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Aliases for SAMD10 Gene

Aliases for SAMD10 Gene

  • Sterile Alpha Motif Domain Containing 10 2 3
  • SAM Domain-Containing Protein 10 3 4
  • C20orf136 3 4
  • Sterile Alpha Motif Domain-Containing Protein 10 3
  • Chromosome 20 Open Reading Frame 136 2
  • D930033N23Rik 3
  • DJ591C20.7 3
  • DJ591C20 3

External Ids for SAMD10 Gene

Previous Symbols for SAMD10 Gene

  • C20orf136

Summaries for SAMD10 Gene

GeneCards Summary for SAMD10 Gene

SAMD10 (Sterile Alpha Motif Domain Containing 10) is a Protein Coding gene. An important paralog of this gene is SAMD12.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SAMD10 Gene

Genomics for SAMD10 Gene

Genomic Location for SAMD10 Gene

Start:
63,974,113 bp from pter
End:
63,980,008 bp from pter
Size:
5,896 bases
Orientation:
Minus strand

Genomic View for SAMD10 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SAMD10 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SAMD10 Gene

Regulatory Elements for SAMD10 Gene

Proteins for SAMD10 Gene

  • Protein details for SAMD10 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BYL1-SAM10_HUMAN
    Recommended name:
    Sterile alpha motif domain-containing protein 10
    Protein Accession:
    Q9BYL1
    Secondary Accessions:

    Protein attributes for SAMD10 Gene

    Size:
    202 amino acids
    Molecular mass:
    22770 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SAMD10 Gene

Proteomics data for SAMD10 Gene at MOPED

Post-translational modifications for SAMD10 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SAMD10 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SAMD10 Gene

Domains for SAMD10 Gene

Gene Families for SAMD10 Gene

HGNC:
  • SAMD :Sterile alpha motif (SAM) domain containing

Protein Domains for SAMD10 Gene

UniProtKB/Swiss-Prot:

SAM10_HUMAN
Domain:
  • Contains 1 SAM (sterile alpha motif) domain.:
    • Q9BYL1
genes like me logo Genes that share domains with SAMD10: view

Function for SAMD10 Gene

Gene Ontology (GO) - Molecular Function for SAMD10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
GO:0043565 sequence-specific DNA binding --
genes like me logo Genes that share ontologies with SAMD10: view

miRNA for SAMD10 Gene

miRTarBase miRNAs that target SAMD10

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for SAMD10 Gene

Localization for SAMD10 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SAMD10 Gene COMPARTMENTS Subcellular localization image for SAMD10 gene
Compartment Confidence
nucleus 2
cytosol 1
extracellular 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for SAMD10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus --
genes like me logo Genes that share ontologies with SAMD10: view

Pathways for SAMD10 Gene

SuperPathways for SAMD10 Gene

No Data Available

Interacting Proteins for SAMD10 Gene

Gene Ontology (GO) - Biological Process for SAMD10 Gene

None

No data available for Pathways by source for SAMD10 Gene

Transcripts for SAMD10 Gene

Unigene Clusters for SAMD10 Gene

Sterile alpha motif domain containing 10:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SAMD10 Gene

No ASD Table

Relevant External Links for SAMD10 Gene

GeneLoc Exon Structure for
SAMD10
ECgene alternative splicing isoforms for
SAMD10

Expression for SAMD10 Gene

mRNA expression in normal human tissues for SAMD10 Gene

mRNA differential expression in normal tissues according to GTEx for SAMD10 Gene

This gene is overexpressed in Brain - Cerebellum (4.1).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for SAMD10 Gene

SOURCE GeneReport for Unigene cluster for SAMD10 Gene Hs.27189

genes like me logo Genes that share expressions with SAMD10: view

Orthologs for SAMD10 Gene

This gene was present in the common ancestor of animals.

Orthologs for SAMD10 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SAMD10 36
  • 99.83 (n)
  • 100 (a)
SAMD10 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SAMD10 36
  • 90.43 (n)
  • 92.08 (a)
SAMD10 37
  • 92 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SAMD10 36
  • 91.25 (n)
  • 95.05 (a)
SAMD10 37
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Samd10 36
  • 89.27 (n)
  • 92.08 (a)
Samd10 16
Samd10 37
  • 92 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SAMD10 37
  • 85 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SAMD10 37
  • 69 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Samd10 36
  • 89.6 (n)
  • 93.07 (a)
chicken
(Gallus gallus)
Aves SAMD10 36
  • 79.92 (n)
  • 79.53 (a)
SAMD10 37
  • 75 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SAMD10 37
  • 61 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.14313 36
zebrafish
(Danio rerio)
Actinopterygii samd10a 37
  • 51 (a)
OneToMany
samd10b 36
  • 70.76 (n)
  • 66.67 (a)
samd10b 37
  • 66 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta ave 37
  • 31 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 28 (a)
OneToMany
Species with no ortholog for SAMD10:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SAMD10 Gene

ENSEMBL:
Gene Tree for SAMD10 (if available)
TreeFam:
Gene Tree for SAMD10 (if available)

Paralogs for SAMD10 Gene

Paralogs for SAMD10 Gene

Selected SIMAP similar genes for SAMD10 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with SAMD10: view

Variants for SAMD10 Gene

Sequence variations from dbSNP and Humsavar for SAMD10 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
rs817339 -- 63,974,631(+) GCCCT(A/G)GGAAG utr-variant-3-prime
rs817340 -- 63,974,671(+) GAAAG(A/C)AGCAA utr-variant-3-prime
rs817341 -- 63,975,412(+) CATCC(C/T)GCAGG utr-variant-3-prime
rs817342 -- 63,975,620(+) CTCCT(A/G)AGGTC intron-variant
rs817343 -- 63,975,807(+) TTCTC(C/T)GCATT synonymous-codon, reference

Structural Variations from Database of Genomic Variants (DGV) for SAMD10 Gene

Variant ID Type Subtype PubMed ID
nsv913190 CNV Loss 21882294
nsv428381 CNV Gain+Loss 18775914
nsv509784 CNV Insertion 20534489
nsv913269 CNV Loss 21882294
nsv469773 CNV Gain 16826518
nsv913270 CNV Loss 21882294
dgv4653n71 CNV Loss 21882294
dgv4654n71 CNV Loss 21882294
dgv4656n71 CNV Loss 21882294
nsv913285 CNV Gain 21882294
nsv913287 CNV Loss 21882294
nsv913288 CNV Gain 21882294
nsv9830 CNV Gain 18304495
dgv4657n71 CNV Loss 21882294

Relevant External Links for SAMD10 Gene

HapMap Linkage Disequilibrium report
SAMD10

Disorders for SAMD10 Gene

No disorders were found for SAMD10 Gene.

No data available for UniProtKB/Swiss-Prot for SAMD10 Gene

Publications for SAMD10 Gene

  1. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3
  4. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. (PMID: 23535732) Eeles R.A. … Easton D.F. (Nat. Genet. 2013) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for SAMD10 Gene

Sources for SAMD10 Gene

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