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Aliases &
Descriptions
for SAMD12
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase)
About This Section
|
| Aliases |
|---|
| FLJ39458 1, 2 | | MGC148139 2 | | MGC148140 2 | | OTTHUMP00000066180 2 |
| | | Descriptions |
|---|
| sterile alpha motif domain containing 12 2 |
|
| |
Search outside databases for aliases for SAMD12 genePrevious GC identifer: GC08M119459 |
Summaries
for SAMD12(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| -- |
Genomic Location
for SAMD12
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences)
About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
 Transcription factor binding sites upstream to the SAMD12 gene 
Entrez Gene cytogenetic band: 8q24.12 Ensembl cytogenetic band: 8q24.12 HGNC cytogenetic band: 8q24.12SAMD12 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc gene densities for chromosome 8 GeneLoc Exon Structure GeneLoc location for GC08M119270:
(about GC identifiers)
Start:
|
119,270,875 bp from pter |
End:
|
119,703,365 bp from pter |
Size:
|
432,491 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000008.9 NT_008046.15
| Proteins
for SAMD12
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: SAM12_HUMAN, Q8N8I0 (See
protein sequence)Recommended Name: Sterile alpha motif domain-containing protein 12 Size: 201 amino acids; 22907 Da
Secondary accessions: Q0P502REFSEQ proteins (2 alternative transcripts):
NP_001095146.1 NP_997389.2
ENSEMBL proteins: ENSP00000367430 ENSP00000387133 ENSP00000314173
Human Recombinant Proteins  Browse Origene for full length recombinant human proteins expressed in human HEK293 cells
Antibodies for SAMD12:
Assays for SAMD12: | Protein
Domains/
Families
for SAMD12(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q8N8I0
ProtoNet protein and cluster: Q8N8I0 1 Blocks protein family: IPB001660 Sterile alpha motif SAM
UniProtKB/Swiss-Prot: SAM12_HUMAN, Q8N8I0Similarity: Contains 1 SAM (sterile alpha motif) domain | Gene Function
for SAMD12
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_207506
 Applied Biosystems Silencer® siRNAs for SAMD12
 Sigma-Aldrich siRNA for SAMD12
Sigma-Aldrich shRNA for SAMD12
Explore Sigma-Aldrich super-pooled esiRNAs
OriGene GFP tagged cDNA clones in CMV expression vector (see all 2): NM_001101676
Myc/DDK tagged cDNA clones in CMV expression vector (see all 2): NM_001101676
untagged cDNA clones in CMV expression vector (see all 2): NM_001101676
Primers:  Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
OriGene genome-wide validated SYBR primer pairs: NM_207506
| Pathways & Interactions
for SAMD12
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
-- |
Drugs & Compounds
for SAMD12(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
 Browse Tocris compounds for SAMD12
|
Transcripts
for SAMD12(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene,
Expression Assays from Applied Biosystems)
About This Section
| OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_207506
Sigma-Aldrich siRNA for SAMD12
Sigma-Aldrich shRNA for SAMD12
Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer® siRNAs: NM_001101676 NM_207506 REFSEQ mRNAs for SAMD12 gene (2 alternative transcripts): NM_001101676.1 NM_207506.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001101676 NM_207506
OriGene GFP tagged cDNA clones in CMV expression vector (see all 2): NM_001101676
Myc/DDK tagged cDNA clones in CMV expression vector (see all 2): NM_001101676
untagged cDNA clones in CMV expression vector (see all 2): NM_001101676
Additional cDNA sequence: EF212289.1 12 DOTS entries: DT.97822079 DT.99936242 DT.92024917 DT.206268 DT.75176359 DT.91647065 DT.206267 DT.91664629 DT.92005670 DT.97785533 DT.40201986 DT.99986063 8 AceView cDNA sequences:BF058494 BF516219 BM930432 BG387404 NM_207506 AK096777 BM728028 CD690574
 highest scoring ESTs for SAMD12:AK096777 BG387404 BM728028 BM930432 CD690574 NM_207506 BC121818 BC124554 BE161647 DA285945 Unigene Clusters for SAMD12: Sterile alpha motif domain containing 12 Hs.359393 [show with all ESTs], Hs.701196 [show with all ESTs]Unigene Representative Sequences: NM_001101676, AV724325
GeneLoc Exon Structure
3 Ensembl transcripts including schematic representations: ENST00000378188
ENST00000409003
ENST00000314727
|
Expression
for SAMD12
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| SAMD12 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for SAMD12
1 / 2 / 3 2 probe-sets matching SAMD12 gene Data from
(Publications) and GNF BioGPS
About these images
About these images
CGAP SAGE TAG: GCAATGTATT
SOURCE GeneReport for Unigene clusters: Hs.359393 Hs.701196
|
Orthologs
for SAMD12
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for SAMD12 gene from 5/7 species (see all 7
)
About this table Species with no ortholog for SAMD12
ENSEMBL Gene Tree for SAMD12 | Paralogs
for SAMD12(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section
| Paralogs for SAMD12 gene
- SAMD102
|
SNPs/Variants
for SAMD12(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for SAMD12 (up to first 250kb)
|
Disorders & Mutations
for SAMD12
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
| -- |
Medical News
for SAMD12(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications
for SAMD12 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 7 PubMed articles for SAMD12 gene: |
Search for SAMD12
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing SAMD12
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing SAMD12
(According to HUGE)
About This Section
| -- |
Specialized Databases showing SAMD12(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| About This Section
| --
| Services
for SAMD12(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section
| 
Products for SAMD12:
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