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Aliases for SAMD12-AS1 Gene

Subcategory (RNA class) for SAMD12-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SAMD12-AS1 Gene

  • SAMD12 Antisense RNA 1 2 3 5
  • SAMD12 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 8 Open Reading Frame 26 2
  • Non-Protein Coding RNA 252 2
  • NCRNA00252 3
  • C8orf26 3

External Ids for SAMD12-AS1 Gene

Previous HGNC Symbols for SAMD12-AS1 Gene

  • C8orf26
  • NCRNA00252

Previous GeneCards Identifiers for SAMD12-AS1 Gene

  • GC08U901557
  • GC08P119635

Summaries for SAMD12-AS1 Gene

GeneCards Summary for SAMD12-AS1 Gene

SAMD12-AS1 (SAMD12 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SAMD12-AS1 Gene

Genomics for SAMD12-AS1 Gene

Regulatory Elements for SAMD12-AS1 Gene

Enhancers for SAMD12-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F118621 0.9 ENCODE 0.8 +0.6 570 2.3 HDGF PKNOX1 WRNIP1 ZNF76 SIN3A ZBTB40 ZNF143 CREM THAP11 HCFC1 SAMD12 SAMD12-AS1
GH08F118620 0.4 ENCODE 0.8 -0.7 -669 0.1 GATA3 ZBTB40 SAMD12-AS1 GC08M118561
GH08F118614 0.8 FANTOM5 ENCODE 0.4 -5.9 -5862 1.6 PKNOX1 SMARCA4 NFE2 NFE2L2 SAMD12 SAMD12-AS1 GC08M118561
GH08F118562 0.8 ENCODE 0.2 -56.1 -56112 3.8 PKNOX1 TBL1XR1 WRNIP1 MAX BMI1 EBF1 YY1 GATA3 CREM TCF7L2 SAMD12 GC08M118561 SAMD12-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SAMD12-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SAMD12-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001399863 799 2000 HDGF PKNOX1 WRNIP1 ZNF76 SIN3A ZBTB40 ZNF143 CREM THAP11 HCFC1

Genomic Location for SAMD12-AS1 Gene

Chromosome:
8
Start:
118,621,001 bp from pter
End:
118,858,218 bp from pter
Size:
237,218 bases
Orientation:
Plus strand

Genomic View for SAMD12-AS1 Gene

Genes around SAMD12-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SAMD12-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SAMD12-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SAMD12-AS1 Gene

Proteins for SAMD12-AS1 Gene

Post-translational modifications for SAMD12-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SAMD12-AS1 Gene

Domains & Families for SAMD12-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SAMD12-AS1 Gene

Function for SAMD12-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SAMD12-AS1 Gene

Localization for SAMD12-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SAMD12-AS1 Gene

Pathways & Interactions for SAMD12-AS1 Gene

SuperPathways for SAMD12-AS1 Gene

No Data Available

Interacting Proteins for SAMD12-AS1 Gene

Gene Ontology (GO) - Biological Process for SAMD12-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SAMD12-AS1 Gene

Transcripts for SAMD12-AS1 Gene

mRNA/cDNA for SAMD12-AS1 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SAMD12-AS1 Gene

SAMD12 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SAMD12-AS1 Gene

No ASD Table

Relevant External Links for SAMD12-AS1 Gene

GeneLoc Exon Structure for
SAMD12-AS1
ECgene alternative splicing isoforms for
SAMD12-AS1

Expression for SAMD12-AS1 Gene

SOURCE GeneReport for Unigene cluster for SAMD12-AS1 Gene:

Hs.571527
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SAMD12-AS1 Gene

Orthologs for SAMD12-AS1 Gene

Evolution for SAMD12-AS1 Gene

ENSEMBL:
Gene Tree for SAMD12-AS1 (if available)
TreeFam:
Gene Tree for SAMD12-AS1 (if available)

No data available for Orthologs for SAMD12-AS1 Gene

Paralogs for SAMD12-AS1 Gene

No data available for Paralogs for SAMD12-AS1 Gene

Variants for SAMD12-AS1 Gene

Sequence variations from dbSNP and Humsavar for SAMD12-AS1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1001899 -- 118,673,210(-) GTGAC(A/G)TCTGC intron-variant
rs10087471 -- 118,717,607(+) TAAAA(C/T)AACTG intron-variant
rs10088469 -- 118,690,250(+) CTCAG(C/T)TACTT intron-variant
rs10094969 -- 118,695,071(+) caaac(C/T)tttat intron-variant
rs10095603 -- 118,698,735(+) GTACC(C/T)ACACA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SAMD12-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv612050 CNV loss 21841781
nsv612049 CNV gain 21841781
nsv612048 CNV loss 21841781
nsv470231 CNV gain 18288195
nsv465787 CNV gain 19166990
nsv465786 CNV loss 19166990
esv3618578 CNV loss 21293372
esv3618576 CNV loss 21293372
esv3392527 CNV insertion 20981092
esv3303256 CNV mobile element insertion 20981092
esv2657376 CNV deletion 23128226
esv2651820 CNV deletion 19546169

Relevant External Links for SAMD12-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SAMD12-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SAMD12-AS1 Gene

Disorders for SAMD12-AS1 Gene

Relevant External Links for SAMD12-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SAMD12-AS1

No disorders were found for SAMD12-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SAMD12-AS1 Gene

Publications for SAMD12-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E. … Simpson A.J.G. (Proc. Natl. Acad. Sci. U.S.A. 2000) 3 64

Products for SAMD12-AS1 Gene

Sources for SAMD12-AS1 Gene

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