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S100P Gene

protein-coding GIFtS: 56

GC04P006812

S100 calcium binding protein P
(Previous name: S100 calcium-binding protein P )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
About This Section

Aliases
MIG9 ^²
OTTHUMP00000115574 ^²
S100E ^³

Descriptions
S100 calcium binding protein P ^²
S100 calcium-binding protein P ^¹, ², ³
migration-inducing gene 9 ^²

External Ids
HGNC: 10504¹
Entrez Gene: 6286²
UniProtKB: P25815³
Ensembl: ENSG00000163993⁷

Search outside databases for aliases for S100P gene

Previous GC identifers: GC04M006590 GC04P006816 GC04P006687 GC04P006759

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for S100P:

The protein encoded by this gene is a member of the S100 family of proteins containing 2 EF-hand

calcium-binding motifs. S100 proteins are localized in the cytoplasm and/or nucleus of a wide

range of cells, and involved in the regulation of a number of cellular processes such as cell

cycle progression and differentiation. S100 genes include at least 13 members which are located as

a cluster on chromosome 1q21; however, this gene is located at 4p16. This protein, in addition to

binding Ca2+, also binds Zn2+ and Mg2+. This protein may play a role in the etiology of prostate

cancer. [provided by RefSeq]

Gene Wiki entry for S100P

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the S100P gene

Entrez Gene cytogenetic band: 4p16 Ensembl cytogenetic band: 4p16.1 HGNC cytogenetic band: 4p16

S100P Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 4 GeneLoc Exon Structure

GeneLoc location for GC04P006812: (about GC identifiers)

Start:	6,746,467 bp from pter
End:	6,749,798 bp from pter
Size:	3,332 bases
Orientation:	plus strand

RefSeq DNA sequence:

NC_000004.10 NT_006051.17

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: S100P_HUMAN, P25815 (See protein sequence)

Recommended Name: Protein S100-P

Size: 95 amino acids; 10400 Da

Subunit: Homodimer. Interacts with S100PBP and S100Z

Subcellular location: Nucleus. Cytoplasm. Note=Colocalizes with S100PBP in the nucleus

Miscellaneous: This protein binds two calcium ions

PDB structure from and Proteopedia :

1J55 (3D)

1OZO (3D)

REFSEQ proteins: NP_005971.1

ENSEMBL proteins:

ENSP00000296370

Human Recombinant Proteins

	Browse Drug Discovery Central at Invitrogen for human recombinant proteins
	Browse Purified and Recombinant Proteins at Millipore
	Browse Human Recombinant Proteins at Sigma-Aldrich
	Browse R&D Systems for human recombinant proteins
	Browse recombinant and purified proteins available from Enzo Life Sciences
	Recombinant Proteins from Abcam (S100P)
	Human Recombinant Proteins from Abnova (S100P)

OriGene Purified Recombinant Human Protein: S100P

2 Gene Ontology (GO) cellular component terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005634	nucleus	IDA	15632002
GO:0005737	cytoplasm	TAS	15632002

About this table

Antibodies for S100P:

	Invitrogen Antibodies for S100P
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Sigma-Aldrich Antibodies for S100P
	R&D Systems Antibodies for S100P
	Antibodies from Abcam (S100P), each with their Abpromise^SM
	Monoclonal and Polyclonal Antibodies from Abnova (S100P)
	Novus Biologicals Antibodies for S100P

Assays for S100P:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

Graphical View of Domain Structure for InterPro Entry P25815

ProtoNet protein and cluster: P25815

1 Blocks protein family: IPB001751 Calcium-binding protein

UniProtKB/Swiss-Prot: S100P_HUMAN, P25815

Similarity: Belongs to the S-100 family

Similarity: Contains 2 EF-hand domains

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (S100P)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (S100P)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005980

Applied Biosystems Silencer® siRNAs for S100P

Sigma-Aldrich siRNA for S100P

Sigma-Aldrich shRNA for S100P

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Invitrogen Clones for S100P
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_005980
Myc/DDK tagged cDNA clone in CMV expression vector: NM_005980
untagged cDNA clone in CMV expression vector: NM_005980

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_005980

Genatlas biochemistry entry for S100P:

S100 calcium binding protein P

3 Gene Ontology (GO) molecular function terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0000287	magnesium ion binding	TAS	15632002
GO:0005509	calcium ion binding	TAS	1633809
GO:0048306	calcium-dependent protein binding	IPI	15632002

