Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SAA3P Gene

Aliases for SAA3P Gene

  • Serum Amyloid A3 Pseudogene 2 3
  • SAA3 3

External Ids for SAA3P Gene

Previous Symbols for SAA3P Gene

  • SAA3

Summaries for SAA3P Gene

GeneCards Summary for SAA3P Gene

SAA3P (Serum Amyloid A3 Pseudogene) is a Pseudogene. Among its related pathways are Selenium Pathway.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SAA3P Gene

Genomics for SAA3P Gene

Genomic Location for SAA3P Gene

Start:
18,112,472 bp from pter
End:
18,116,132 bp from pter
Size:
3,661 bases
Orientation:
Minus strand

Genomic View for SAA3P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SAA3P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SAA3P Gene

Regulatory Elements for SAA3P Gene

Proteins for SAA3P Gene

Post-translational modifications for SAA3P Gene

No Post-translational modifications

No data available for DME Specific Peptides for SAA3P Gene

Domains for SAA3P Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for SAA3P Gene

Function for SAA3P Gene

Molecular function for SAA3P Gene

GENATLAS Biochemistry: serum amyloid A3,pseudogene,constitutively expressed

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SAA3P Gene

Localization for SAA3P Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SAA3P Gene COMPARTMENTS Subcellular localization image for SAA3P gene
Compartment Confidence
extracellular 3
lysosome 1

No data available for Gene Ontology (GO) - Cellular Components for SAA3P Gene

Pathways for SAA3P Gene

SuperPathways for SAA3P Gene

Superpath Contained pathways
1 Selenium Pathway
genes like me logo Genes that share pathways with SAA3P: view

Pathways by source for SAA3P Gene

1 BioSystems pathway for SAA3P Gene

Interacting Proteins for SAA3P Gene

Gene Ontology (GO) - Biological Process for SAA3P Gene

None

Transcripts for SAA3P Gene

mRNA/cDNA for SAA3P Gene

(1) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SAA3P Gene

No ASD Table

Relevant External Links for SAA3P Gene

GeneLoc Exon Structure for
SAA3P
ECgene alternative splicing isoforms for
SAA3P

Expression for SAA3P Gene

mRNA expression in normal human tissues for SAA3P Gene

mRNA differential expression in normal tissues according to GTEx for SAA3P Gene

This gene is overexpressed in Testis (31.6), Pituitary (10.2), Spleen (6.2), and Breast - Mammary Tissue (4.9).

Integrated Proteomics: protein expression from for SAA3P Gene

SOURCE GeneReport for Unigene cluster for SAA3P Gene Hs.454496

genes like me logo Genes that share expressions with SAA3P: view

Orthologs for SAA3P Gene

Evolution for SAA3P Gene

ENSEMBL:
Gene Tree for SAA3P (if available)
TreeFam:
Gene Tree for SAA3P (if available)

No data available for Orthologs for SAA3P Gene

Paralogs for SAA3P Gene

No data available for Paralogs for SAA3P Gene

Variants for SAA3P Gene

Sequence variations from dbSNP and Humsavar for SAA3P Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs1399025 -- 18,114,450(-) CTAAG(C/T)ACCTC intron-variant
rs1513961 -- 18,116,929(-) AATTA(C/T)AATTG upstream-variant-2KB
rs2445153 -- 18,117,618(-) ttcct(A/G)tgagt upstream-variant-2KB
rs2445154 -- 18,117,568(-) gtgat(C/T)atggc upstream-variant-2KB
rs2458569 -- 18,116,198(-) GTGTG(C/T)GTGTG upstream-variant-2KB

Relevant External Links for SAA3P Gene

HapMap Linkage Disequilibrium report
SAA3P

No data available for Structural Variations from Database of Genomic Variants (DGV) for SAA3P Gene

Disorders for SAA3P Gene

(1) Novoseek inferred disease relationships for SAA3P Gene

Disease -log(P) Hits PubMed IDs
atherosclerosis 13.3 1
genes like me logo Genes that share disorders with SAA3P: view

No data available for UniProtKB/Swiss-Prot for SAA3P Gene

Publications for SAA3P Gene

  1. Induction of human mammary-associated serum amyloid A3 expression by prolactin or lipopolysaccharide. (PMID: 12589816) Larson M.A. … McDonald T.L. (Biochem. Biophys. Res. Commun. 2003) 3 23
  2. The human serum amyloid A (SAA)-encoding gene GSAA1: nucleotide sequence and possible autocrine-collagenase-inducer function. (PMID: 2558975) Sack G.H. … Talbot C.C. (Gene 1989) 2 3
  3. Localization of four human serum amyloid A (SAA) protein superfamily genes to chromosome 11p: characterization of a fifth SAA-related gene sequence. (PMID: 8325654) Sellar G.C. … Whitehead A.S. (Genomics 1993) 2 3
  4. The human plasma proteome: a nonredundant list developed by combination of four separate sources. (PMID: 14718574) Anderson N.L. … Lobley A. (Mol. Cell Proteomics 2004) 3
  5. A link between inflammation and metastasis: serum amyloid A1 and A3 induce metastasis, and are targets of metastasis-inducing S100A4. (PMID: 24469032) Hansen M.T. … Grigorian M. (Oncogene 2015) 3

Products for SAA3P Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate SAA3P
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SAA3P
    • Block miRNA regulation of SAA3P using miScript Target Protectors

    Sources for SAA3P Gene

    Back to Top

    Content