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SAGE1 Gene

protein-coding GIFtS: 46

GC0XP134803

sarcoma antigen 1
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
About This Section

Aliases
CT14 ^¹, ², ³
OTTHUMP00000024088 ^²
SAGE ^¹, ², ³

Descriptions
Cancer/testis antigen 14 ^², ³
putative tumor antigen ^²
sarcoma antigen 1 ^²

External Ids
HGNC: 30369¹
Entrez Gene: 55511²
UniProtKB: Q9NXZ1³
Ensembl: ENSG00000181433⁷

Search outside databases for aliases for SAGE1 gene

Previous GC identifers: GC0XP133682 GC0XP134701

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for SAGE1:

This gene belongs to a class of genes that are activated in tumors. These genes are expressed in

tumors of different histologic types but not in normal tissues, except for spermatogenic cells

and, for some, placenta. The proteins encoded by these genes appear to be strictly tumor specific,

and hence may be excellent sources of antigens for cancer immunotherapy. This gene is expressed in

sarcomas. [provided by RefSeq]

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the SAGE1 gene

Entrez Gene cytogenetic band: Xq26 Ensembl cytogenetic band: Xq26.3 HGNC cytogenetic band: Xq26

SAGE1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome X GeneLoc Exon Structure

GeneLoc location for GC0XP134803: (about GC identifiers)

Start:	134,803,451 bp from pter
End:	134,822,886 bp from pter
Size:	19,436 bases
Orientation:	plus strand

RefSeq DNA sequence:

NC_000023.9 NT_011786.15

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: SAGE1_HUMAN, Q9NXZ1 (See protein sequence)

Recommended Name: Sarcoma antigen 1

Size: 904 amino acids; 99225 Da

Secondary accessions: Q5JNW0

Post-translational modifications:

View phosphorylation sites using PhosphoSite²

REFSEQ proteins: NP_061136.2

ENSEMBL proteins:

ENSP00000359743 ENSP00000323191

Human Recombinant Proteins

	Browse Drug Discovery Central at Invitrogen for human recombinant proteins
	Browse Purified and Recombinant Proteins at Millipore
	Browse Human Recombinant Proteins at Sigma-Aldrich
	Browse R&D Systems for human recombinant proteins
	Browse recombinant and purified proteins available from Enzo Life Sciences
	Browse Abcam for Recombinant Proteins
	Human Recombinant Proteins from Abnova (SAGE1)

Browse Origene for full length recombinant human proteins expressed in human HEK293 cells

2 Gene Ontology (GO) cellular component terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005634	nucleus	IDA	18029348
GO:0005730	NOT nucleolus	IDA	18029348

About this table

Antibodies for SAGE1:

	Browse Antibodies Central at Invitrogen
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Sigma-Aldrich Antibodies for SAGE1
	Browse R&D Systems for Antibodies
	Search for antibodies at Abcam and the World's Antibody Gateway (free search engine of over 150 antibody companies)
	Monoclonal and Polyclonal Antibodies from Abnova (SAGE1)
	Novus Biologicals Antibody for SAGE1

Assays for SAGE1:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

ProtoNet protein and cluster: Q9NXZ1

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (SAGE1)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (SAGE1)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_018666

Applied Biosystems Silencer® siRNAs for SAGE1

Sigma-Aldrich siRNA for SAGE1

Sigma-Aldrich shRNA for SAGE1

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Browse Clone Ranger at Invitrogen for clones
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_018666
Myc/DDK tagged cDNA clone in CMV expression vector: NM_018666
untagged cDNA clone in CMV expression vector: NM_018666

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_018666

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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5 Interacting proteins for SAGE1 (ENSP00000359743³) via UniProtKB, MINT, and/or STRING

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
DDX43	ENSP00000359361³	STRING (score=.818)
MUCL1	ENSP00000311364³	STRING (score=.794)
SPEN	ENSP00000364912³	STRING (score=.744)
PLXDC1	ENSP00000323927³	STRING (score=.724)
REG4	ENSP00000346158³	STRING (score=.724)

About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for SAGE1
1 Novoseek chemical compound relationship for SAGE1 gene

Compound	Score	Articles	PubMed IDs for Articles with Shared Sentences (# sentences)
oligonucleotide	25.35	4	16098712 (1), 16041676 (1), 11860305 (1), 19073704 (1)

About this table

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (SAGE1)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (SAGE1)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_018666

Sigma-Aldrich siRNA for SAGE1

Sigma-Aldrich shRNA for SAGE1

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_018666

REFSEQ mRNAs for SAGE1 gene:

NM_018666.2

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_018666

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_018666
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_018666
                                 untagged cDNA clone in CMV expression vector: NM_018666

Additional cDNA sequence:

AJ278111.1 AK310412.1 BC144260.1

3 DOTS entries:

DT.75101167 DT.302879 DT.121309571

8 AceView cDNA sequences:

CD358947 BX118393 AW025754 AJ278111 AA608952 NM_018666 AA928800 AI911341

highest scoring ESTs for SAGE1:

AW004014 AA608952 AI624830 AI654710 AJ278111 AW197564 BF056519 AA928800 AI911341 AW025754

Unigene Cluster for SAGE1:

Sarcoma antigen 1

Hs.195292 [show with all ESTs]

Unigene Representative Sequence: AK310412

GeneLoc Exon Structure

4 Alternative Splicing Database (ASD) splice patterns (SP) for SAGE1

ExUns:	1a	·	1b	·	1c	·	1d	·	1e	·	1f	^	2	^	3	^	4	^	5a	·	5b	·	5c	^	6	^	7	^	8	^	9	^	10	^	11	^	12	^	13	^	14	^	15	^	16	^	17	^	18	^	19	^
SP1:											-		-										-
SP2:									-		-
SP3:									-		-		-
SP4:													-

ExUns:	20	^	21
SP1:
SP2:
SP3:
SP4:

About this scheme

ECgene alternative splicing isoforms for SAGE1

2 Ensembl transcripts including schematic representations:

ENST00000370709 ENST00000324447

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

SAGE1 expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for SAGE1

¹ / ² / ³

4 probe-sets matching SAGE1 gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
55302_at²^{, 3}	U95-C	3	1.00	0.75	0.87	1.58	AW004014	1.00	1.00	1.00	1
52253_at²^{, 3}	U95-B	3	0.50	0.65	0.96	0.64	AA608952	0.80	1.00	0.91	1
220793_at²^{, 3}	U133-A	3	1.00	0.86	--	--	NM_018666	0.60	1.00	0.82	1
220793_at²	U133Plus2	3	1.00	0.86	--	--	--	--	--	--	--

About this table

Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: --

SOURCE GeneReport for Unigene cluster: Hs.195292
UniProtKB/Swiss-Prot: SAGE1_HUMAN, Q9NXZ1
Tissue specificity: Expressed mainly in bladder, lung, head and neck carcinomas. Not expressed in
normal tissues except for testis

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for SAGE1 gene from 2 species

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
chimpanzee (Pan troglodytes)	SAGE1¹	--	sarcoma antigen 1	98.99(n) 97.9(a)	465878 XM_001137139.1 XP_001137139.1
cow (Bos taurus)	SAGE1¹	--	sarcoma antigen 1	74.58(n) 55.94(a)	616666 XM_868745.2 XP_873838.2

About this table Species with no ortholog for SAGE1

ENSEMBL Gene Tree for SAGE1

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for SAGE1 gene

INTS6² CT45A2² CT45A5² CT45A1² CT45A4² CT45A6² DDX26B² CT45A3²

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/90 NCBI SNPs in SAGE1 are shown (see all 90 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 22)

AB	SNP ID	Valid	Chr X pos	Sequence	Recs	AA Chg	Type	More	Recs	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--			--
--	rs4829799^1,2	A,C,F,H	134821671(+)	`GTCTTT/CGGTGG`	1	S/L	mis¹		13	EU EA WA NA	884
	rs17330794^1,2	C,F,H	134802256(+)	`ACCCCG/AATTCC`	1	--	ng5¹		7	NA EU EA WA	534
	rs2501476^1,2	F,H	134802088(+)	`TAAATG/TAACAC`	1	--	ng5¹		4	EU EA WA	402
	rs35470903^1,2	C,F	134821480(-)	`TCAGAA/CTTTGA`	1	N/K	mis¹		5	NA EU EA WA	256
--	rs7057232^1,2	H	134821727(+)	`AAATTA/GATGAT`	1	N/D	mis¹		1	WA	116
--	rs6635182^1,2	H	134819941(+)	`CACCAG/CCATTT`	1	P/A	mis¹ ese³		4	EU EA WA	416
	rs5974570^1,2	A,C,F,H	134818744(+)	`CCCCAA/GACTGA`	1	Q/Q	syn¹ ese³		5	EU EA WA NA	462
--	rs12014884^1,2	A,C,F,H	134814366(+)	`GATAAT/CGTCTT`	1	N/N	syn¹		4	EA WA NA	318
--	rs4829584^1,2	A,C,F	134821720(+)	`GCAAAG/AAAAAT`	1	K/K	syn¹		4	NA	188
--	rs5975628^1,2	A,C,F,H	134805002(+)	`ATAACT/CAGCTG`	1	--	int¹		11	EU EA WA NA	762

About this table

HapMap Linkage Disequilibrium images for SAGE1 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 300359

6 Novoseek disease relationships for SAGE1 gene

Disease	Score	Articles	PubMed IDs for Articles with Shared Sentences (# sentences)
tumors	26.58	21	15477757 (2), 9624216 (1), 19171422 (1), 17090319 (1) (see all 13)
lung carcinoma	20.81	2	10919659 (1), 14624785 (1)
cancer	18.14	10	14640911 (2), 16061876 (2), 10704282 (1), 12809678 (1) (see all 8)
glioma	15.80	2	17519038 (1), 11300934 (1)
breast cancer	0.00	2	11850811 (1), 17883861 (1)
leukemia	0.00	1	14706139 (1)

About this table

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
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10/75 PubMed articles for SAGE1 gene (see all 75 ):

