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Aliases & Descriptions for S100PBP
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases DKFZp313K2325 2 FLJ12903 1 , 2 OTTHUMP00000004045 2 OTTHUMP00000004046 2 S100PBPR 1 , 2 , 3 , 5
Descriptions S100P binding protein 2 S100P binding protein 1 2 S100P binding protein Riken 3
Search outside databases for aliases for S100PBP genePrevious GC identifer: GC01P032954
Summaries for S100PBP (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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Genomic Location for S100PBP
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the S100PBP gene Entrez Gene cytogenetic band: 1p35.1 Ensembl cytogenetic band: 1p35.1 HGNC cytogenetic band: 1p35.1 S100PBP Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01P033055:
(about GC identifiers )
Start:
33,055,630 bp from pter
End:
33,097,063 bp from pter
Size:
41,434 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000001.9 NT_032977.8 Proteins for S100PBP
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: S1PBP_HUMAN, Q96BU1 (See
protein sequence )Recommended Name: S100P-binding protein Size : 408 amino acids; 45582 Da
Subunit : Interacts with S100P
Subcellular location : Nucleus. Note=Colocalizes with S100P in the nucleus
Secondary accessions : B3KR04 Q5HYH3 Q9H997Alternative splicing : 2 isoforms : Q96BU1-1 Q96BU1-2
REFSEQ proteins (2 alternative transcripts):
NP_001017406.1 NP_073590.2 ENSEMBL proteins: ENSP00000349117 ENSP00000381296 ENSP00000362575 ENSP00000362574 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 1 Gene Ontology (GO) cellular component term (links to tree view) :
About this table Antibodies for S100PBP: Assays for S100PBP:
Protein
Domains/ Families for S100PBP(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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ProtoNet protein and cluster: Q96BU1
Gene Function for S100PBP
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_022753 Applied Biosystems Silencer ® siRNAs for S100PBP Sigma-Aldrich siRNA for S100PBP Sigma-Aldrich shRNA for S100PBP Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001017406                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001017406                                  untagged cDNA clones in CMV expression vector (see all 4 ): BC015175  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_022753 1 Gene Ontology (GO) molecular function term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0048306 calcium-dependent protein binding
IPI 15632002
About this table
Pathways & Interactions for S100PBP
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Interacting protein for S100PBP (ENSP00000362575 3 ) via UniProtKB, MINT, and/or STRING About this table
Drugs & Compounds for S100PBP (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for S100PBP
Transcripts for S100PBP(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
OriGene , Expression Assays from Applied Biosystems )About This Section
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_022753 Sigma-Aldrich siRNA for S100PBP Sigma-Aldrich shRNA for S100PBP Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001017406 NM_022753
REFSEQ mRNAs for S100PBP gene (2 alternative transcripts): NM_001017406.1 NM_022753.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001017406 NM_022753
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001017406                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001017406                                  untagged cDNA clones in CMV expression vector (see all 4 ): BC015175  
Additional cDNA sequence: AK022965.1 AK023920.1 AK025811.1 AK090711.1 BC015175.1 BX647667.1 BX647916.1 CR611064.1 CR626594.1
18 DOTS entries : DT.110442 DT.100741950 DT.121452402 DT.443029 DT.100764972 DT.92427789 DT.40298961 DT.100681792 DT.101973133 DT.121452341 DT.121452386 DT.97788343 DT.100699868 DT.40293572 DT.95125151 DT.91730718 DT.92002223 DT.97812376
24/154 AceView cDNA sequences (see all 154
):AV652749 CA429172 BQ721675 BX647916 AI285328 AI216340 CR626594 BM712853 CR611064 BC015175 BF939421 AA256202 AI287900 AA557330 BX641803 AA361244 AA302355 AA424280 AA258844 AA256454 CA308906 BX284058 BM716712 AI051620
highest scoring ESTs for S100PBP :AI807668 AL042503 AA022470 AA023003 AA112172 AA232097 AA255911 AA256032 AA256293 AA256326
Unigene Cluster for S100PBP: S100P binding protein Hs.440880 [show with all ESTs ] Unigene Representative Sequence: BX647916 GeneLoc Exon Structure 5/9 Alternative Splicing Database (ASD) splice patterns (SP) for S100PBP (see all 9
) ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b · 6c ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b ^ 13a · 13b · 13c SP1 :       -   -     -               -   -   -           SP2 :         -     -               -   -   -           SP3 :                           -   -   -           SP4 :                             -   -           SP5 :   -   -   -   -     -                            
About this scheme ECgene alternative splicing isoforms for S100PBP 4 Ensembl transcripts including schematic representations : ENST00000356689
ENST00000398243
ENST00000373476
ENST00000373475
Expression for S100PBP
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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S100PBP expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for S100PBP 1 / 2 / 3
6 probe-sets matching S100PBP gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TTTTTTCCCTSOURCE GeneReport for Unigene cluster: Hs.440880 UniProtKB/Swiss-Prot: S1PBP_HUMAN, Q96BU1 Tissue specificity : Expressed in brain, spleen, and lung. Not detected in pancreas or liver. Inpancreas, expressed predominantly in islet cells and to a lesser extent in acinar cells, but notexpressed in ductal cells. Up-regulated in various pancreatic ductal adenocarcinomas andpancreatic intraepithelial neoplasias. Detected in pancreatic ductal adenocarcinoma cells (atprotein level). Not detected in non-neoplastic ductal epithelium (at protein level)
Orthologs for S100PBP
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for S100PBP gene from 4 species
About this table Species with no ortholog for S100PBP ENSEMBL Gene Tree for S100PBP Paralogs for S100PBP (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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SNPs/Variants for S100PBP (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for S100PBP (up to first 250kb)
Disorders & Mutations for S100PBP
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 611889
Medical News for S100PBP (Possibly Related Articles in
Doctor's Guide )
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Publications for S100PBP (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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6 PubMed articles for S100PBP gene :
Search for S100PBP
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing S100PBP
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing S100PBP
(According to HUGE )
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Specialized Databases showing S100PBP (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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