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Aliases for SALRNA3 Gene

Subcategory (RNA class) for SALRNA3 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SALRNA3 Gene

  • Senescence Associated Long Non-Coding RNA 3 2 3 5
  • XLOC_025918 3
  • SAL-RNA3 3

External Ids for SALRNA3 Gene

Previous GeneCards Identifiers for SALRNA3 Gene

  • GC00U934351
  • GC15U901944

Summaries for SALRNA3 Gene

GeneCards Summary for SALRNA3 Gene

SALRNA3 (Senescence Associated Long Non-Coding RNA 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SALRNA3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SALRNA3 Gene

Genomics for SALRNA3 Gene

Regulatory Elements for SALRNA3 Gene

Enhancers for SALRNA3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15H070617 1 ENCODE 0.7 +2.2 2167 1 FOXA2 ATF1 MLX ARID4B FEZF1 TCF12 ZNF207 ATF7 SP5 ZHX2 SALRNA3 SALRNA2
GH15H070604 0.8 Ensembl ENCODE 0.4 -10.0 -10031 1 CTCF ZNF692 GLIS1 ETV4 RAD21 MIR629 UACA ENSG00000259227 SALRNA3
GH15H070632 0.7 ENCODE 0.4 +17.7 17678 2 SOX5 SOX13 L3MBTL2 ZNF621 ZIC2 ZKSCAN1 POLR2A CREB1 ZNF207 FOS HMGB1P6 ENSG00000259744 UACA MIR629 SALRNA2 SALRNA3
GH15H070628 0.5 ENCODE 0.4 +12.7 12650 0 ZNF341 ZBTB11 CEBPB ZNF488 ZIC2 SALRNA2 SALRNA3
GH15H070607 0.4 ENCODE 0.4 -7.5 -7534 1 ATF2 ENSG00000259227 SALRNA3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SALRNA3 on UCSC Golden Path with GeneCards custom track

Genomic Location for SALRNA3 Gene

Chromosome:
15
Start:
70,615,547 bp from pter
End:
70,616,567 bp from pter
Size:
1,021 bases
Orientation:
Plus strand

Genomic View for SALRNA3 Gene

Genes around SALRNA3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SALRNA3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SALRNA3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SALRNA3 Gene

Proteins for SALRNA3 Gene

Post-translational modifications for SALRNA3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SALRNA3 Gene

Domains & Families for SALRNA3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SALRNA3 Gene

Function for SALRNA3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SALRNA3 Gene

Localization for SALRNA3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SALRNA3 Gene

Pathways & Interactions for SALRNA3 Gene

SuperPathways for SALRNA3 Gene

No Data Available

Interacting Proteins for SALRNA3 Gene

Gene Ontology (GO) - Biological Process for SALRNA3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SALRNA3 Gene

Drugs & Compounds for SALRNA3 Gene

No Compound Related Data Available

Transcripts for SALRNA3 Gene

mRNA/cDNA for SALRNA3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SALRNA3 Gene

No ASD Table

Relevant External Links for SALRNA3 Gene

GeneLoc Exon Structure for
SALRNA3
ECgene alternative splicing isoforms for
SALRNA3

Expression for SALRNA3 Gene

NURSA nuclear receptor signaling pathways regulating expression of SALRNA3 Gene:

SALRNA3
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SALRNA3 Gene

Orthologs for SALRNA3 Gene

Evolution for SALRNA3 Gene

ENSEMBL:
Gene Tree for SALRNA3 (if available)
TreeFam:
Gene Tree for SALRNA3 (if available)

No data available for Orthologs for SALRNA3 Gene

Paralogs for SALRNA3 Gene

No data available for Paralogs for SALRNA3 Gene

Variants for SALRNA3 Gene

Sequence variations from dbSNP and Humsavar for SALRNA3 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1001302493 -- 70,615,658(+) GGAAA(A/G)GGCTG nc-transcript-variant
rs1001849485 -- 70,615,286(+) GACAC(A/G)AAATT upstream-variant-2KB
rs1002150731 -- 70,615,594(+) TGTTA(A/T)CATGC nc-transcript-variant
rs1003515810 -- 70,616,573(+) CCTCC(C/T)ACCAG downstream-variant-500B
rs1003820347 -- 70,616,930(+) TTCCA(C/T)GTAAT downstream-variant-500B

Relevant External Links for SALRNA3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SALRNA3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SALRNA3 Gene

Disorders for SALRNA3 Gene

Relevant External Links for SALRNA3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SALRNA3

No disorders were found for SALRNA3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SALRNA3 Gene

Publications for SALRNA3 Gene

  1. Senescence-associated lncRNAs: senescence-associated long noncoding RNAs. (PMID: 23758631) Abdelmohsen K … Gorospe M (Aging cell 2013) 2 3 60

Products for SALRNA3 Gene

Sources for SALRNA3 Gene

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