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Aliases for SAA3P Gene

Aliases for SAA3P Gene

  • Serum Amyloid A3 Pseudogene 2 3 5
  • SAA3 3

External Ids for SAA3P Gene

Previous HGNC Symbols for SAA3P Gene

  • SAA3

Previous GeneCards Identifiers for SAA3P Gene

  • GC11M019254
  • GC11M019076
  • GC11M018174
  • GC11M018098
  • GC11M018090
  • GC11M017816
  • GC11M018134

Summaries for SAA3P Gene

GeneCards Summary for SAA3P Gene

SAA3P (Serum Amyloid A3 Pseudogene) is a Pseudogene. Among its related pathways are Selenium Micronutrient Network.

Additional gene information for SAA3P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SAA3P Gene

Genomics for SAA3P Gene

Regulatory Elements for SAA3P Gene

Enhancers for SAA3P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11H018115 0.8 ENCODE 0.7 +0.5 464 0 ELF3 RB1 ZSCAN4 ARID4B RAD21 ZEB1 ETS1 ZNF143 ZNF654 MXD4 SAA3P HIGD1AP5
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SAA3P on UCSC Golden Path with GeneCards custom track

Genomic Location for SAA3P Gene

Chromosome:
11
Start:
18,112,472 bp from pter
End:
18,116,132 bp from pter
Size:
3,661 bases
Orientation:
Minus strand

Genomic View for SAA3P Gene

Genes around SAA3P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SAA3P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SAA3P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SAA3P Gene

Proteins for SAA3P Gene

Post-translational modifications for SAA3P Gene

No Post-translational modifications

No data available for DME Specific Peptides for SAA3P Gene

Domains & Families for SAA3P Gene

Suggested Antigen Peptide Sequences for SAA3P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for SAA3P Gene

Function for SAA3P Gene

Molecular function for SAA3P Gene

GENATLAS Biochemistry:
serum amyloid A3,pseudogene,constitutively expressed

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SAA3P
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SAA3P Gene

Localization for SAA3P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SAA3P Gene

Pathways & Interactions for SAA3P Gene

genes like me logo Genes that share pathways with SAA3P: view

Pathways by source for SAA3P Gene

Interacting Proteins for SAA3P Gene

Gene Ontology (GO) - Biological Process for SAA3P Gene

None

No data available for SIGNOR curated interactions for SAA3P Gene

Drugs & Compounds for SAA3P Gene

No Compound Related Data Available

Transcripts for SAA3P Gene

mRNA/cDNA for SAA3P Gene

(1) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SAA3P
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SAA3P Gene

No ASD Table

Relevant External Links for SAA3P Gene

GeneLoc Exon Structure for
SAA3P
ECgene alternative splicing isoforms for
SAA3P

Expression for SAA3P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SAA3P Gene

mRNA differential expression in normal tissues according to GTEx for SAA3P Gene

This gene is overexpressed in Testis (x31.6), Pituitary (x10.2), Spleen (x6.2), and Breast - Mammary Tissue (x4.9).

Protein differential expression in normal tissues from HIPED for SAA3P Gene

This gene is overexpressed in Heart (33.9), Urine (19.7), and Serum (15.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for SAA3P Gene



Protein tissue co-expression partners for SAA3P Gene

NURSA nuclear receptor signaling pathways regulating expression of SAA3P Gene:

SAA3P

SOURCE GeneReport for Unigene cluster for SAA3P Gene:

Hs.454496
genes like me logo Genes that share expression patterns with SAA3P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SAA3P Gene

Orthologs for SAA3P Gene

Evolution for SAA3P Gene

ENSEMBL:
Gene Tree for SAA3P (if available)
TreeFam:
Gene Tree for SAA3P (if available)

No data available for Orthologs for SAA3P Gene

Paralogs for SAA3P Gene

No data available for Paralogs for SAA3P Gene

Variants for SAA3P Gene

Sequence variations from dbSNP and Humsavar for SAA3P Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000393342 -- 18,117,088(+) TCCCC(C/T)CTCAC upstream-variant-2KB
rs1001257443 -- 18,112,118(+) GGCTA(A/G)TCTAG downstream-variant-500B
rs1001815585 -- 18,112,161(+) ATTGT(A/G)TTTTT downstream-variant-500B
rs1002668972 -- 18,113,275(+) TCCAC(A/G)TGTCT nc-transcript-variant
rs1003216640 -- 18,114,764(+) CCACT(G/T)TATTA intron-variant

Relevant External Links for SAA3P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SAA3P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SAA3P Gene

Disorders for SAA3P Gene

Relevant External Links for SAA3P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SAA3P

No disorders were found for SAA3P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SAA3P Gene

Publications for SAA3P Gene

  1. Induction of human mammary-associated serum amyloid A3 expression by prolactin or lipopolysaccharide. (PMID: 12589816) Larson MA … McDonald TL (Biochemical and biophysical research communications 2003) 3 22 60
  2. Localization of four human serum amyloid A (SAA) protein superfamily genes to chromosome 11p: characterization of a fifth SAA-related gene sequence. (PMID: 8325654) Sellar GC … Whitehead AS (Genomics 1993) 2 3 60
  3. The human serum amyloid A (SAA)-encoding gene GSAA1: nucleotide sequence and possible autocrine-collagenase-inducer function. (PMID: 2558975) Sack GH … Talbot CC (Gene 1989) 2 3 60
  4. Long non-coding RNA MALAT1 regulates hyperglycaemia induced inflammatory process in the endothelial cells. (PMID: 25787249) Puthanveetil P … Chakrabarti S (Journal of cellular and molecular medicine 2015) 3 60
  5. A link between inflammation and metastasis: serum amyloid A1 and A3 induce metastasis, and are targets of metastasis-inducing S100A4. (PMID: 24469032) Hansen MT … Grigorian M (Oncogene 2015) 3 60

Products for SAA3P Gene

Sources for SAA3P Gene

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