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Aliases & Descriptions for SAA1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases MGC111216 2 PIG4 1 , 2 SAA 2 , 3 TP53I4 1 , 2
Descriptions serum amyloid A1 2 tumor protein p53 inducible protein 4 2
Search outside databases for aliases for SAA1 genePrevious GC identifers: GC11P019408 GC11P019230 GC11P018326 GC11P018252
Summaries for SAA1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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UniProtKB/Swiss-Prot: SAA_HUMAN, P02735 Function : Major acute phase reactant. Apolipoprotein of the HDL complex
Gene Wiki entry for SAA1 (Serum_amyloid_A1)
Genomic Location for SAA1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the SAA1 gene Entrez Gene cytogenetic band: 11p15.1 Ensembl cytogenetic band: 11p15.1 HGNC cytogenetic band: 11p15.1 SAA1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure
GeneLoc location for GC11P018244:
(about GC identifiers )
Start:
18,244,348 bp from pter
End:
18,248,102 bp from pter
Size:
3,755 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000011.8 NT_009237.17 Proteins for SAA1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: SAA_HUMAN, P02735 (See
protein sequence )Recommended Name: Serum amyloid A protein precursor Size : 122 amino acids; 13532 Da
Subcellular location : Secreted
Mass spectrometry : Mass=11702; Mass_error=14; Method=MALDI; Range=19-122; Source=PubMed:12973732;
Mass spectrometry : Mass=11682.7; Method=MALDI; Range=19-122; Source=PubMed:12606051;
Mass spectrometry : Mass=11526.5; Method=MALDI; Range=20-122; Source=PubMed:12606051;
Mass spectrometry : Mass=11439.6; Method=MALDI; Range=21-122; Source=PubMed:12606051;
Mass spectrometry : Mass=11363.6; Method=MALDI; Range=20-121; Source=PubMed:12606051;
Mass spectrometry : Mass=11235.6; Method=MALDI; Range=20-120; Source=PubMed:12606051;
Mass spectrometry : Mass=10872.6; Method=MALDI; Range=22-119; Source=PubMed:12606051;
Mass spectrometry : Mass=8337.5; Mass_error=0.8; Method=Electrospray; Range=19-94; Note=Withvariants Ala-70, Val-75, Asn-78 and 86-Leu-Thr-87; Source=PubMed:1463770;
Mass spectrometry : Mass=8390.9; Mass_error=0.2; Method=Electrospray; Range=19-94; Note=With variantAla-70; Source=PubMed:1463770;
Miscellaneous : Elevated serum SSA protein levels may be associated with lung cancer
Secondary accessions : P02736 P02737 Q16730 Q16834 Q16835 Q16879 Q3KRB3 Q6FG67 Q96QN0 Q9UCK9 Q9UCL0
Post-translational modifications:
This protein is the precursor of amyloid protein A, which is formed by the removal of approximately24 residues from the C-terminal end1
REFSEQ proteins (2 alternative transcripts):
NP_000322.2 NP_954630.1 ENSEMBL proteins: ENSP00000384906 ENSP00000348918 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for SAA1: Assays for SAA1:
Protein
Domains/ Families for SAA1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P02735 ProtoNet protein and cluster: P02735
1 Blocks protein family : IPB000096 Serum amyloid A protein UniProtKB/Swiss-Prot: SAA_HUMAN, P02735 Similarity : Belongs to the SAA family
Gene Function for SAA1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_000331 Applied Biosystems Silencer ® siRNAs for SAA1 Sigma-Aldrich siRNA for SAA1 Sigma-Aldrich shRNA Panels and shRNA for SAA1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000331                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000331                                  untagged cDNA clones in CMV expression vector (see all 3 ): BC007022  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000331 UniProtKB/Swiss-Prot: SAA_HUMAN, P02735 Function : Major acute phase reactant. Apolipoprotein of the HDL complexInduction : Upon cytokine stimulation
Genatlas biochemistry entry for SAA1 :serum amyloid A,1,acute phase reactant,susceptibility gene for juvenile chronic arthritis and AAamyloidosis 1 Gene Ontology (GO) molecular function term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0001664 G-protein-coupled receptor binding
