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Aliases for SALRNA1 Gene

Subcategory (RNA class) for SALRNA1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SALRNA1 Gene

  • Senescence Associated Long Non-Coding RNA 1 2 3 5
  • XLOC_023166 3
  • SAL-RNA1 3

External Ids for SALRNA1 Gene

Previous GeneCards Identifiers for SALRNA1 Gene

  • GC00U934340
  • GC14U901754

Summaries for SALRNA1 Gene

GeneCards Summary for SALRNA1 Gene

SALRNA1 (Senescence Associated Long Non-Coding RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SALRNA1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SALRNA1 Gene

Genomics for SALRNA1 Gene

Regulatory Elements for SALRNA1 Gene

Enhancers for SALRNA1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14H061376 1.9 FANTOM5 Ensembl ENCODE dbSUPER 5.8 +746.0 745955 17 HDGF PKNOX1 FEZF1 YBX1 ZNF2 TCF12 ZNF121 ZNF207 FOS ATF7 PRKCH TMEM30B SALRNA1 LOC105370525 ENSG00000247287 GC14M061347
GH14H060636 1 Ensembl ENCODE dbSUPER 0.7 -1.2 -1248 2 ZNF202 SUZ12 EZH2 C14orf39 TRMT5 SIX1 SIX4 TMEM30B SALRNA1 RPS15AP4
GH14H060624 1.1 Ensembl ENCODE 0.4 -14.0 -14009 1 ELF3 SOX13 CTCF PKNOX1 FOXA2 SAP130 JUN ARID4B THRB RAD21 C14orf39 SIX4 SALRNA1 RPS15AP4
GH14H060632 0.6 dbSUPER 0.4 -6.2 -6239 0 FEZF1 OSR2 PRDM6 POLR2A PRDM10 PRDM4 RUNX3 TRIM28 ZXDB SIX1 TMEM30B SIX4 SALRNA1 RPS15AP4
GH14H060616 0.8 ENCODE 0.3 -22.2 -22211 1 SOX13 FOXA2 MLX FEZF1 RARA ZFHX2 CTBP1 GATA3 ZNF207 PRDM10 C14orf39 RPS15AP4 SALRNA1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SALRNA1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SALRNA1 Gene

Chromosome:
14
Start:
60,639,216 bp from pter
End:
60,642,589 bp from pter
Size:
3,374 bases
Orientation:
Plus strand

Genomic View for SALRNA1 Gene

Genes around SALRNA1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SALRNA1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SALRNA1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SALRNA1 Gene

Proteins for SALRNA1 Gene

Post-translational modifications for SALRNA1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SALRNA1 Gene

Domains & Families for SALRNA1 Gene

Gene Families for SALRNA1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SALRNA1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SALRNA1 Gene

Function for SALRNA1 Gene

Phenotypes From GWAS Catalog for SALRNA1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SALRNA1 Gene

Localization for SALRNA1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SALRNA1 Gene

Pathways & Interactions for SALRNA1 Gene

SuperPathways for SALRNA1 Gene

No Data Available

Interacting Proteins for SALRNA1 Gene

Gene Ontology (GO) - Biological Process for SALRNA1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SALRNA1 Gene

Drugs & Compounds for SALRNA1 Gene

No Compound Related Data Available

Transcripts for SALRNA1 Gene

mRNA/cDNA for SALRNA1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SALRNA1 Gene

No ASD Table

Relevant External Links for SALRNA1 Gene

GeneLoc Exon Structure for
SALRNA1
ECgene alternative splicing isoforms for
SALRNA1

Expression for SALRNA1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SALRNA1 Gene:

SALRNA1
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SALRNA1 Gene

Orthologs for SALRNA1 Gene

Evolution for SALRNA1 Gene

ENSEMBL:
Gene Tree for SALRNA1 (if available)
TreeFam:
Gene Tree for SALRNA1 (if available)

No data available for Orthologs for SALRNA1 Gene

Paralogs for SALRNA1 Gene

No data available for Paralogs for SALRNA1 Gene

Variants for SALRNA1 Gene

Sequence variations from dbSNP and Humsavar for SALRNA1 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs1002850553 -- 60,637,539(+) CCGGA(C/G)CCCTG intron-variant, upstream-variant-2KB
rs1003154353 -- 60,639,540(+) AGGAA(C/G)CATGT intron-variant, nc-transcript-variant
rs1003722892 -- 60,639,788(+) CTTTT(C/G)TAAAG intron-variant, nc-transcript-variant
rs1004078710 -- 60,637,920(+) CCCGG(A/G)GGGGG intron-variant, upstream-variant-2KB
rs1006103676 -- 60,640,525(+) GAAAC(-/TT)AAAGT intron-variant, downstream-variant-500B

Relevant External Links for SALRNA1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SALRNA1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SALRNA1 Gene

Disorders for SALRNA1 Gene

Relevant External Links for SALRNA1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SALRNA1

No disorders were found for SALRNA1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SALRNA1 Gene

Publications for SALRNA1 Gene

  1. Senescence-associated lncRNAs: senescence-associated long noncoding RNAs. (PMID: 23758631) Abdelmohsen K … Gorospe M (Aging cell 2013) 2 3 60

Products for SALRNA1 Gene

Sources for SALRNA1 Gene

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