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Aliases for SALRNA2 Gene

Subcategory (RNA class) for SALRNA2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SALRNA2 Gene

  • Senescence Associated Long Non-Coding RNA 2 2 3 5
  • XLOC_025931 3
  • SAL-RNA2 3

External Ids for SALRNA2 Gene

Previous GeneCards Identifiers for SALRNA2 Gene

  • GC00U934230
  • GC15U901849

Summaries for SALRNA2 Gene

GeneCards Summary for SALRNA2 Gene

SALRNA2 (Senescence Associated Long Non-Coding RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SALRNA2 Gene

Genomics for SALRNA2 Gene

Regulatory Elements for SALRNA2 Gene

Enhancers for SALRNA2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F070631 1.2 Ensembl ENCODE 0.8 -2.3 -2330 2.6 SOX13 SOX5 PKNOX1 ZNF207 FOS ZIC2 ZKSCAN1 UACA MIR629 SALRNA2 SALRNA3
GH15F070636 0.2 Ensembl 0.8 +1.5 1452 0.2 CTCF MAX MYC MIR629 SALRNA2 GC15P070655
GH15F070628 0.7 Ensembl ENCODE 0.4 -6.8 -6849 0.8 TBP TAL1 MAX UBTF ZIC2 FOXK2 GATA2 NCOR1 TRIM24 L3MBTL2 SALRNA2 SALRNA3
GH15F070643 0.7 ENCODE 0.4 +8.7 8688 0.2 ELF3 SOX5 TEAD1 FEZF1 NR2F2 RARA OSR2 ZFP69B ETV4 ZNF600 SALRNA2 GC15P070655
GH15F070625 0.2 Ensembl 0.4 -9.7 -9749 0.2 ZNF680 ZBTB11 SPI1 SALRNA2 SALRNA3
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SALRNA2 on UCSC Golden Path with GeneCards custom track

Genomic Location for SALRNA2 Gene

Chromosome:
15
Start:
70,635,249 bp from pter
End:
70,637,314 bp from pter
Size:
2,066 bases
Orientation:
Plus strand

Genomic View for SALRNA2 Gene

Genes around SALRNA2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SALRNA2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SALRNA2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SALRNA2 Gene

Proteins for SALRNA2 Gene

Post-translational modifications for SALRNA2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SALRNA2 Gene

Domains & Families for SALRNA2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SALRNA2 Gene

Function for SALRNA2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SALRNA2 Gene

Localization for SALRNA2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SALRNA2 Gene

Pathways & Interactions for SALRNA2 Gene

SuperPathways for SALRNA2 Gene

No Data Available

Interacting Proteins for SALRNA2 Gene

Gene Ontology (GO) - Biological Process for SALRNA2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SALRNA2 Gene

Transcripts for SALRNA2 Gene

mRNA/cDNA for SALRNA2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SALRNA2 Gene

No ASD Table

Relevant External Links for SALRNA2 Gene

GeneLoc Exon Structure for
SALRNA2
ECgene alternative splicing isoforms for
SALRNA2

Expression for SALRNA2 Gene

NURSA nuclear receptor signaling pathways regulating expression of SALRNA2 Gene:

SALRNA2
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SALRNA2 Gene

Orthologs for SALRNA2 Gene

Evolution for SALRNA2 Gene

ENSEMBL:
Gene Tree for SALRNA2 (if available)
TreeFam:
Gene Tree for SALRNA2 (if available)

No data available for Orthologs for SALRNA2 Gene

Paralogs for SALRNA2 Gene

No data available for Paralogs for SALRNA2 Gene

Variants for SALRNA2 Gene

Sequence variations from dbSNP and Humsavar for SALRNA2 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs10851832 -- 70,633,670(+) GGCTG(C/G)AGGCT upstream-variant-2KB
rs112002360 -- 70,637,571(+) ACCTT(C/T)GTGTA downstream-variant-500B
rs112096860 -- 70,633,759(+) AACCA(A/G)CGGGT upstream-variant-2KB
rs113083746 -- 70,633,760(+) ACCAG(A/C)GGGTC upstream-variant-2KB
rs114689441 -- 70,633,287(+) AATGC(A/G)CTGCA upstream-variant-2KB

Relevant External Links for SALRNA2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SALRNA2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SALRNA2 Gene

Disorders for SALRNA2 Gene

Relevant External Links for SALRNA2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SALRNA2

No disorders were found for SALRNA2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SALRNA2 Gene

Publications for SALRNA2 Gene

  1. Senescence-associated lncRNAs: senescence-associated long noncoding RNAs. (PMID: 23758631) Abdelmohsen K. … Gorospe M. (Aging Cell 2013) 2 3 64

Products for SALRNA2 Gene

Sources for SALRNA2 Gene

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