb)
|
Disorders & Mutations for SAMD9L
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 611170
|
Medical News for SAMD9L(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for SAMD9L (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 7 PubMed articles for SAMD9L gene:- Human sterile alpha motif domain 9, a novel gene identified as down- regulated in aggressive fibromatosis, is absent in the mouse. (PubMed id 17407603)3, 4 Li C.F.... Alman B.A. (2007)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)3, 4 Ota T....Sugano S. (2004)
- Human chromosome 7: DNA sequence and biology. (PubMed id 12690205)3, 4 Scherer S.W....Tsui L.C. (2003)
- The full-ORF clone resource of the German cDNA Consortium. (PubMed id 17974005)4 Bechtel S....Schupp I. (2007)
- Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)4 Olsen J.V....Mann M. (2006)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)4 Gerhard D.S....Malek J. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)3 Strausberg R.L....Marra M.A. (2002)
|
Search for SAMD9L
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing SAMD9L
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing SAMD9L
(According to HUGE)
About This Section
| |
Specialized Databases showing SAMD9L(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for SAMD9L(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for SAMD9L:

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Incremental update: 13 Oct 2009
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