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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

S100PBP Gene

protein-coding   GIFtS: 46
GCID: GC01P033283

S100P Binding Protein

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
S100P Binding Protein1 2
S100PBPR2 3 5
S100P Binding Protein 11 2
S100P-Binding Protein2
S100P-Binding Protein Riken3

External Ids:    HGNC: 257681   Entrez Gene: 647662   Ensembl: ENSG000001164977   OMIM: 6118895   UniProtKB: Q96BU13   

Export aliases for S100PBP gene to outside databases

Previous GC identifers: GC01P032954 GC01P033055 GC01P031399


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for S100PBP Gene:
This gene encodes a protein that was originally identified by its interaction with S100 calcium-binding protein P.
Expression of this protein has been reported to be associated with pancreatic ductal adenocarcinoma.
Alternatively spliced transcript variants have been described. (provided by RefSeq, Jan 2012)

GeneCards Summary for S100PBP Gene: 
S100PBP (S100P binding protein) is a protein-coding gene. Diseases associated with S100PBP include pancreatic ductal adenocarcinoma, and adenocarcinoma. GO annotations related to this gene include calcium-dependent protein binding.




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000001.10  NT_032977.9  NC_018912.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the S100PBP gene promoter:
         E2F-4   E2F-3a   E2F-5   E2F-2   NF-kappaB   E2F   E2F-1   NF-kappaB1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidS100PBP promoter sequence
   Search SABiosciences Chromatin IP Primers for S100PBP

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat S100PBP


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1p35.1   Ensembl cytogenetic band:  1p35.1   HGNC cytogenetic band: 1p35.1

S100PBP Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
S100PBP gene location

GeneLoc information about chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01P033283:  view genomic region     (about GC identifiers)

Start:
33,282,368 bp from pter      End:
33,324,476 bp from pter
Size:
42,109 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: S1PBP_HUMAN, Q96BU1 (See protein sequence)
Recommended Name: S100P-binding protein  
Size: 408 amino acids; 45582 Da
Subunit: Interacts with S100P
Subcellular location: Nucleus. Note=Colocalizes with S100P in the nucleus
Sequence caution: Sequence=BAB14335.1; Type=Erroneous initiation;
Secondary accessions: B3KR04 D3DPQ5 Q5HYH3 Q9H997
Alternative splicing: 2 isoforms:  Q96BU1-1   Q96BU1-2   

Explore the universe of human proteins at neXtProt for S100PBP: NX_Q96BU1

Explore proteomics data for S100PBP at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q96BU1

  • S100PBP Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    S100PBP Protein Expression
    REFSEQ proteins (2 alternative transcripts): 
    NP_001243050.1  NP_073590.2  

    ENSEMBL proteins: 
     ENSP00000434933   ENSP00000362575   ENSP00000362574   ENSP00000431921   ENSP00000431940  
     ENSP00000435856   ENSP00000431432   ENSP00000433456   ENSP00000381296  

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    Cloud-Clone Corp. Proteins for S100PBP 

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IDA15632002

    S100PBP for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    1 InterPro protein domain:
     IPR026097 S100PBP

    Graphical View of Domain Structure for InterPro Entry Q96BU1

    ProtoNet protein and cluster: Q96BU1


    S100PBP for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

         Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0048306calcium-dependent protein binding IPI15632002
         
    S100PBP for ontologies           About GeneDecksing


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    SwitchGear 3'UTR luciferase reporter plasmidS100PBP 3' UTR sequence
    Inhib. RNA
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section




    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for S100PBP

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    1 Interacting protein for S100PBP (ENSP000003625744) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ELAVL1ENSP000003852694STRING: ENSP00000385269
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for S100PBP (S1PBP)

    Search CenterWatch for drugs/clinical trials and news about S100PBP / S1PBP

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for S100PBP gene (3 alternative transcripts): 
    NM_001256121.1  NM_022753.3  NM_001017406.1  

    Unigene Cluster for S100PBP:

    S100P binding protein
    Hs.440880  [show with all ESTs]
    Unigene Representative Sequence: NM_022753
    17 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000530710 ENST00000373476 ENST00000373475(uc001bvz.3 uc001bwc.3 uc001bwd.3)
    ENST00000529027 ENST00000531123 ENST00000356689 ENST00000526230 ENST00000531256
    ENST00000477248 ENST00000482212 ENST00000474103 ENST00000530552 ENST00000525203
    ENST00000524535 ENST00000527692 ENST00000475486 ENST00000398243(uc001bwa.1 uc001bwb.1)

    miRNA
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    8/67 QIAGEN miScript miRNA Assays for microRNAs that regulate S100PBP (see all 67):
    hsa-miR-579 hsa-miR-3146 hsa-miR-200a hsa-miR-219-5p hsa-miR-30d hsa-miR-3916 hsa-miR-30a hsa-miR-508-5p
    SwitchGear 3'UTR luciferase reporter plasmidS100PBP 3' UTR sequence
    Inhib. RNA
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    Additional mRNA sequence: 

    AK022965.1 AK023920.1 AK025811.1 AK090711.1 BC015175.1 BX647667.1 BX647916.1 

    15 DOTS entries:

    DT.110442  DT.100741950  DT.443029  DT.121452402  DT.92427789  DT.100681792  DT.101973133  DT.100764972 
    DT.121452386  DT.97788343  DT.100699868  DT.91730718  DT.92002223  DT.95125151  DT.97812376 

    24/154 AceView cDNA sequences (see all 154):

