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SAC3D1 Gene

protein-coding GIFtS: 49

GC11P064566

SAC3 domain containing 1
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
About This Section

Aliases
HSU79266 ^¹, ²
SHD1 ^¹, ², ³

Descriptions
SAC3 domain containing 1 ^²
SAC3 homology domain-containing protein 1 ^³
Sac3 homology domain 1 ^²

External Ids
HGNC: 30179¹
Entrez Gene: 29901²
UniProtKB: A6NKF1³
Ensembl: ENSG00000168061⁷

Search outside databases for aliases for SAC3D1 gene

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: SAC31_HUMAN, A6NKF1

Function: Involved in centrosome duplication and mitotic progression (By similarity)

Gene Wiki entry for SAC3D1

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the SAC3D1 gene

Entrez Gene cytogenetic band: 11q13.1 Ensembl cytogenetic band: 11q13.1 HGNC cytogenetic band: 11q13.1

SAC3D1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure

GeneLoc location for GC11P064566: (about GC identifiers)

Start:	64,564,952 bp from pter
End:	64,568,876 bp from pter
Size:	3,925 bases
Orientation:	plus strand

RefSeq DNA sequence:

NC_000011.8 NT_033903.7

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: SAC31_HUMAN, A6NKF1 (See protein sequence)

Recommended Name: SAC3 domain-containing protein 1

Size: 404 amino acids; 43553 Da

Subunit: May be part of a SHFM1-containing complex

Subcellular location: Centrosome (By similarity). Spindle (By similarity). Note=Localizes on

centrosomes in interphase cells and at spindles in mitosis (By similarity)

Caution: It is uncertain whether Met-1 or Met-47 is the initiator

Sequence caution: Sequence=AP003068; Type=Erroneous gene model prediction;

Secondary accessions: A8MX08 Q99773

Alternative splicing: 2 isoforms: A6NKF1-1 A6NKF1-2

Post-translational modifications:

View phosphorylation sites using PhosphoSite²

REFSEQ proteins: NP_037431.3

ENSEMBL proteins:

ENSP00000381824 ENSP00000301885

Human Recombinant Proteins

	Browse Drug Discovery Central at Invitrogen for human recombinant proteins
	Browse Purified and Recombinant Proteins at Millipore
	Browse Human Recombinant Proteins at Sigma-Aldrich
	Browse R&D Systems for human recombinant proteins
	Browse recombinant and purified proteins available from Enzo Life Sciences
	Browse Abcam for Recombinant Proteins
	Human Recombinant Proteins from Abnova (SAC3D1)

Browse Origene for full length recombinant human proteins expressed in human HEK293 cells

2 Gene Ontology (GO) cellular component terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005813	centrosome	IEA	--
GO:0005819	spindle	IEA	--

About this table

Antibodies for SAC3D1:

	Browse Antibodies Central at Invitrogen
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Browse Antibodies at Sigma-Aldrich
	Browse R&D Systems for Antibodies
	Search for antibodies at Abcam and the World's Antibody Gateway (free search engine of over 150 antibody companies)
	Browse Abnova for Monoclonal and Polyclonal Antibodies
	Search Novus for antibodies for SAC3D1

Assays for SAC3D1:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

Graphical View of Domain Structure for InterPro Entry A6NKF1

ProtoNet protein and cluster: A6NKF1

UniProtKB/Swiss-Prot: SAC31_HUMAN, A6NKF1

Similarity: Belongs to the SAC3 family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (SAC3D1)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_013299

Applied Biosystems Silencer® siRNAs for SAC3D1

Sigma-Aldrich siRNA for SAC3D1

Sigma-Aldrich shRNA for SAC3D1

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Browse Clone Ranger at Invitrogen for clones
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_013299
Myc/DDK tagged cDNA clone in CMV expression vector: NM_013299
untagged cDNA clone in CMV expression vector: NM_013299

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_013299

UniProtKB/Swiss-Prot: SAC31_HUMAN, A6NKF1

Function: Involved in centrosome duplication and mitotic progression (By similarity)

2 MGI mutant phenotypes (inferred from 1 allele) (MGI details for Sac3d1):

hematopoietic system

immune system

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

2 Interacting proteins for SAC3D1 (ENSP00000301885³) via UniProtKB, MINT, and/or STRING

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
STAT5A	ENSP00000341208³	STRING (score=.921)
STAT5B	ENSP00000293328³	STRING (score=.921)

About this table

5 Gene Ontology (GO) biological process terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0007049	cell cycle	IEA	--
GO:0007067	mitosis	IEA	--
GO:0051225	spindle assembly	IEA	--
GO:0051298	centrosome duplication	IEA	--
GO:0051301	cell division	IEA	--

About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for SAC3D1

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (SAC3D1)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_013299

Sigma-Aldrich siRNA for SAC3D1

Sigma-Aldrich shRNA for SAC3D1

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_013299

REFSEQ mRNAs for SAC3D1 gene:

