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Aliases for SAMD7 Gene

Aliases for SAMD7 Gene

  • Sterile Alpha Motif Domain Containing 7 2 3 5
  • SAM Domain-Containing Protein 7 4

External Ids for SAMD7 Gene

Previous GeneCards Identifiers for SAMD7 Gene

  • GC03P170950
  • GC03P171112
  • GC03P169629
  • GC03P166999

Summaries for SAMD7 Gene

GeneCards Summary for SAMD7 Gene

SAMD7 (Sterile Alpha Motif Domain Containing 7) is a Protein Coding gene. Diseases associated with SAMD7 include Retinitis Pigmentosa. An important paralog of this gene is SAMD11.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SAMD7 Gene

Genomics for SAMD7 Gene

Regulatory Elements for SAMD7 Gene

Enhancers for SAMD7 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G169938 1.5 Ensembl ENCODE dbSUPER 11.3 +35.6 35561 4.2 PKNOX1 FOXA2 FEZF1 ZNF2 TCF12 GLIS2 GATA2 CBX5 ZNF263 JUNB PRKCI LOC100128164 SEC62 LRRC31 SAMD7 GPR160 LRRC34 LRRIQ4 GC03P169939 ENSG00000244193
GH03G169944 1.6 Ensembl ENCODE dbSUPER 10.5 +40.4 40438 2.3 PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B CBX5 ZNF143 KLF13 LOC100128164 ENSG00000270096 SEC62 LRRC31 GPR160 SAMD7 LRRIQ4 LRRC34 SLC7A14 PRKCI
GH03G169953 1.3 Ensembl ENCODE dbSUPER 10.5 +49.2 49203 1.9 ZNF175 ZIC2 ZNF644 RELA ZNF766 POLR2A GATA2 ELK1 CBX5 EED LOC100128164 LRRC31 SAMD7 LRRIQ4 LRRC34 GPR160 ENSG00000244193 SEC62
GH03G170006 1.2 Ensembl ENCODE dbSUPER 10.8 +102.1 102061 0.9 ELF3 MCM3 ETV1 CEBPB ZNF175 ELF1 CEBPG ZNF644 GABPA FOXA1 GPR160 LOC100128164 RNU4-38P SAMD7 LRRC34 LRRIQ4 SEC62 SEC62-AS1
GH03G169952 1.2 FANTOM5 Ensembl dbSUPER 10.5 +47.4 47378 0.6 ZNF157 HLF ATF2 EZH2 SKIL ENSG00000270096 LRRC31 SAMD7 LRRC34 LRRIQ4 SEC62 ENSG00000244193
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SAMD7 on UCSC Golden Path with GeneCards custom track

Genomic Location for SAMD7 Gene

Chromosome:
3
Start:
169,905,106 bp from pter
End:
169,939,175 bp from pter
Size:
34,070 bases
Orientation:
Plus strand

Genomic View for SAMD7 Gene

Genes around SAMD7 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SAMD7 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SAMD7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SAMD7 Gene

Proteins for SAMD7 Gene

  • Protein details for SAMD7 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q7Z3H4-SAMD7_HUMAN
    Recommended name:
    Sterile alpha motif domain-containing protein 7
    Protein Accession:
    Q7Z3H4

    Protein attributes for SAMD7 Gene

    Size:
    446 amino acids
    Molecular mass:
    49112 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SAMD7 Gene

Post-translational modifications for SAMD7 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SAMD7 Gene

No data available for DME Specific Peptides for SAMD7 Gene

Domains & Families for SAMD7 Gene

Gene Families for SAMD7 Gene

Protein Domains for SAMD7 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for SAMD7 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SAMD7: view

No data available for UniProtKB/Swiss-Prot for SAMD7 Gene

Function for SAMD7 Gene

genes like me logo Genes that share phenotypes with SAMD7: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for SAMD7

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SAMD7 Gene

Localization for SAMD7 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SAMD7 gene
Compartment Confidence
nucleus 2
cytosol 2
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SAMD7 Gene

Pathways & Interactions for SAMD7 Gene

SuperPathways for SAMD7 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SAMD7 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SAMD7 Gene

Drugs & Compounds for SAMD7 Gene

No Compound Related Data Available

Transcripts for SAMD7 Gene

mRNA/cDNA for SAMD7 Gene

(2) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(9) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SAMD7 Gene

Sterile alpha motif domain containing 7:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for SAMD7

Alternative Splicing Database (ASD) splice patterns (SP) for SAMD7 Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9
SP1: -
SP2:

Relevant External Links for SAMD7 Gene

GeneLoc Exon Structure for
SAMD7
ECgene alternative splicing isoforms for
SAMD7

Expression for SAMD7 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SAMD7 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SAMD7 Gene

This gene is overexpressed in Testis (x11.7) and Spleen (x5.0).

