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SAAL1 Gene

protein-coding   GIFtS: 46
GCID: GC11M018059

Serum Amyloid A-Like 1

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Serum Amyloid A-Like 11 2
SPACIA12
Protein SAAL12
Synoviocyte Proliferation-Associated In Collagen-Induced Arthritis 12

External Ids:    HGNC: 251581   Entrez Gene: 1131742   Ensembl: ENSG000001667887   UniProtKB: Q96ER33   

Export aliases for SAAL1 gene to outside databases

Previous GC identifer: GC11M017784


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for SAAL1 Gene:
SAAL1 (serum amyloid A-like 1) is a protein-coding gene.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000011.9  NC_018922.2  NT_009237.19  
Regulatory elements:
   Regulatory transcription factor binding sites in the SAAL1 gene promoter:
         HOXA9B   HOXA9   Max1   TBP   Brachyury   FOXD3   FOXJ2 (long isoform)   HOXA5   FOXJ2   c-Myc   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidSAAL1 promoter sequence
   Search Chromatin IP Primers for SAAL1

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat SAAL1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11p15.1   Ensembl cytogenetic band:  11p15.1   HGNC cytogenetic band: 11p15.1

SAAL1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SAAL1 gene location

GeneLoc information about chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11M018059:  view genomic region     (about GC identifiers)

Start:
18,091,482 bp from pter      End:
18,127,638 bp from pter
Size:
36,157 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: SAAL1_HUMAN, Q96ER3 (See protein sequence)
Recommended Name: Protein SAAL1  
Size: 474 amino acids; 53558 Da
Secondary accessions: A6NH05

Explore the universe of human proteins at neXtProt for SAAL1: NX_Q96ER3

Explore proteomics data for SAAL1 at MOPED

Post-translational modifications: 

  • Ubiquitination2 at Lys209, Lys254
  • Modification sites at PhosphoSitePlus

  • See SAAL1 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_612430.2  
    ENSEMBL proteins: 
     ENSP00000432487   ENSP00000300013   ENSP00000432044   ENSP00000436031   ENSP00000431160  
     ENSP00000433946   ENSP00000432216   ENSP00000431489  

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    antibodies-online proteins for SAAL1 (4 products) 

     
    antibodies-online peptides for SAAL1

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    antibodies-online antibodies for SAAL1 (16 products) 

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    Cloud-Clone Corp. CLIAs for SAAL1
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    antibodies-online kits for SAAL1 (4 products) 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    3 InterPro protein domains:
     IPR011989 ARM-like
     IPR000096 Serum_amyloid_A
     IPR016024 ARM-type_fold

    Graphical View of Domain Structure for InterPro Entry Q96ER3

    ProtoNet protein and cluster: Q96ER3

    UniProtKB/Swiss-Prot: SAAL1_HUMAN, Q96ER3
    Similarity: Belongs to the SAAL1 family


    Find genes that share domains with SAAL1           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 1 molecular function term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005488binding ----
         
    Find genes that share ontologies with SAAL1           About GenesLikeMe


    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for SAAL1

    miRNA
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    Browse Sino Biological Human cDNA Clones
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    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat SAAL1

    Cell Line
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SAAL1


    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytosol2
    extracellular2
    nucleus2

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576extracellular region IEA--

    Find genes that share ontologies with SAAL1           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for SAAL1
    Interactions:

        Search GeneGlobe Interaction Network for SAAL1

    STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

    5 Interacting proteins for SAAL1 (Q96ER32, 3 ENSP000003000134) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    MARK3P274482, 3MINT-63625 I2D: score=5 
    PHLDA3Q9Y5J53, ENSP000003562784I2D: score=1 STRING: ENSP00000356278
    USP19O949663, ENSP000003818634I2D: score=2 STRING: ENSP00000381863
    SNW1Q135733I2D: score=1 
    UBCENSP000003448184STRING: ENSP00000344818
    About this table

    Gene Ontology (GO): 1 biological process term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006953acute-phase response IEA--

    Find genes that share ontologies with SAAL1           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for SAAL1



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for SAAL1 gene: 
    NM_138421.2  

    Unigene Cluster for SAAL1:

    Serum amyloid A-like 1
    Hs.591998  [show with all ESTs]
    Unigene Representative Sequence: NM_138421
    15 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000532403 ENST00000524803(uc001mnq.3 uc001mnr.3) ENST00000300013
    ENST00000534721 ENST00000530436 ENST00000531751 ENST00000531581 ENST00000530237
    ENST00000532452 ENST00000529318 ENST00000531216 ENST00000533851 ENST00000530180
    ENST00000528002 ENST00000530736
    miRNA
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    Predesigned siRNA for gene silencing in human, mouse, rat SAAL1
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    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat SAAL1
    Primer
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    Pre-validated RT2 qPCR Primer Assay in human, mouse, rat SAAL1
      QuantiTect SYBR Green Assays in human, mouse, rat SAAL1
      QuantiFast Probe-based Assays in human, mouse, rat SAAL1

    Additional mRNA sequence: 

    AB489136.1 AK123457.1 BC012010.1 

    10 DOTS entries:

    DT.111653  DT.100030113  DT.75130308  DT.95075371  DT.95075361  DT.100712941  DT.100848319  DT.75101786 
    DT.100660651  DT.95075372 

    Selected AceView cDNA sequences (see all 170):

