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Aliases for SAMD12-AS1 Gene

Subcategory (RNA class) for SAMD12-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SAMD12-AS1 Gene

  • SAMD12 Antisense RNA 1 2 3
  • SAMD12 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 8 Open Reading Frame 26 2
  • Non-Protein Coding RNA 252 2
  • NCRNA00252 3
  • C8orf26 3

External Ids for SAMD12-AS1 Gene

Previous HGNC Symbols for SAMD12-AS1 Gene

  • C8orf26
  • NCRNA00252

Previous GeneCards Identifiers for SAMD12-AS1 Gene

  • GC08U901557
  • GC08P119635

Summaries for SAMD12-AS1 Gene

GeneCards Summary for SAMD12-AS1 Gene

SAMD12-AS1 (SAMD12 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SAMD12-AS1 Gene

Genomics for SAMD12-AS1 Gene

Genomic Location for SAMD12-AS1 Gene

Chromosome:
8
Start:
118,621,001 bp from pter
End:
118,858,218 bp from pter
Size:
237,218 bases
Orientation:
Plus strand

Genomic View for SAMD12-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SAMD12-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SAMD12-AS1 Gene

No data available for Regulatory Elements for SAMD12-AS1 Gene

Proteins for SAMD12-AS1 Gene

Post-translational modifications for SAMD12-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SAMD12-AS1 Gene

Domains & Families for SAMD12-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SAMD12-AS1 Gene

Function for SAMD12-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SAMD12-AS1 Gene

Localization for SAMD12-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SAMD12-AS1 Gene

Pathways & Interactions for SAMD12-AS1 Gene

SuperPathways for SAMD12-AS1 Gene

No Data Available

Interacting Proteins for SAMD12-AS1 Gene

Gene Ontology (GO) - Biological Process for SAMD12-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SAMD12-AS1 Gene

Drugs & Compounds for SAMD12-AS1 Gene

No Compound Related Data Available

Transcripts for SAMD12-AS1 Gene

mRNA/cDNA for SAMD12-AS1 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SAMD12-AS1 Gene

SAMD12 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SAMD12-AS1 Gene

No ASD Table

Relevant External Links for SAMD12-AS1 Gene

GeneLoc Exon Structure for
SAMD12-AS1
ECgene alternative splicing isoforms for
SAMD12-AS1

Expression for SAMD12-AS1 Gene

SOURCE GeneReport for Unigene cluster for SAMD12-AS1 Gene Hs.571527

No Expression Related Data Available

Primer Products

In Situ Assay Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SAMD12-AS1 Gene

Orthologs for SAMD12-AS1 Gene

Evolution for SAMD12-AS1 Gene

ENSEMBL:
Gene Tree for SAMD12-AS1 (if available)
TreeFam:
Gene Tree for SAMD12-AS1 (if available)

No data available for Orthologs for SAMD12-AS1 Gene

Paralogs for SAMD12-AS1 Gene

No data available for Paralogs for SAMD12-AS1 Gene

Variants for SAMD12-AS1 Gene

Sequence variations from dbSNP and Humsavar for SAMD12-AS1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs769322 -- 118,657,129(-) TTCTT(C/T)TTTAA intron-variant
rs769323 -- 118,657,065(-) ACCTT(-/T)AAGAT intron-variant
rs869164 -- 118,710,173(-) CCAGA(C/T)ATAAG intron-variant
rs952493 -- 118,688,913(-) TATAA(C/T)ATCAA intron-variant
rs952494 -- 118,688,650(-) GAATG(C/T)GGGAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SAMD12-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv891413 CNV Loss 21882294
nsv465786 CNV Loss 19166990
nsv465787 CNV Gain 19166990
nsv470231 CNV Gain 18288195
esv2651820 CNV Deletion 19546169
esv2657376 CNV Deletion 23128226
esv267536 CNV Insertion 20981092

Relevant External Links for SAMD12-AS1 Gene

HapMap Linkage Disequilibrium report
SAMD12-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SAMD12-AS1 Gene

Disorders for SAMD12-AS1 Gene

Relevant External Links for SAMD12-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SAMD12-AS1
genes like me logo Genes that share disorders with SAMD12-AS1: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SAMD12-AS1 Gene

Publications for SAMD12-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 67
  2. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E. … Simpson A.J.G. (Proc. Natl. Acad. Sci. U.S.A. 2000) 67

Products for SAMD12-AS1 Gene

Sources for SAMD12-AS1 Gene

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