    AI287900 AA557330 AA495881 CA429172 AV652749 AA258844 BM716712 BX284058 
    AA112172 BQ427456 AI222041 AA256293 CR611064 BM712853 BF939421 AI051620 
    AI024413 AI285328 CA308906 BQ721675 BX647916 AA302355 BC015175 BX641803 

    GeneLoc Exon Structure

    5/9 Alternative Splicing Database (ASD) splice patterns (SP) for S100PBP (see all 9)    About this scheme

    ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b · 6c ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b ^ 13a · 13b · 13c
    SP1:                    -     -           -                                         -     -     -                           
    SP2:                          -           -                                         -     -     -                           
    SP3:                                                                                -     -     -                           
    SP4:                                                                                      -     -                           
    SP5:        -     -     -     -           -                                                                                 


    ECgene alternative splicing isoforms for S100PBP

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    S100PBP expression in normal human tissues (normalized intensities)      S100PBP embryonic expression: see
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TTTTTTCCCT
    S100PBP Expression
    About this image


    S100PBP expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database 
     5/1 selected tissues (see all 1) fully expand
     
     Eye (Sensory Organs)
             nGnG Amacrine Cells Inner Nuclear Layer

    See S100PBP Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for S100PBP

    SOURCE GeneReport for Unigene cluster: Hs.440880

    UniProtKB/Swiss-Prot: S1PBP_HUMAN, Q96BU1
    Tissue specificity: Expressed in brain, spleen, and lung. Not detected in pancreas or liver. In pancreas,
    expressed predominantly in islet cells and to a lesser extent in acinar cells, but not expressed in ductal cells.
    Up-regulated in various pancreatic ductal adenocarcinomas and pancreatic intraepithelial neoplasias. Detected in
    pancreatic ductal adenocarcinoma cells (at protein level). Not detected in non-neoplastic ductal epithelium (at
    protein level)

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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of human and mouse.

    Orthologs for S100PBP gene from 1/6 species (see all 6)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia S100pbp1 , 5 S100P binding protein1, 5 82.86(n)1
    72.73(a)1
      4 (62.96 cM)5
    746481  NM_029036.21  NP_083312.11 
     1291480055 


    ENSEMBL Gene Tree for S100PBP (if available)
    TreeFam Gene Tree for S100PBP (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/827 SNPs in S100PBP are shown (see all 827)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 1 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1821189001,2
    --33285669(+) AGAGTA/GTATTA 2 -- int10--------
    rs1456442731,2
    C--33285687(+) TCAAGC/TAGGGT 2 -- int10--------
    rs1488964091,2
    --33285735(+) CCTACC/TGTTCC 2 -- int10--------
    rs57733871,2
    C--33285745(+) TATGC-/T/TT  
            
    ttttt
    2 -- int1 trp30--------
    rs339318251,2
    C--33285765(+) TTTTT-/T/TT  
            
    GAGAT
    2 -- int11NA 2
    rs771580911,2
    C--33285956(-) CATCCC/TGGCTA 2 -- int11Minor allele frequency- T:0.50NA 2
    rs1879067701,2
    --33285973(+) AACTCC/TTGACC 2 -- int10--------
    rs1910229721,2
    --33285989(+) TGATCC/TACCCA 2 -- int10--------
    rs1831691111,2
    C--33285991(+) ATCCAC/TCCACC 2 -- int10--------
    rs1885868871,2
    --33286109(+) TAACTA/GTGGCC 2 -- int10--------

    HapMap Linkage Disequilibrium report for S100PBP (33282368 - 33324476 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 1 variation for S100PBP:    About this table     
    Variant IDTypeSubtypePubMed ID
    nsv516302CNV Loss19592680

    SABiosciences Cancer Mutation PCR Assays
    SeqTarget long-range PCR primers for resequencing S100PBP
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    OMIM gene information: 611889    OMIM disorders: --

    4 diseases for S100PBP:    About MalaCards
    pancreatic ductal adenocarcinoma    adenocarcinoma    pancreatitis    pancreatic cancer


    S100PBP for disorders           About GeneDecksing


    Export disorders for S100PBP gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for S100PBP gene, integrated from 9 sources (see all 11):
    (articles sorted by number of sources associating them with S100PBP)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Expression of S100P and its novel binding partner S100PBPR in early pancreatic cancer. (PubMed id 15632002)1, 2, 9 Dowen S.E....Lemoine N.R. (2005)
    2. Usefulness of S100P in diagnosis of adenocarcinoma of pancreas on fine-needle aspiration biopsy specimens. (PubMed id 18089492)1, 2 Deng H.... Lin F. (2008)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (2002)
    5. S100P-binding protein, S100PBP, mediates adhesion thro ugh regulation of cathepsin Z in pancreatic cancer cells. (PubMed id 22330678)1 Lines K.E....Crnogorac-Jurcevic T. (2012)
    6. Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass. (PubMed id 23000965)1 Povlsen L.K....Choudhary C. (2012)
    7. A proteome-wide, quantitative survey of in vivo ubiqui tylation sites reveals widespread regulatory roles. (PubMed id 21890473)1 Wagner S.A....Choudhary C. (2011)
    8. Ubiquitin-mediated proteolysis of HuR by heat shock. (PubMed id 19322201)1 Abdelmohsen K....Gorospe M. (2009)
    9. The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005)2 Bechtel S.... Schupp I. (2007)
    10. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (2006)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 64766 HGNC: 25768 AceView: FLJ12903 Ensembl:ENSG00000116497 euGenes: HUgn64766
    ECgene: S100PBP H-InvDB: S100PBP

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for S100PBP Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for S100PBP Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for S100PBP gene:
    Search GeneIP for patents involving S100PBP

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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