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Aliases & Descriptions for SALL3
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| ZNF796 1, 2 | | hSALL3 3 |
| | | Descriptions |
|---|
| C2H2 zinc finger protein SALL3 2 | | Zinc finger protein SALL3 3 | | sal (Drosophila)-like 3 1 | | sal-like 3 2 | | sal-like 3 (Drosophila) 2 | | spalt-like zinc finger protein 2 |
|
| | Search outside databases for aliases for SALL3 genePrevious GC identifers: GC18U990052 GC18P076766 GC18P076475 GC18P074839 |
Summaries for SALL3(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| UniProtKB/Swiss-Prot: SALL3_HUMAN, Q9BXA9Function: Probable transcription factor |
Genomic Location for SALL3
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the SALL3 gene 
Entrez Gene cytogenetic band: 18q23 Ensembl cytogenetic band: 18q23 HGNC cytogenetic band: 18q23SALL3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 18 GeneLoc Exon Structure GeneLoc location for GC18P074841:
(about GC identifiers)
Start:
|
74,841,263 bp from pter |
End:
|
74,859,182 bp from pter |
Size:
|
17,920 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000018.8 NT_010879.15
| Proteins for SALL3
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: SALL3_HUMAN, Q9BXA9 (See
protein sequence)Recommended Name: Sal-like protein 3 Size: 1300 amino acids; 135372 Da
Subcellular location: Nucleus (Probable)
Developmental stage: In fetal brain of the 24th gestational week
Secondary accessions: Q9UGH1Alternative splicing: 4 isoforms: Q9BXA9-1 Q9BXA9-2 Q9BXA9-3 Q9BXA9-4 Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_741996.2
ENSEMBL proteins: ENSP00000299466 ENSP00000340501
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for SALL3: Assays for SALL3: | Protein
Domains/ Families for SALL3(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q9BXA9
ProtoNet protein and cluster: Q9BXA9 UniProtKB/Swiss-Prot: SALL3_HUMAN, Q9BXA9Similarity: Belongs to the sal C2H2-type zinc-finger protein familySimilarity: Contains 9 C2H2-type zinc fingers | Gene Function for SALL3
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_171999
Applied Biosystems Silencer® siRNAs for SALL3
Sigma-Aldrich siRNA for SALL3  Sigma-Aldrich shRNA for SALL3  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_171999                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_171999                                  untagged cDNA clone in CMV expression vector: NM_171999 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_171999
UniProtKB/Swiss-Prot: SALL3_HUMAN, Q9BXA9Function: Probable transcription factorGenatlas biochemistry entry for SALL3:spalt (sal)-like,Drosophila SAL like gene 3,expressed in fetal brain and in several adult tissues,haploinsufficency in the 18q deletion syndrome and may be contributing to the phenotype8 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Sall3):
3 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for SALL3
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5 Interacting proteins for SALL3 (ENSP000002994663) via UniProtKB, MINT, and/or STRINGAbout this table
2 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006350 | transcription |
IEA | -- | | GO:0006355 | regulation of transcription, DNA-dependent |
IEA | -- | About this table
|
Drugs & Compounds for SALL3(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for SALL3
|
Transcripts for SALL3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_171999
Sigma-Aldrich siRNA for SALL3  Sigma-Aldrich shRNA for SALL3  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_171999 REFSEQ mRNAs for SALL3 gene: NM_171999.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_171999               OriGene GFP tagged cDNA clone in CMV expression vector: NM_171999                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_171999                                  untagged cDNA clone in CMV expression vector: NM_171999  Additional cDNA sequence: BC148296.2 5 DOTS entries: DT.436404 DT.436647 DT.121091407 DT.70104457 DT.95290774 24/26 AceView cDNA sequences (see all 26
):AI634411 AA649850 AI871434 AI656975 AI480087 AI637836 BF432623 NM_171999 BF739956 AW450071 AW137217 BE501147 BE220771 R42871 T07317 AI668981 AI475090 AW027492 AA429109 AI015631 AI949558 R37086 R21486 H92108
highest scoring ESTs for SALL3:AI055828 AI564778 AI566552 AI869498 AI871129 AW269333 BE222946 H23192 Z40278 AI480087 Unigene Cluster for SALL3: Sal-like 3 (Drosophila) Hs.700557 [show with all ESTs]Unigene Representative Sequence: NM_171999
GeneLoc Exon Structure
2 Ensembl transcripts including schematic representations: ENST00000299466
ENST00000339709
|
Expression for SALL3
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| SALL3 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for SALL3
1 / 2 / 3 5 probe-sets matching SALL3 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: CTTTTCGTGT
SOURCE GeneReport for Unigene cluster: Hs.700557 UniProtKB/Swiss-Prot: SALL3_HUMAN, Q9BXA9Tissue specificity: Widely expressed in adult with highest levels in heart. Expressed in fetal brain (in neurons of hippocampus, cortex, mediodorsal and ventrolateral thalamic nuclei, putamen, cerebellum and brainstem) |
Orthologs for SALL3
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for SALL3 gene from 5/7 species (see all 7
)
About this table Species with no ortholog for SALL3
ENSEMBL Gene Tree for SALL3 | Paralogs for SALL3(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for SALL3 gene
- SALL42 SALL12
|
SNPs/Variants for SALL3(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for SALL3 (up to first 250kb)
|
Disorders & Mutations for SALL3
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 605079
|
Medical News for SALL3(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for SALL3 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 7 PubMed articles for SALL3 gene: |
Search for SALL3
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing SALL3
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing SALL3
(According to HUGE)
About This Section
| -- |
Specialized Databases showing SALL3(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for SALL3(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for SALL3:

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Incremental update: 13 Oct 2009
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