Protein differential expression in normal tissues from HIPED for SAMD7 Gene

This gene is overexpressed in Heart (37.2) and Retina (31.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for SAMD7 Gene



Protein tissue co-expression partners for SAMD7 Gene

NURSA nuclear receptor signaling pathways regulating expression of SAMD7 Gene:

SAMD7

SOURCE GeneReport for Unigene cluster for SAMD7 Gene:

Hs.439922
genes like me logo Genes that share expression patterns with SAMD7: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SAMD7 Gene

Orthologs for SAMD7 Gene

This gene was present in the common ancestor of animals.

Orthologs for SAMD7 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SAMD7 34 35
  • 98.95 (n)
dog
(Canis familiaris)
Mammalia SAMD7 34 35
  • 85.72 (n)
cow
(Bos Taurus)
Mammalia SAMD7 34 35
  • 82.74 (n)
mouse
(Mus musculus)
Mammalia Samd7 34 16 35
  • 77.55 (n)
rat
(Rattus norvegicus)
Mammalia Samd7 34
  • 76.03 (n)
oppossum
(Monodelphis domestica)
Mammalia SAMD7 35
  • 40 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SAMD7 35
  • 37 (a)
OneToOne
chicken
(Gallus gallus)
Aves SAMD7 35
  • 38 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SAMD7 35
  • 44 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii samd7 35
  • 29 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta Samuel 35
  • 8 (a)
OneToMany
Species where no ortholog for SAMD7 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SAMD7 Gene

ENSEMBL:
Gene Tree for SAMD7 (if available)
TreeFam:
Gene Tree for SAMD7 (if available)

Paralogs for SAMD7 Gene

Paralogs for SAMD7 Gene

genes like me logo Genes that share paralogs with SAMD7: view

Variants for SAMD7 Gene

Sequence variations from dbSNP and Humsavar for SAMD7 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000096728 -- 169,915,429(+) CCACG(A/G)CTTTT nc-transcript-variant, utr-variant-5-prime
rs1000147407 -- 169,915,697(+) CTCCT(C/G)CCCCA intron-variant
rs1000210595 -- 169,920,392(+) ATCCC(A/T)GGTAT intron-variant
rs1000242824 -- 169,929,599(+) TTTTC(C/T)GGTTG intron-variant
rs1000526160 -- 169,928,207(+) GTTGT(A/C)ATCTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SAMD7 Gene

Variant ID Type Subtype PubMed ID
esv2663940 CNV deletion 23128226
esv2726188 CNV deletion 23290073
esv3598608 CNV gain 21293372
esv3598614 CNV gain 21293372
esv3598615 CNV loss 21293372
nsv460987 CNV loss 19166990
nsv592505 CNV loss 21841781
nsv7356 OTHER inversion 18451855

Variation tolerance for SAMD7 Gene

Residual Variation Intolerance Score: 58.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.42; 77.18% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SAMD7 Gene

Human Gene Mutation Database (HGMD)
SAMD7
SNPedia medical, phenotypic, and genealogical associations of SNPs for
SAMD7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SAMD7 Gene

Disorders for SAMD7 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SAMD7 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
retinitis pigmentosa
  • retinitis pigmentosa 1
- elite association - COSMIC cancer census association via MalaCards
Search SAMD7 in MalaCards View complete list of genes associated with diseases

Relevant External Links for SAMD7

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SAMD7
genes like me logo Genes that share disorders with SAMD7: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SAMD7 Gene

Publications for SAMD7 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  2. Autosomal recessive retinitis pigmentosa with homozygous rhodopsin mutation E150K and non-coding cis-regulatory variants in CRX-binding regions of SAMD7. (PMID: 26887858) Van Schil K. … De Baere E. (Sci Rep 2016) 3 64
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  4. Sterile alpha motif containing 7 (samd7) is a novel crx-regulated transcriptional repressor in the retina. (PMID: 23565263) Hlawatsch J. … Langmann T. (PLoS ONE 2013) 3 64
  5. A synthetic interaction screen identifies factors selectively required for proliferation and TERT transcription in p53-deficient human cancer cells. (PMID: 23284306) Xie L. … Green M.R. (PLoS Genet. 2012) 3 64

Products for SAMD7 Gene

  • Addgene plasmids for SAMD7

Sources for SAMD7 Gene

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