NM_013299.3

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_013299

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_013299
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_013299
                                 untagged cDNA clone in CMV expression vector: NM_013299

Additional cDNA sequence:

BC007448.2 CR607647.1 CR610135.1 CR610152.1 CR614123.1 U79266.1

9 DOTS entries:

DT.95168184 DT.100789170 DT.100789169 DT.95168186 DT.100840053 DT.40109964 DT.91748226 DT.95080419

DT.95168183

24/108 AceView cDNA sequences (see all 108 ):

CR607647 CB242249 AU104849 CR610135 CR614123 BI088075 CA429948 BU631102

AI700717 CR610152 AA293826 BU632849 BM479621 AU104850 AI084143 AI341905

NM_013299 CD251271 BM453718 BG830015 BM931753 BG831206 BX412250 R24387

highest scoring ESTs for SAC3D1:

U79266 AA535964 AA600932 AI078508 AI084143 AI192000 AI341905 AI423980 AI498233 AI700717

Unigene Cluster for SAC3D1:

SAC3 domain containing 1

Hs.23642 [show with all ESTs]

Unigene Representative Sequence: NM_013299

GeneLoc Exon Structure

5 Alternative Splicing Database (ASD) splice patterns (SP) for SAC3D1

ExUns:	1	^	2a	·	2b	·	2c	·	2d	·	2e	^	3	^	4a	·	4b	·	4c	·	4d
SP1:			-		-		-		-		-
SP2:											-
SP3:			-
SP4:											-		-
SP5:													-

About this scheme

ECgene alternative splicing isoforms for SAC3D1

2 Ensembl transcripts including schematic representations:

ENST00000398846 ENST00000301885

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

SAC3D1 expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for SAC3D1

¹ / ² / ³

3 probe-sets matching SAC3D1 gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
39262_at²^{, 3}	U95-A	1	1.00	1.00	1.00	1.00	U79266	1.00	1.00	1.00	1
205449_at²^{, 3}	U133-A	1	1.00	1.00	--	--	NM_013299	0.60	1.00	0.82	1
205449_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

About this table

Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: GTTTCCAGGT

SOURCE GeneReport for Unigene cluster: Hs.23642

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for SAC3D1 gene from 5 species

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
dog (Canis familiaris)	SAC3D1¹	--	SAC3 domain containing 1	84.64(n) 84.92(a)	483752 XM_540873.2 XP_540873.2
mouse (Mus musculus)	Sac3d1^{1, 5}	19⁵	SAC3 domain containing 1^{1, 5}	78.59(n)¹ 78.03(a)¹	66406¹ NM_133678.3¹ NP_598439.3¹ AI849500⁵ AJ131957⁵ (see all 14)
zebrafish (Danio rerio)	wu:fd60e07¹	--	wu:fd60e07	51.47(n) 43.2(a)	561420 XM_684826.3 XP_689918.2
fruit fly (Drosophila melanogaster)	CG3437¹	--	CG3437	42.34(n) 29.81(a)	39096 NM_140061.1 NP_648318.1
African malaria mosquito (Anopheles gambiae)	AgaP_AGAP007551¹	--	AGAP007551-PA	42.07(n) 30.77(a)	1269681 XM_308326.2 XP_308326.2

About this table Species with no ortholog for SAC3D1

ENSEMBL Gene Tree for SAC3D1

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for SAC3D1 gene

MCM3AP²

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/34 NCBI SNPs in SAC3D1 are shown (see all 34 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 40)

AB	SNP ID	Valid	Chr 11 pos	Sequence	Recs	AA Chg	Type	More	Recs	Allele freq	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--				--
	rs3741390^1,2	C,F	64565620(-)	`GGCGCA/GGGCGA`	1	R/C	mis¹ ese³		1		EA	1488
--	rs10160811^1,2	C	64565223(+)	`CCCAGA/CCAGGT`	1	--	ut5¹ ese³		0	--	--	--	--
--	rs2458297^1,2	A,C,F	64566132(+)	`GGAGAG/ATTGGT`	1	--	int¹ trp³		1		EA	172
	rs3862374^1,2	A,C,F	64566017(-)	`AGGGGA/GCTAAT`	1	--	int¹		1		MN	184
--	rs11231929^1,2	A,C	64567347(+)	`AAtttA/Gttttt`	1	--	int¹		0	--	--	--	--
--	rs476824^1,2	A,C	64566879(+)	`gtcacC/Tgcacc`	1	--	int¹		0	--	--	--	--
	rs588013^1,2	F	64567795(+)	`TCTGAG/AACTCT`	1	--	int¹		1		MN	184
--	rs626483^1,2	C	64566747(+)	`accacA/Gcccgg`	1	--	int¹		0	--	--	--	--
--	rs2507813^1,2	H	64566317(+)	`ATTTTT/GGTATT`	1	--	int¹		4		EU EA WA	418
	rs544331^1,2	C	64567805(+)	`TTCCAA/GAAGGG`	1	--	int¹ trp³		0	--	--	--	--