IDA 9892621
About this table
Pathways & Interactions for SAA1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for SAA1 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for SAA1 5/39 Interacting proteins for SAA1 (ENSP00000348918 3 ) via UniProtKB, MINT, and/or STRING (see all 39
)About this table 5/10 Gene Ontology (GO) biological process terms (links to tree view) (see all 10
):
About this table
Drugs & Compounds for SAA1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for SAA1 9 Novoseek chemical compound relationships for SAA1 gene
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
colchicine
54.47
4
14978665 (2)
fibrinogen
33.49
9
15515782 (2), 18500463 (2), 1705051 (2), 17103173 (1) (see all 6 )
lipid
12.67
13
18356319 (4), 18500463 (1), 15855262 (1), 17849429 (1) (see all 6 )
cholesterol
10.56
10
10191288 (5), 19223523 (1), 9109677 (1), 12818406 (1)
endotoxin
6.40
3
9295827 (3)
calcium
4.41
9
9428637 (4), 10608507 (1)
estradiol
0.00
1
15284085 (1)
glucose
0.00
4
15015151 (1), 16571858 (1)
steroid
0.00
2
12410800 (1)
About this table 3 PharmGKB drug compound relationships for SAA1 gene About this table
Transcripts for SAA1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
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shRNA from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_000331 Sigma-Aldrich siRNA for SAA1 Sigma-Aldrich shRNA Panels and shRNA for SAA1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_000331 NM_199161
REFSEQ mRNAs for SAA1 gene (2 alternative transcripts): NM_000331.3 NM_199161.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000331 NM_199161
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000331                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000331                                  untagged cDNA clones in CMV expression vector (see all 3 ): BC007022  
Additional cDNA sequence: BC007022.1 BC105796.1 CR542241.1 M10906.1 M23698.1 X51439.1 X51441.1 X51442.1 X51443.1
9 DOTS entries : DT.100797172 DT.120759598 DT.100797170 DT.91774129 DT.120759603 DT.75101001 DT.101984537 DT.95149900 DT.91774130
24/304 AceView cDNA sequences (see all 304
):AL598974 AL599003 AA344934 T69567 BG545227 M23698 CB999100 CD102084 BG565310 BG563257 BV189929 AA345608 BX490424 CR542241 BG564393 CD512583 NM_199161 BQ691948 BX457214 BM856453 BG568516 BG616738 BX102362 BG533276
highest scoring ESTs for SAA1 :AA829286 AA313033 AA313348 AA319980 AA320417 AA343711 AA343774 AA344933 AA345509 AA345538
Unigene Cluster for SAA1: Serum amyloid A1 Hs.632144 [show with all ESTs ] Unigene Representative Sequence: BG564669 GeneLoc Exon Structure 2 Ensembl transcripts including schematic representations : ENST00000405158
ENST00000356524
Expression for SAA1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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SAA1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for SAA1 1 / 2 / 3
5 probe-sets matching SAA1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GTGCGGAGGASOURCE GeneReport for Unigene cluster: Hs.632144 Expression variation in blood from EXPOLDB for SAA1
UniProtKB/Swiss-Prot: SAA_HUMAN, P02735 Tissue specificity : Expressed by the liver; secreted in plasma
Orthologs for SAA1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for SAA1 gene from 4 species
About this table Species with no ortholog for SAA1 ENSEMBL Gene Tree for SAA1 Paralogs for SAA1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for SAA1 gene SAA3P 2 SAA2 2 SAA4 2
SNPs/Variants for SAA1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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UniProtKB/Swiss-Prot: SAA_HUMAN, P02735 Polymorphism : Both SAA1 and SAA2 have a number of alleles. We use here the nomenclature ofPubMed:1546977. The sequence shown is that of 1-alpha
HapMap Linkage Disequilibrium images for SAA1 (up to first 250kb)
Disorders & Mutations for SAA1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 104750 UniProtKB/Swiss-Prot: SAA_HUMAN, P02735