    CR616217 AA748791 CR597687 AI682294 CR601933 AW403967 BQ690608 BQ679057 
    BU173372 CR590267 BM772853 BE795910 BM716609 BG759763 CA445471 CR624243 
    BU150462 BM825094 BU168437 BM772190 BQ877383 AA360962 BQ679170 BQ877417 

    GeneLoc Exon Structure

    Selected Alternative Splicing Database (ASD) splice patterns (SP) for SAAL1 (see all 6)    About this scheme

    ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7a · 7b ^ 8 ^ 9a · 9b ^ 10 ^ 11a · 11b ^ 12 ^ 13
    SP1:                    -           -           -                                         -               
    SP2:                    -           -           -                                         -               
    SP3:                                -           -                                   -     -               
    SP4:                                                                                                      
    SP5:                                                                                                      


    ECgene alternative splicing isoforms for SAAL1

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    SAAL1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: AATTCTGCCA
    SAAL1 Expression
    About this image

    SAAL1 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    SAAL1 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.591998
        Custom PCR Arrays for SAAL1
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SAAL1

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for SAAL1 gene from Selected species (see all 13)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Saal11 , 5 serum amyloid A-like 11, 5 82.28(n)1
    79.75(a)1
      7 (30.48 cM)5
    789351  NM_030233.11  NP_084509.11 
     466861085 
    chicken
    (Gallus gallus)
    Aves SAAL11 serum amyloid A-like 1 72.73(n)
    70.24(a)
      100857722  XM_004941432.1  XP_004941489.1 
    lizard
    (Anolis carolinensis)
    Reptilia SAAL16
    serum amyloid A-like 1
    63(a)
    1 ↔ 1
    1(67690956-67709418)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.75042 Xenopus laevis transcribed sequences 71.16(n)    CF286264.1 
    zebrafish
    (Danio rerio)
    Actinopterygii zgc555052 hypothetical protein MGC55505 71.8(n)   393104  BC044415.1 


    ENSEMBL Gene Tree for SAAL1 (if available)
    TreeFam Gene Tree for SAAL1 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for SAAL1 gene
    1 SIMAP similar gene for SAAL1 using alignment to 8 protein entries:     SAAL1_HUMAN (see all proteins):
    SPACIA1

    Find genes that share paralogs with SAAL1           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for SAAL1 (see all 603)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 11 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1382665521,2
    --18101398(+) CAGATC/TACGAG 1 -- int10--------
    rs1827230351,2
    --18101417(+) GAGACC/TATCCT 1 -- int10--------
    rs1870931351,2
    --18101418(+) AGACCA/GTCCTG 1 -- int10--------
    rs3764590501,2
    C--18101422(+) CATCCC/TGCTAA 1 -- int10--------
    rs3688500911,2
    C--18101425(+) CCTGGC/TAACAC 1 -- int10--------
    rs79409381,2
    C,F--18101426(+) CTGGCT/CAACAC 1 -- int13Minor allele frequency- C:0.33NA 6
    rs1915448011,2
    --18101431(+) TAACAC/TAGTGA 1 -- int10--------
    rs1823170041,2
    C--18101432(+) AACACA/GGTGAA 1 -- int10--------
    rs79409411,2
    C,F,A--18101442(+) AACCCC/TGTCTC 1 -- int15Minor allele frequency- T:0.22NA WA CSA 9
    rs1875263161,2
    --18101443(+) ACCCTA/GTCTCT 1 -- int10--------

    HapMap Linkage Disequilibrium report for SAAL1 (18091482 - 18127638 bp)

    Structural Variations
          Database of Genomic Variants (DGV) variations for SAAL1: --
    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing SAAL1
    DNA2.0 Custom Variant and Variant Library Synthesis for SAAL1

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for SAAL1 gene, integrated from 10 sources (see all 21):
    (articles sorted by number of sources associating them with SAAL1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    2. Characterization of the EGFR interactome reveals associated protein complex networks and intracellular receptor dynamics. (PubMed id 23956138)1 Foerster S....Ritter C.A. (Proteomics 2013)
    3. Characterization of carbonic anhydrase IX interactome reveals proteins assisting its nuclear localization in hypoxic cells. (PubMed id 23181366)1 Buanne P....Zambrano N. (J. Proteome Res. 2013)
    4. A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (Cell 2012)
    5. Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass. (PubMed id 23000965)1 Povlsen L.K....Choudhary C. (Nat. Cell Biol. 2012)
    6. Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (amp 2012)
    7. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (BMC Syst. Biol. 2011)
    8. A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. (PubMed id 21890473)1 Wagner S.A....Choudhary C. (amp 2011)
    9. Systematic and quantitative assessment of the ubiquitin-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (Mol. Cell 2011)
    10. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (amp 2011)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 113174 HGNC: 25158 AceView: LOC113174 Ensembl:ENSG00000166788 euGenes: HUgn113174
    ECgene: SAAL1 H-InvDB: SAAL1

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for SAAL1 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for SAAL1 gene:
    Search GeneIP for patents involving SAAL1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from genOway)
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     Block miRNA regulation of human, mouse, rat SAAL1 using miScript Target Protectors SeqTarget long-range PCR primers for resequencing SAAL1
     DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat SAAL1 Predesigned siRNA for gene silencing in human, mouse, rat SAAL1
     QuantiFast Probe-based Assays in human, mouse, rat SAAL1 QuantiTect SYBR Green Assays in human, mouse, rat SAAL1
     Custom PCR Arrays for SAAL1 Search Chromatin IP Primers for SAAL1
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