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Aliases for SALRNA2 Gene

Subcategory (RNA class) for SALRNA2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SALRNA2 Gene

  • Senescence Associated Long Non-Coding RNA 2 2 3 5
  • XLOC_025931 3
  • SAL-RNA2 3

External Ids for SALRNA2 Gene

Previous GeneCards Identifiers for SALRNA2 Gene

  • GC00U934230
  • GC15U901849

Summaries for SALRNA2 Gene

GeneCards Summary for SALRNA2 Gene

SALRNA2 (Senescence Associated Long Non-Coding RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SALRNA2 Gene

Genomics for SALRNA2 Gene

Regulatory Elements for SALRNA2 Gene

Enhancers for SALRNA2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15G070632 0.7 ENCODE 0.7 -2.0 -2025 2.0 SOX5 SOX13 PKNOX1 L3MBTL2 ZNF621 ZIC2 ZKSCAN1 CREB1 ZNF207 FOS HMGB1P6 ENSG00000259744 UACA MIR629 SALRNA2 SALRNA3
GH15G070617 1 ENCODE 0.4 -17.5 -17536 1.3 FOXA2 ATF1 MLX ARID4B FEZF1 ZNF48 TCF12 ZNF207 SP5 ZHX2 SALRNA3 SALRNA2
GH15G070643 0.7 ENCODE 0.4 +8.7 8688 0.2 ELF3 FEZF1 RARA ZNF600 HOMEZ SOX5 TEAD1 ZNF394 NR2F2 ZSCAN21 SALRNA2 GC15P070655
GH15G070628 0.6 ENCODE 0.4 -7.1 -7053 0.2 ZNF341 ZBTB11 CEBPB ZNF488 REST ZIC2 SALRNA2 SALRNA3
GH15G070653 0.5 ENCODE 0.4 +18.6 18616 1.1 ZSCAN4 ZNF384 FOXA1 GC15P070655 SALRNA2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SALRNA2 on UCSC Golden Path with GeneCards custom track

Genomic Location for SALRNA2 Gene

Chromosome:
15
Start:
70,635,249 bp from pter
End:
70,637,314 bp from pter
Size:
2,066 bases
Orientation:
Plus strand

Genomic View for SALRNA2 Gene

Genes around SALRNA2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SALRNA2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SALRNA2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SALRNA2 Gene

Proteins for SALRNA2 Gene

Post-translational modifications for SALRNA2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SALRNA2 Gene

Domains & Families for SALRNA2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SALRNA2 Gene

Function for SALRNA2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SALRNA2 Gene

Localization for SALRNA2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SALRNA2 Gene

Pathways & Interactions for SALRNA2 Gene

SuperPathways for SALRNA2 Gene

No Data Available

Interacting Proteins for SALRNA2 Gene

Gene Ontology (GO) - Biological Process for SALRNA2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SALRNA2 Gene

Drugs & Compounds for SALRNA2 Gene

No Compound Related Data Available

Transcripts for SALRNA2 Gene

mRNA/cDNA for SALRNA2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SALRNA2 Gene

No ASD Table

Relevant External Links for SALRNA2 Gene

GeneLoc Exon Structure for
SALRNA2
ECgene alternative splicing isoforms for
SALRNA2

Expression for SALRNA2 Gene

NURSA nuclear receptor signaling pathways regulating expression of SALRNA2 Gene:

SALRNA2
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SALRNA2 Gene

Orthologs for SALRNA2 Gene

Evolution for SALRNA2 Gene

ENSEMBL:
Gene Tree for SALRNA2 (if available)
TreeFam:
Gene Tree for SALRNA2 (if available)

No data available for Orthologs for SALRNA2 Gene

Paralogs for SALRNA2 Gene

No data available for Paralogs for SALRNA2 Gene

Variants for SALRNA2 Gene

Sequence variations from dbSNP and Humsavar for SALRNA2 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1000768598 -- 70,637,397(+) TCCCA(A/G)CTACT downstream-variant-500B
rs1001137210 -- 70,637,675(+) AAACG(C/G)ACTGG downstream-variant-500B
rs1001599892 -- 70,633,997(+) ACCCC(C/G)CTCAA upstream-variant-2KB
rs1002385079 -- 70,636,553(+) CAAAT(G/T)AAAAA nc-transcript-variant
rs1003340966 -- 70,633,538(+) CCCAG(C/T)AGGCT upstream-variant-2KB

Relevant External Links for SALRNA2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SALRNA2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SALRNA2 Gene

Disorders for SALRNA2 Gene

Relevant External Links for SALRNA2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SALRNA2

No disorders were found for SALRNA2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SALRNA2 Gene

Publications for SALRNA2 Gene

  1. Senescence-associated lncRNAs: senescence-associated long noncoding RNAs. (PMID: 23758631) Abdelmohsen K. … Gorospe M. (Aging Cell 2013) 2 3 64

Products for SALRNA2 Gene

Sources for SALRNA2 Gene

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