Identification on a human sarcoma of two new genes with tumor- specific expression. (PubMed id 10919659)^{1, 2, 3, 4} Martelange V.M.F.... Boon T. (2000)
Determination of cellularly processed HLA-A2402-restricted novel CTL epitopes derived from two cancer germ line genes, MAGE-A4 and SAGE. (PubMed id 16061876)^{1, 3} Miyahara Y....Shiku H. (2005)
Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348)³ Barbe L....Andersson-Svahn H. (2008)
The DNA sequence of the human X chromosome. (PubMed id 15772651)⁴ Ross M.T.... Bentley D.R. (2005)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)³ Strausberg R.L....Marra M.A. (2002)
Technology evaluation: SAGE, Genzyme molecular oncology. (PubMed id 11249736)¹ Bartlett J. (2001)
Differentially expressed genes in pancreatic ductal adenocarcinomas identified through serial analysis of gene expression. (PubMed id 15477757)¹ Hustinx S.R....Hruban R.H. (2004)
A feature selection approach for identification of signature genes from SAGE data. (PubMed id 17519038)¹ Barrera J....Brentani H. (2007)
Pan-genome isolation of low abundance transcripts using SAGE tag. (PubMed id 17113583)¹ Kim Y.C....Wang S.M. (2006)
Computational Analysis of Gene Identification with SAGE. (PubMed id 12162890)¹ Clark T....Wang S.M. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
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Entrez Gene: 55511	HGNC: 30369	AceView: SAGE1	Ensembl:ENSG00000181433	euGenes: HUgn55511
ECgene: SAGE1	H-InvDB: SAGE1

(According to HUGE)
About This Section

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
ATLAS Chromosomes in Cancer entry for SAGE1	Genetics and Cytogenetics in Oncology and Haematology

Licensable Technologies for SAGE1
(Available from WIS Yeda, Salk, Tufts)

About This Section

(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
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Products for SAGE1:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for SAGE1-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for SAGE1		Antibodies for SAGE1
	Explore super-pooled esiRNAs		Browse proteins at Sigma-Aldrich
	Lentivirus-delivered shRNAs for SAGE1		Browse small molecules at Sigma-Aldrich
	"Your Favorite Gene" Pathways		feedback

	Antibodies		Primer Pairs
	Cell Culture Products		ELISAs
	Flow Cytometry Kits		Protease Activity Assays & Reagents
	Cell Selection/Detection Kits & Reagents		ELISA/Assay Development Kits & Reagents
	Multiplex/Array Assay Kits & Reagents		ELISpot Kits & Development Modules
	Recombinant & Natural Proteins

	Recombinant Proteins (SAGE1)
	Antibodies (SAGE1)
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	Custom Service for Rabbit Pab from Full-length Protein

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Search Tocris compounds for SAGE1

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Antibodies for SAGE1

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SAGE1 Gene

protein-coding GIFtS: 46

Aliases &
Descriptions
for SAGE1

Summaries
for SAGE1

Genomic Location
for SAGE1

Proteins
for SAGE1

Protein Domains/
Families
for SAGE1

Gene Function
for SAGE1

Pathways & Interactions
for SAGE1

Drugs & Compounds
for SAGE1

Transcripts
for SAGE1

Expression
for SAGE1

Orthologs
for SAGE1

Paralogs
for SAGE1

SNPs/Variants
for SAGE1

Disorders & Mutations
for SAGE1

Medical News
for SAGE1

Publications
for SAGE1

Search for SAGE1

Genome Databases showing SAGE1

Other Databases showing SAGE1

Specialized Databases showing SAGE1

Licensable Technologies
for SAGE1

Services
for SAGE1

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

SAGE1 Gene

protein-coding GIFtS: 46

Aliases & Descriptionsfor SAGE1

Summariesfor SAGE1

Genomic Locationfor SAGE1

Proteinsfor SAGE1

Protein Domains/Familiesfor SAGE1

Gene Functionfor SAGE1

Pathways & Interactionsfor SAGE1

Drugs & Compoundsfor SAGE1

Transcriptsfor SAGE1

Expression for SAGE1

Orthologsfor SAGE1

Paralogsfor SAGE1

SNPs/Variantsfor SAGE1

Disorders & Mutationsfor SAGE1

Medical Newsfor SAGE1

Publicationsfor SAGE1

Search for SAGE1

Genome Databases showing SAGE1

Other Databases showing SAGE1

Specialized Databases showing SAGE1

Licensable Technologiesfor SAGE1

Servicesfor SAGE1

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for SAGE1

Summaries
for SAGE1

Genomic Location
for SAGE1

Proteins
for SAGE1

Protein Domains/
Families
for SAGE1

Gene Function
for SAGE1

Pathways & Interactions
for SAGE1

Drugs & Compounds
for SAGE1

Transcripts
for SAGE1

Expression
for SAGE1

Orthologs
for SAGE1

Paralogs
for SAGE1

SNPs/Variants
for SAGE1

Disorders & Mutations
for SAGE1

Medical News
for SAGE1

Publications
for SAGE1

Licensable Technologies
for SAGE1

Services
for SAGE1