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Aliases for SAGE1 Gene

Aliases for SAGE1 Gene

  • Sarcoma Antigen 1 2 3
  • Cancer/Testis Antigen 14 2 3 4
  • SAGE 3 4 6
  • CT14 3 4
  • Putative Tumor Antigen 3

External Ids for SAGE1 Gene

Previous GeneCards Identifiers for SAGE1 Gene

  • GC0XP133682
  • GC0XP134701
  • GC0XP134803
  • GC0XP134971
  • GC0XP124250

Summaries for SAGE1 Gene

Entrez Gene Summary for SAGE1 Gene

  • This gene belongs to a class of genes that are activated in tumors. These genes are expressed in tumors of different histologic types but not in normal tissues, except for spermatogenic cells and, for some, placenta. The proteins encoded by these genes appear to be strictly tumor specific, and hence may be excellent sources of antigens for cancer immunotherapy. This gene is expressed in sarcomas. [provided by RefSeq, Jul 2008]

GeneCards Summary for SAGE1 Gene

SAGE1 (Sarcoma Antigen 1) is a Protein Coding gene. Diseases associated with SAGE1 include retroperitoneal fibrosis and ductal carcinoma in situ. An important paralog of this gene is DDX26B.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SAGE1 Gene

Genomics for SAGE1 Gene

Regulatory Elements for SAGE1 Gene

Genomic Location for SAGE1 Gene

Start:
135,889,205 bp from pter
End:
135,913,061 bp from pter
Size:
23,857 bases
Orientation:
Plus strand

Genomic View for SAGE1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SAGE1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SAGE1 Gene

Proteins for SAGE1 Gene

  • Protein details for SAGE1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NXZ1-SAGE1_HUMAN
    Recommended name:
    Sarcoma antigen 1
    Protein Accession:
    Q9NXZ1
    Secondary Accessions:
    • Q5JNW0

    Protein attributes for SAGE1 Gene

    Size:
    904 amino acids
    Molecular mass:
    99225 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SAGE1 Gene

Proteomics data for SAGE1 Gene at MOPED

Post-translational modifications for SAGE1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SAGE1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SAGE1 Gene

Domains for SAGE1 Gene

Protein Domains for SAGE1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for SAGE1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SAGE1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for SAGE1 Gene

Function for SAGE1 Gene

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SAGE1

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SAGE1 Gene

Localization for SAGE1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SAGE1 Gene COMPARTMENTS Subcellular localization image for SAGE1 gene
Compartment Confidence
nucleus 4
cytosol 2

Gene Ontology (GO) - Cellular Components for SAGE1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA --
GO:0005654 nucleoplasm IDA --
genes like me logo Genes that share ontologies with SAGE1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for SAGE1 Gene

Pathways for SAGE1 Gene

SuperPathways for SAGE1 Gene

No Data Available

Interacting Proteins for SAGE1 Gene

Gene Ontology (GO) - Biological Process for SAGE1 Gene

None

No data available for Pathways by source for SAGE1 Gene

Compounds for SAGE1 Gene

(1) Novoseek inferred chemical compound relationships for SAGE1 Gene

Compound -log(P) Hits PubMed IDs
oligonucleotide 23.7 4
genes like me logo Genes that share compounds with SAGE1: view

Transcripts for SAGE1 Gene

mRNA/cDNA for SAGE1 Gene

(8) REFSEQ mRNAs :
(8) Selected AceView cDNA sequences:
(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SAGE1 Gene

Sarcoma antigen 1:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SAGE1

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SAGE1 Gene

ExUns: 1a · 1b · 1c · 1d · 1e · 1f ^ 2 ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^
SP1: - - -
SP2: - -
SP3: - - -
SP4: -

ExUns: 20 ^ 21
SP1:
SP2:
SP3:
SP4:

Relevant External Links for SAGE1 Gene

GeneLoc Exon Structure for
SAGE1
ECgene alternative splicing isoforms for
SAGE1

Expression for SAGE1 Gene

mRNA expression in normal human tissues for SAGE1 Gene

mRNA differential expression in normal tissues according to GTEx for SAGE1 Gene

This gene is overexpressed in Testis (32.9).

Protein differential expression in normal tissues for SAGE1 Gene

This gene is overexpressed in Lung (67.5).