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Gene Network Central^TM Interacting Genes and Proteins Network for S100P

5 Interacting proteins for S100P (P25815^{1, 2}) via UniProtKB, MINT, and/or STRING
Interactant Interaction Details
GeneCard External ID(s)
AGER Q15109¹ EBI-743700, EBI-1646426
MYH9 P35579¹ EBI-743700, EBI-350338
RAGE Q9UQ07¹ EBI-743700, EBI-1388900
S100A1 P23297¹ EBI-743700, EBI-743686
-- Q5T7Y6² MINT-66375
About this table
1 Gene Ontology (GO) biological process term (links to tree view):
GO ID Qualified GO term Evidence PubMed IDs
GO:0043542 endothelial cell migration IMP 15313892
About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for S100P

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (S100P)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (S100P)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005980

Sigma-Aldrich siRNA for S100P

Sigma-Aldrich shRNA for S100P

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_005980

REFSEQ mRNAs for S100P gene:

NM_005980.2

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_005980

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005980
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_005980
                                 untagged cDNA clone in CMV expression vector: NM_005980

Additional cDNA sequence:

AY423724.1 BC006819.1 BT007289.1 X65614.1

5 DOTS entries:

DT.100033798 DT.117002 DT.91859610 DT.121276401 DT.97859416

24/179 AceView cDNA sequences (see all 179 ):

AA369104 AA369141 BM765018 BM766535 AI433932 AI126103 BM756238 BM762261

BM756243 AI814221 BM818024 BM850792 AA308062 AA587763 BM854679 BM765090

AI815174 AI148603 BM829138 BM748812 BM850623 BM782257 BE536069 NM_005980

highest scoring ESTs for S100P:

AA131149 AA039888 AA040009 AA053016 AA053504 AA126381 AA130897 AA131104 AA131160 AA136673

Unigene Cluster for S100P:

S100 calcium binding protein P

Hs.2962 [show with all ESTs]

Unigene Representative Sequence: BG571732

GeneLoc Exon Structure

1 Ensembl transcript including schematic representation:

ENST00000296370

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

S100P expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for S100P

¹ / ² / ³

3 probe-sets matching S100P gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
34319_at²^{, 3}	U95-A	1	1.00	1.00	1.00	1.00	AA131149	1.00	1.00	1.00	1
204351_at²^{, 3}	U133-A	1	1.00	1.00	--	--	NM_005980	0.60	1.00	0.82	1
204351_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

GeneDecks S100P for binary patterns associated with the probe-sets selected above

About GeneDecksing

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Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: TACCTCTGAT

SOURCE GeneReport for Unigene cluster: Hs.2962
Expression variation in blood from EXPOLDB for S100P
UniProtKB/Swiss-Prot: S100P_HUMAN, P25815
Tissue specificity: Up-regulated in various pancreatic ductal adenocarcinomas and pancreatic
intraepithelial neoplasias

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for S100P gene from 2 species

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
dog (Canis familiaris)	S100P¹	--	S100 calcium binding protein P	81.56(n) 81.91(a)	610295 XM_847763.1 XP_852856.1
chimpanzee (Pan troglodytes)	S100P¹	--	S100 calcium binding protein P	98.6(n) 98.95(a)	742845 XM_001156309.1 XP_001156309.1

About this table Species with no ortholog for S100P

ENSEMBL Gene Tree for S100P

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for S100P gene

S100A12² S100A8² S100A9²

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/42 NCBI SNPs in S100P are shown (see all 42 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 53)

AB	SNP ID	Valid	Chr 4 pos	Sequence	Recs	AA Chg	Type	More	Recs	Allele freq	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--				--
	rs13103266^1,2	F,H	6750104(+)	`AGCCAC/TTCATT`	1	--	ng3¹		4		EU EA WA	420
	rs11733989^1,2	C,F,H	6749607(+)	`TTCATC/AGTGTT`	1	I/I	syn¹		8		EU EA WA	828
	rs11737783^1,2	C,F,H	6749565(+)	`GACCTG/AGACGC`	1	L/L	syn¹ ese³		5		EU EA WA NA	436
--	rs11734898^1,2	C	6749568(+)	`CTGGAC/TGCCAA`	1	D/D	syn¹ ese³		0	--	--	--	--
	rs3822263^1,2	A,C,F,H	6748574(-)	`ATGTCA/GCAATA`	1	--	int¹		12		EA NA EU WA	1054
	rs4689034^1,2	A,C,F,H	6748067(+)	`TGAGAT/CTTACA`	1	--	int¹		8		EU EA WA	838
	rs3822262^1,2	A,C,F,H	6748667(-)	`TGTGCA/CTGAAG`	1	--	int¹		7		NA EU EA WA	558
	rs3822260^1,2	A,C,F,H	6748723(-)	`GGAAAG/AAAACA`	1	--	int¹		7		EU EA WA NA	554
	rs3822265^1,2	A,C,F	6748455(-)	`GGCCAG/CAAGGC`	1	--	int¹		3		NA	132
--	rs3822261^1,2	A,C,F	6748696(-)	`AAACAT/GATCAT`	1	--	int¹		3		NA	140