About this table

HapMap Linkage Disequilibrium images for SAC3D1 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
About This Section

10/13 PubMed articles for SAC3D1 gene (see all 13 ):

Large-scale concatenation cDNA sequencing. (PubMed id 9110174)^{2, 3, 4} Yu W....Gibbs R.A. (1997)
Integrator, a multiprotein mediator of small nuclear RNA processing, associates with the C-terminal repeat of RNA polymerase II. (PubMed id 16239144)^{3, 4} Baillat D....Shiekhattar R. (2005)
Large-scale characterization of HeLa cell nuclear phosphoproteins. (PubMed id 15302935)^{3, 4} Beausoleil S.A....Gygi S.P. (2004)
A "double adaptor" method for improved shotgun library construction. (PubMed id 8619474)^{2, 3} Andersson B....Gibbs R.A. (1996)
The Sac3 homologue shd1 is involved in mitotic progression in mammalian cells. (PubMed id 15322101)^{1, 3} Khuda S.E....Sakaguchi N. (2004)
SHD1 is a novel cytokine-inducible, negative feedback regulator of STAT5-dependent transcription. (PubMed id 18838617)³ Nakajima H....Handa M. (2009)
A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648)⁴ Dephoure N.... Gygi S.P. (2008)
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)⁴ Olsen J.V....Mann M. (2006)
Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)³ Kimura K.... Sugano S. (2006)
Human chromosome 11 DNA sequence and analysis including novel gene identification. (PubMed id 16554811)⁴ Taylor T.D....Sakaki Y. (2006)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 29901	HGNC: 30179	AceView: HSU79266	Ensembl:ENSG00000168061	euGenes: HUgn29901
ECgene: SAC3D1	H-InvDB: SAC3D1

(According to HUGE)
About This Section

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Licensable Technologies for SAC3D1
(Available from WIS Yeda, Salk, Tufts)

About This Section

(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
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Products for SAC3D1:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for SAC3D1-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for SAC3D1		Browse antibodies at Sigma-Aldrich
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	Lentivirus-delivered shRNAs for SAC3D1		Browse small molecules at Sigma-Aldrich
	"Your Favorite Gene" Pathways		feedback

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	Multiplex/Array Assay Kits & Reagents		ELISpot Kits & Development Modules
	Recombinant & Natural Proteins

	Recombinant Proteins (SAC3D1)
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SAC3D1 Gene

protein-coding GIFtS: 49

Aliases &
Descriptions
for SAC3D1

Summaries
for SAC3D1

Genomic Location
for SAC3D1

Proteins
for SAC3D1

Protein Domains/
Families
for SAC3D1

Gene Function
for SAC3D1

Pathways & Interactions
for SAC3D1

Drugs & Compounds
for SAC3D1

Transcripts
for SAC3D1

Expression
for SAC3D1

Orthologs
for SAC3D1

Paralogs
for SAC3D1

SNPs/Variants
for SAC3D1

Disorders & Mutations
for SAC3D1

Medical News
for SAC3D1

Publications
for SAC3D1

Search for SAC3D1

Genome Databases showing SAC3D1

Other Databases showing SAC3D1

Specialized Databases showing SAC3D1

Licensable Technologies
for SAC3D1

Services
for SAC3D1

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

SAC3D1 Gene

protein-coding GIFtS: 49

Aliases & Descriptionsfor SAC3D1

Summariesfor SAC3D1

Genomic Locationfor SAC3D1

Proteinsfor SAC3D1

Protein Domains/Familiesfor SAC3D1

Gene Functionfor SAC3D1

Pathways & Interactionsfor SAC3D1

Drugs & Compoundsfor SAC3D1

Transcriptsfor SAC3D1

Expression for SAC3D1

Orthologsfor SAC3D1

Paralogsfor SAC3D1

SNPs/Variantsfor SAC3D1

Disorders & Mutationsfor SAC3D1

Medical Newsfor SAC3D1

Publicationsfor SAC3D1

Search for SAC3D1

Genome Databases showing SAC3D1

Other Databases showing SAC3D1

Specialized Databases showing SAC3D1

Licensable Technologiesfor SAC3D1

Servicesfor SAC3D1

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for SAC3D1

Summaries
for SAC3D1

Genomic Location
for SAC3D1

Proteins
for SAC3D1

Protein Domains/
Families
for SAC3D1

Gene Function
for SAC3D1

Pathways & Interactions
for SAC3D1

Drugs & Compounds
for SAC3D1

Transcripts
for SAC3D1

Expression
for SAC3D1

Orthologs
for SAC3D1

Paralogs
for SAC3D1

SNPs/Variants
for SAC3D1

Disorders & Mutations
for SAC3D1

Medical News
for SAC3D1

Publications
for SAC3D1

Licensable Technologies
for SAC3D1

Services
for SAC3D1