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for SAGE1 Gene

SOURCE GeneReport for Unigene cluster for SAGE1 Gene Hs.195292

mRNA Expression by UniProt/SwissProt for SAGE1 Gene

Q9NXZ1-SAGE1_HUMAN
Tissue specificity: Expressed mainly in bladder, lung, head and neck carcinomas. Not expressed in normal tissues except for testis.
genes like me logo Genes that share expressions with SAGE1: view

Expression partners for SAGE1 Gene

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for SAGE1 Gene

Orthologs for SAGE1 Gene

This gene was present in the common ancestor of animals.

Orthologs for SAGE1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SAGE1 35
  • 99.26 (n)
  • 98.34 (a)
-- 36
  • 98 (a)
OneToMany
-- 36
  • 98 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 13 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 17 (a)
OneToMany
chicken
(Gallus gallus)
Aves -- 36
  • 16 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 15 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii ddx26b 36
  • 14 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta IntS6 36
  • 7 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea dic-1 36
  • 10 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 11 (a)
OneToMany
Species with no ortholog for SAGE1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for SAGE1 Gene

ENSEMBL:
Gene Tree for SAGE1 (if available)
TreeFam:
Gene Tree for SAGE1 (if available)

Paralogs for SAGE1 Gene

Paralogs for SAGE1 Gene

Selected SIMAP similar genes for SAGE1 Gene using alignment to 3 proteins:

Pseudogenes.org Pseudogenes for SAGE1 Gene

genes like me logo Genes that share paralogs with SAGE1: view

Variants for SAGE1 Gene

Sequence variations from dbSNP and Humsavar for SAGE1 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs4130256 -- 135,895,529(+) CCCTG(G/T)ATGAT intron-variant
rs4829584 -- 135,911,895(+) GCAAA(A/G)AAAAT synonymous-codon, reference
rs4829797 -- 135,898,801(+) gagac(C/G)tgtct intron-variant
rs4829798 -- 135,911,430(+) TACTC(A/G)AACTT intron-variant
rs4829799 - 135,911,846(+) GTCTT(C/T)GGTGG missense, reference

Structural Variations from Database of Genomic Variants (DGV) for SAGE1 Gene

Variant ID Type Subtype PubMed ID
dgv2477e1 CNV Complex 17122850
esv785 CNV CNV 17122850
esv2740498 CNV Deletion 23290073
nsv527747 CNV Gain 19592680
nsv7460 OTHER Inversion 18451855
esv1010013 CNV Gain 20482838
dgv2480e1 CNV Complex 17122850
essv24688 CNV CNV 17122850
nsv469568 CNV Gain 16826518
nsv471605 CNV Gain+Loss 15918152
nsv7107 CNV Loss 18451855
nsv527358 CNV Gain 19592680

Relevant External Links for SAGE1 Gene

HapMap Linkage Disequilibrium report
SAGE1
Locus Specific Mutation Databases (LSDB)
SAGE1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SAGE1 Gene

Disorders for SAGE1 Gene

MalaCards: The human disease database

MalaCards: The human disease database.

Search for SAGE1 Gene in MalaCards »

(4) Diseases for SAGE1 Gene including...

(1) University of Copenhagen DISEASES for SAGE1 Gene

(6) Novoseek inferred disease relationships for SAGE1 Gene

Disease -log(P) Hits PubMed IDs
tumors 25.6 15
lung carcinoma 19 2
cancer 15.2 10
glioma 13.4 2
leukemia 0 1
genes like me logo Genes that share disorders with SAGE1: view

No data available for OMIM , UniProtKB/Swiss-Prot , Genatlas and External Links for SAGE1 Gene

Publications for SAGE1 Gene

  1. Identification on a human sarcoma of two new genes with tumor- specific expression. (PMID: 10919659) Martelange V.M.F. … Boon T. (Cancer Res. 2000) 2 3 4 23
  2. Determination of cellularly processed HLA-A2402-restricted novel CTL epitopes derived from two cancer germ line genes, MAGE-A4 and SAGE. (PMID: 16061876) Miyahara Y. … Shiku H. (Clin. Cancer Res. 2005) 3 23
  3. Assessment and integration of publicly available SAGE, cDNA microarray, and oligonucleotide microarray expression data for global coexpression analyses. (PMID: 16098712) Griffith O.L. … Jones S.J. (Genomics 2005) 23
  4. Software for quantitative trait analysis. (PMID: 16197737) Almasy L. … Warren D.M. (Hum. Genomics 2005) 23
  5. A comparative analysis by SAGE of gene expression profiles of Barrett's esophagus, normal squamous esophagus, and gastric cardia. (PMID: 16230080) van Baal J.W. … Krishnadath K.K. (Gastroenterology 2005) 23

Products for SAGE1 Gene

Sources for SAGE1 Gene

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