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Aliases for SAMD12-AS1 Gene

Subcategory (RNA class) for SAMD12-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SAMD12-AS1 Gene

  • SAMD12 Antisense RNA 1 2 3 5
  • SAMD12 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 8 Open Reading Frame 26 2
  • Non-Protein Coding RNA 252 2
  • NCRNA00252 3
  • C8orf26 3

External Ids for SAMD12-AS1 Gene

Previous HGNC Symbols for SAMD12-AS1 Gene

  • C8orf26
  • NCRNA00252

Previous GeneCards Identifiers for SAMD12-AS1 Gene

  • GC08U901557
  • GC08P119635

Summaries for SAMD12-AS1 Gene

GeneCards Summary for SAMD12-AS1 Gene

SAMD12-AS1 (SAMD12 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SAMD12-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SAMD12-AS1 Gene

Genomics for SAMD12-AS1 Gene

GeneHancer (GH) Regulatory Elements for SAMD12-AS1 Gene

Promoters and enhancers for SAMD12-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I118620 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 550.8 +0.6 569 2.3 HDGF PKNOX1 CLOCK ZNF76 SIN3A ZBTB40 ZNF335 ZNF143 ATF7 IKZF2 SAMD12 SAMD12-AS1
GH08I118621 Enhancer 0.4 ENCODE 550.8 -0.7 -669 0.1 GATA3 ZBTB40 SAMD12 SAMD12-AS1 GC08M118561
GH08I118614 Enhancer 0.6 FANTOM5 ENCODE 0.4 -5.9 -5862 1.6 PKNOX1 BACH1 NFE2 SAMD12 SAMD12-AS1 GC08M118561
GH08I118633 Enhancer 0.4 ENCODE 0.4 +14.2 14158 2.4 IKZF1 FOS SPI1 SAMD12 SAMD12-AS1 RPS26P35
GH08I118562 Enhancer 0.8 ENCODE 0.2 -56.1 -56111 3.8 PKNOX1 SMAD1 RB1 BACH1 PAX8 EBF1 BMI1 GATA3 POLR2A ATF7 GC08M118561 SAMD12 SAMD12-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SAMD12-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SAMD12-AS1 Gene

Genomic Locations for SAMD12-AS1 Gene
chr8:118,621,001-118,858,218
(GRCh38/hg38)
Size:
237,218 bases
Orientation:
Plus strand
chr8:119,633,240-119,738,306
(GRCh37/hg19)

Genomic View for SAMD12-AS1 Gene

Genes around SAMD12-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SAMD12-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SAMD12-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SAMD12-AS1 Gene

Proteins for SAMD12-AS1 Gene

Post-translational modifications for SAMD12-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SAMD12-AS1 Gene

Domains & Families for SAMD12-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SAMD12-AS1 Gene

Function for SAMD12-AS1 Gene

Phenotypes From GWAS Catalog for SAMD12-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SAMD12-AS1 Gene

Localization for SAMD12-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SAMD12-AS1 Gene

Pathways & Interactions for SAMD12-AS1 Gene

SuperPathways for SAMD12-AS1 Gene

No Data Available

Interacting Proteins for SAMD12-AS1 Gene

Gene Ontology (GO) - Biological Process for SAMD12-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SAMD12-AS1 Gene

Drugs & Compounds for SAMD12-AS1 Gene

No Compound Related Data Available

Transcripts for SAMD12-AS1 Gene

mRNA/cDNA for SAMD12-AS1 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SAMD12-AS1 Gene

SAMD12 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SAMD12-AS1 Gene

No ASD Table

Relevant External Links for SAMD12-AS1 Gene

GeneLoc Exon Structure for
SAMD12-AS1
ECgene alternative splicing isoforms for
SAMD12-AS1

Expression for SAMD12-AS1 Gene

SOURCE GeneReport for Unigene cluster for SAMD12-AS1 Gene:

Hs.571527
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SAMD12-AS1 Gene

Orthologs for SAMD12-AS1 Gene

Evolution for SAMD12-AS1 Gene

ENSEMBL:
Gene Tree for SAMD12-AS1 (if available)
TreeFam:
Gene Tree for SAMD12-AS1 (if available)

No data available for Orthologs for SAMD12-AS1 Gene

Paralogs for SAMD12-AS1 Gene

No data available for Paralogs for SAMD12-AS1 Gene

Variants for SAMD12-AS1 Gene

Sequence variations from dbSNP and Humsavar for SAMD12-AS1 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000022361 -- 118,632,334(+) C/A intron_variant
rs1000061440 -- 118,671,052(+) T/C intron_variant
rs1000077698 -- 118,717,918(+) G/A intron_variant
rs1000145535 -- 118,686,333(+) C/A/T intron_variant
rs1000165306 -- 118,638,014(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SAMD12-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2651820 CNV deletion 19546169
esv2657376 CNV deletion 23128226
esv3303256 CNV mobile element insertion 20981092
esv3392527 CNV insertion 20981092
esv3618576 CNV loss 21293372
esv3618578 CNV loss 21293372
nsv465786 CNV loss 19166990
nsv465787 CNV gain 19166990
nsv470231 CNV gain 18288195
nsv612048 CNV loss 21841781
nsv612049 CNV gain 21841781
nsv612050 CNV loss 21841781

Additional Variant Information for SAMD12-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SAMD12-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SAMD12-AS1 Gene

Disorders for SAMD12-AS1 Gene

Additional Disease Information for SAMD12-AS1

No disorders were found for SAMD12-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SAMD12-AS1 Gene

Publications for SAMD12-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 58

Products for SAMD12-AS1 Gene

Sources for SAMD12-AS1 Gene

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