 |
 | Services
| |
 |
Aliases &
Descriptions
for SAMD5
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase)
About This Section
|
| Aliases |
|---|
| OTTHUMP00000017385 2 | | SAMDC1 3 | | dJ875H10.1 1, 2 |
| | | Descriptions |
|---|
| SAM domain containing 1 2 | | sterile alpha motif domain containing 5 2 |
|
| |
Search outside databases for aliases for SAMD5 genePrevious GC identifers: GC00U914193 GC06U900641 |
Summaries
for SAMD5(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| -- |
Genomic Location
for SAMD5
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences)
About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 6q24.3 Ensembl cytogenetic band: 6q24.3 HGNC cytogenetic band: 6q24.3SAMD5 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc gene densities for chromosome 6 GeneLoc Exon Structure GeneLoc location for GC06P147873:
(about GC identifiers)
Start:
|
147,871,756 bp from pter |
End:
|
147,932,850 bp from pter |
Size:
|
61,095 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000006.10 NT_025741.14
| Proteins
for SAMD5
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: SAMD5_HUMAN, Q5TGI4 (See
protein sequence)Recommended Name: Sterile alpha motif domain-containing protein 5 Size: 173 amino acids; 19231 DaREFSEQ proteins: NP_001025231.1
ENSEMBL proteins: ENSP00000356444
Human Recombinant Proteins  Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
Antibodies for SAMD5:
Assays for SAMD5: | Protein
Domains/
Families
for SAMD5(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q5TGI4
ProtoNet protein and cluster: Q5TGI4 1 Blocks protein family: IPB001660 Sterile alpha motif SAM
UniProtKB/Swiss-Prot: SAMD5_HUMAN, Q5TGI4Similarity: Contains 1 SAM (sterile alpha motif) domain | Gene Function
for SAMD5
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001030060
 Applied Biosystems Silencer® siRNAs for SAMD5
 Sigma-Aldrich siRNA for SAMD5
Sigma-Aldrich shRNA for SAMD5
Explore Sigma-Aldrich super-pooled esiRNAs
OriGene GFP tagged cDNA clone in CMV expression vector: NM_001030060
Myc/DDK tagged cDNA clone in CMV expression vector: NM_001030060
untagged cDNA clones in CMV expression vector (see all 2): BC018908
Primers:  Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
OriGene genome-wide validated SYBR primer pairs: NM_001030060
| Pathways & Interactions
for SAMD5
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
1 Interacting protein for SAMD5 (ENSP000003564443) via UniProtKB, MINT, and/or STRINGAbout this table
|
Drugs & Compounds
for SAMD5(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
 Browse Tocris compounds for SAMD5
|
Transcripts
for SAMD5(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene,
Expression Assays from Applied Biosystems)
About This Section
| OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001030060
Sigma-Aldrich siRNA for SAMD5
Sigma-Aldrich shRNA for SAMD5
Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer® siRNAs: NM_001030060 REFSEQ mRNAs for SAMD5 gene: NM_001030060.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001030060
OriGene GFP tagged cDNA clone in CMV expression vector: NM_001030060
Myc/DDK tagged cDNA clone in CMV expression vector: NM_001030060
untagged cDNA clones in CMV expression vector (see all 2): BC018908
Additional cDNA sequence: BC020896.1 2 DOTS entries: DT.91741375 DT.407224 24/70 AceView cDNA sequences (see all 70
):BF115069 AA252168 CA942632 BU102088 BX110596 BM311407 BX099467 AA242983 AW274555 AA452295 AA582100 CA843432 AA886794 BM717307 BX099879 BM312000 AI435785 AI700341 AA039712 BG204892 BG204894 BC020896 BU739124 BF109382
 highest scoring ESTs for SAMD5:AA252168 AA452295 AA039712 AA039713 AA242983 AA359571 AA453400 AA453908 AA582100 AA886794 Unigene Cluster for SAMD5: Sterile alpha motif domain containing 5 Hs.567973 [show with all ESTs]Unigene Representative Sequence: NM_001030060
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000367474
|
Expression
for SAMD5
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| SAMD5 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for SAMD5
1 / 2 / 3 7 probe-sets matching SAMD5 gene Data from
(Publications) and GNF BioGPS
About these images
About these images
CGAP SAGE TAG: CACACTGTGA
SOURCE GeneReport for Unigene cluster: Hs.567973
|
Orthologs
for SAMD5
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for SAMD5 gene from 5/6 species (see all 6
)
About this table Species with no ortholog for SAMD5
ENSEMBL Gene Tree for SAMD5 | Paralogs
for SAMD5(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section
| -- |
SNPs/Variants
for SAMD5(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for SAMD5 (up to first 250kb)
|
Disorders & Mutations
for SAMD5
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
| -- |
Medical News
for SAMD5(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications
for SAMD5 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 2 PubMed articles for SAMD5 gene: |
Search for SAMD5
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing SAMD5
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing SAMD5
(According to HUGE)
About This Section
| -- |
Specialized Databases showing SAMD5(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| About This Section
| --
| Services
for SAMD5(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section
| 
Products for SAMD5:
 | |
 | | | | |
 |
 |  |  | |
| | |  | Search Tocris compounds for SAMD5 |
|
 |
 | | |
|
GeneCards Homepage - Last full update: 1 Jul 2009
Incremental update: 13 Oct 2009
|
V3 here soon-try beta now