Reactive, secondary amyloidosis is characterized by the extracellular accumulation invarious tissues of the SAA protein. These deposits are highly insoluble and resistant toproteolysis; they disrupt tissue structure and compromise function BOL is from a patient with Waldenstrom macroglobulinemia JL is from a patient with ankylosing spondylitis TH is from a patient with juvenile rheumatoid arthritis
10/23 Novoseek disease relationships for SAA1 gene (see all 23
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
familial mediterranean fever
84.34
11
16118480 (1), 17103173 (1), 16888022 (1), 1679035 (1) (see all 7 )
amyloidosis secondary
81.85
8
16236134 (1), 8268220 (1), 11407685 (1), 14733913 (1) (see all 7 )
amyloidosis
81.34
62
14696796 (5), 12762135 (4), 16736418 (3), 11407685 (3) (see all 31 )
renal amyloidosis
75.35
6
11017802 (2), 15170927 (2), 16118480 (1), 14696796 (1)
response acute phase
70.60
15
10191288 (3), 16236134 (1), 2070782 (1), 9428637 (1) (see all 8 )
inflammation
55.49
24
17103173 (2), 18668591 (2), 10455131 (1), 8091133 (1) (see all 21 )
rheumatoid arthritis
55.26
23
17039310 (2), 7780041 (2), 11156544 (2), 9002005 (1) (see all 15 )
amyloidosis systemic
48.87
2
10036584 (1), 7504491 (1)
brucellosis
43.57
1
14978665 (1)
atherosclerosis
30.16
3
8657133 (1), 9109677 (1), 10608507 (1)
About this table 3 PharmGKB disease relationships for SAA1 gene About this table Human Gene Mutation Database : SAA1 Genetic Association Database: SAA1 Human Genome Epidemiology Navigator: SAA1 (13 documents)
Medical News for SAA1 (Possibly Related Articles in
Doctor's Guide )
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Publications for SAA1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/198 PubMed articles for SAA1 gene (see all 198
): Influence of Serum Amyloid A (SAA1) and SAA2 gene polymorphisms on renal amyloidosis, and on SAA/C-reactive protein values in patients with familial mediterranean fever in the Turkish population. (PubMed id 15170927) 1, 3, 6, 7 Bakkaloglu A....Yilmaz E. (2004) A novel single-nucleotide polymorphism at the 5'-flanking region of SAA1 associated with risk of type AA amyloidosis secondary to rheumatoid arthritis. (PubMed id 11407685) 1, 6, 7 Moriguchi M....Kamatani N. (2001) Analysis of the modifying effects of SAA1, SAA2 and TNF-alpha gene polymorphisms on development of amyloidosis in FMF patients. (PubMed id 14696796) 1, 3, 6 Yilmaz E....Bakkaloglu A. (2003) The contribution of genotypes at the MEFV and SAA1 loci to amyloidosis and disease severity in patients with familial Mediterranean fever. (PubMed id 12687559) 1, 3, 6 Gershoni-Baruch R....Livneh A. (2003) An allele of serum amyloid A1 associated with amyloidosis in both Japanese and Caucasians. (PubMed id 12762135) 1, 3, 6 Yamada T....Kluve-Beckerman B. (2003) Serum amyloid A serum concentrations and genotype do not explain low incidence of amyloidosis in Hyper-IgD syndrome. (PubMed id 16011988) 1, 3, 6 van der Hilst J.C....Simon A. (2005) Genetic risk factors of amyloidogenesis in familial Mediterranean fever. (PubMed id 16118480) 1, 3, 6 Delibas A....Yilmaz E. (2005) A novel polymorphism of human serum amyloid A protein, SAA1 gamma, is characterized by alanines at both residues 52 and 57. (PubMed id 8512321) 1, 3, 4 Baba S.... Shirasawa H. (1993) Human serum amyloid A protein. Complete amino acid sequence of a new variant. (PubMed id 1546977) 1, 3, 4 Beach C.M.... de Beer F.C. (1992) The human acute-phase serum amyloid A gene family: structure, evolution and expression in hepatoma cells. (PubMed id 1656519) 1, 3, 4 Betts J.... Woo P. (1991)
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Genome Databases showing SAA1
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing SAA1
(According to HUGE )
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Specialized Databases showing SAA1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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GeneCards Homepage - Last full update: 1 Jul 2009
Incremental update: 13 Oct 2009