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Aliases for SAMD15 Gene

Aliases for SAMD15 Gene

  • Sterile Alpha Motif Domain Containing 15 2 3
  • Family With Sequence Similarity 15, Member A 2 3
  • SAM Domain-Containing Protein 15 3 4
  • C14orf174 3 4
  • FAM15A 3 4
  • Sterile Alpha Motif Domain-Containing Protein 15 3
  • SAM Domain-Containing Protein C14orf174 3
  • Chromosome 14 Open Reading Frame 174 2

External Ids for SAMD15 Gene

Previous HGNC Symbols for SAMD15 Gene

  • FAM15A
  • C14orf174

Previous GeneCards Identifiers for SAMD15 Gene

  • GC14P077844

Summaries for SAMD15 Gene

GeneCards Summary for SAMD15 Gene

SAMD15 (Sterile Alpha Motif Domain Containing 15) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SAMD15 Gene

Genomics for SAMD15 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for SAMD15 Gene

Start:
77,376,689 bp from pter
End:
77,391,497 bp from pter
Size:
14,809 bases
Orientation:
Plus strand

Genomic View for SAMD15 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SAMD15 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SAMD15 Gene

No data available for Regulatory Elements for SAMD15 Gene

Proteins for SAMD15 Gene

  • Protein details for SAMD15 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9P1V8-SAM15_HUMAN
    Recommended name:
    Sterile alpha motif domain-containing protein 15
    Protein Accession:
    Q9P1V8
    Secondary Accessions:
    • Q2M3P3

    Protein attributes for SAMD15 Gene

    Size:
    674 amino acids
    Molecular mass:
    77151 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for SAMD15 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SAMD15 Gene

Proteomics data for SAMD15 Gene at MOPED

Post-translational modifications for SAMD15 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SAMD15 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SAMD15 Gene

Domains for SAMD15 Gene

Gene Families for SAMD15 Gene

HGNC:
  • SAMD :Sterile alpha motif (SAM) domain containing

Protein Domains for SAMD15 Gene

Suggested Antigen Peptide Sequences for SAMD15 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9P1V8

UniProtKB/Swiss-Prot:

SAM15_HUMAN :
  • Q9P1V8
Domain:
  • Contains 1 SAM (sterile alpha motif) domain.
genes like me logo Genes that share domains with SAMD15: view

Function for SAMD15 Gene

Gene Ontology (GO) - Molecular Function for SAMD15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with SAMD15: view

Phenotypes for SAMD15 Gene

GenomeRNAi human phenotypes for SAMD15:
genes like me logo Genes that share phenotypes with SAMD15: view

Animal Model Products

CRISPR Products

miRNA for SAMD15 Gene

miRTarBase miRNAs that target SAMD15

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SAMD15

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for SAMD15 Gene

Localization for SAMD15 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SAMD15 Gene

Pathways for SAMD15 Gene

SuperPathways for SAMD15 Gene

No Data Available

Interacting Proteins for SAMD15 Gene

Gene Ontology (GO) - Biological Process for SAMD15 Gene

None

No data available for Pathways by source for SAMD15 Gene

Transcripts for SAMD15 Gene

mRNA/cDNA for SAMD15 Gene

(15) Selected AceView cDNA sequences:
(4) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SAMD15 Gene

Sterile alpha motif domain containing 15:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SAMD15

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for SAMD15
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SAMD15 Gene

No ASD Table

Relevant External Links for SAMD15 Gene

GeneLoc Exon Structure for
SAMD15
ECgene alternative splicing isoforms for
SAMD15

Expression for SAMD15 Gene

mRNA expression in normal human tissues for SAMD15 Gene

mRNA differential expression in normal tissues according to GTEx for SAMD15 Gene

This gene is overexpressed in Testis (17.5).

SOURCE GeneReport for Unigene cluster for SAMD15 Gene Hs.421961

genes like me logo Genes that share expressions with SAMD15: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for SAMD15 Gene

Orthologs for SAMD15 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SAMD15 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SAMD15 35
  • 98.91 (n)
  • 97.33 (a)
SAMD15 36
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SAMD15 35
  • 72.18 (n)
  • 56.08 (a)
SAMD15 36
  • 53 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SAMD15 35
  • 73.34 (n)
  • 55.52 (a)
SAMD15 36
  • 53 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Samd15 35
  • 64.04 (n)
  • 51.44 (a)
Samd15 16
Samd15 36
  • 38 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SAMD15 36
  • 31 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SAMD15 36
  • 31 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Samd15 35
  • 53.91 (n)
  • 38.59 (a)
chicken
(Gallus gallus)
Aves SAMD15 36
  • 45 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SAMD15 36
  • 69 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 42 (a)
OneToOne
Species with no ortholog for SAMD15:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SAMD15 Gene

ENSEMBL:
Gene Tree for SAMD15 (if available)
TreeFam:
Gene Tree for SAMD15 (if available)

Paralogs for SAMD15 Gene

No data available for Paralogs for SAMD15 Gene

Variants for SAMD15 Gene

Sequence variations from dbSNP and Humsavar for SAMD15 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type MAF
rs1012468 -- 77,387,021(+) TTAGA(A/C)AACTA intron-variant
rs3075828 -- 77,385,865(+) TTTTT(-/TT)GAGGC intron-variant
rs4899652 -- 77,382,629(+) GTTCT(A/G)TTTAA intron-variant
rs4903577 -- 77,380,915(+) AGGGC(C/T)CTCCA intron-variant
rs4903578 -- 77,384,520(+) TGCTC(A/G)AATTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SAMD15 Gene

Variant ID Type Subtype PubMed ID
nsv902107 CNV Loss 21882294
nsv1362 CNV Loss 18451855

Relevant External Links for SAMD15 Gene

HapMap Linkage Disequilibrium report
SAMD15

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SAMD15 Gene

Disorders for SAMD15 Gene

No disorders were found for SAMD15 Gene.

No data available for UniProtKB/Swiss-Prot for SAMD15 Gene

Publications for SAMD15 Gene

  1. The DNA sequence and analysis of human chromosome 14. (PMID: 12508121) Heilig R. … Weissenbach J. (Nature 2003) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for SAMD15 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate SAMD15
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SAMD15
    • Block miRNA regulation of SAMD15 using miScript Target Protectors

    Sources for SAMD15 Gene

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