About this table

HapMap Linkage Disequilibrium images for S100P (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 600614

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
About This Section

10/40 PubMed articles for S100P gene (see all 40 ):

Expression of S100P and its novel binding partner S100PBPR in early pancreatic cancer. (PubMed id 15632002)^{3, 4} Dowen S.E....Lemoine N.R. (2005)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{3, 4} Gerhard D.S....Malek J. (2004)
The crystal structure at 2A resolution of the Ca2+ -binding protein S100P. (PubMed id 12507480)^{3, 4} Zhang H.... Rao Z. (2003)
Isolation of a YAC clone covering a cluster of nine S100 genes on human chromosome 1q21: rationale for a new nomenclature of the S100 calcium-binding protein family. (PubMed id 7759097)^{2, 3} Schafer B.W....Heizmann C.W. (1995)
Six S100 genes are clustered on human chromosome 1q21: identification of two genes coding for the two previously unreported calcium-binding proteins S100D and S100E. (PubMed id 8341667)^{2, 3} Engelkamp D.... Heizmann C.W. (1993)
S100P, a novel Ca(2+)-binding protein from human placenta. cDNA cloning, recombinant protein expression and Ca2+ binding properties. (PubMed id 1633809)^{3, 4} Becker T.... Weber K. (1992)
Purification and characterization of a new member of the S-100 protein family from human placenta. (PubMed id 1540168)^{3, 4} Emoto Y.... Hidaka H. (1992)
Characterization of the tissue-specific expression of the s100P gene which encodes an EF-hand Ca2+-binding protein. (PubMed id 14672411)^{1, 3} Jin G....Mao Y. (2003)
Conformational and thermodynamic properties of peptide binding to the human S100P protein. (PubMed id 12021435)^{1, 3} Gribenko A.V....Makhatadze G.I. (2002)
Expression of the calcium-binding protein S100P is regulated by bone morphogenetic protein in pancreatic duct epithelial cell lines. (PubMed id 19018761)³ Hamada S....Shimosegawa T. (2009)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 6286	HGNC: 10504	AceView: S100P	Ensembl:ENSG00000163993	euGenes: HUgn6286
ECgene: S100P	H-InvDB: S100P

(According to HUGE)
About This Section

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
ATLAS Chromosomes in Cancer entry for S100P	Genetics and Cytogenetics in Oncology and Haematology

Licensable Technologies for S100P
(Available from WIS Yeda, Salk, Tufts)

About This Section

(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section

Products for S100P:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for S100P-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for S100P		Antibodies for S100P
	Explore super-pooled esiRNAs		Browse proteins at Sigma-Aldrich
	Lentivirus-delivered shRNAs for S100P		Browse small molecules at Sigma-Aldrich
	"Your Favorite Gene" Pathways		feedback

	Antibodies		Primer Pairs
	Cell Culture Products		ELISAs
	Flow Cytometry Kits		Protease Activity Assays & Reagents
	Cell Selection/Detection Kits & Reagents		ELISA/Assay Development Kits & Reagents
	Multiplex/Array Assay Kits & Reagents		ELISpot Kits & Development Modules
	Recombinant & Natural Proteins

	Recombinant Proteins (S100P)
	Antibodies (S100P)
	Chimera RNAi (S100P)
	Custom Service for Mouse Mab
	Custom Service for Rabbit Pab from Full-length Protein

Search for Antibodies & Assays

	Recombinant Proteins (S100P)
	Antibodies (S100P)

	Tagged/untagged cDNA clones
	Validated SYBR primer pairs
	Purified proteins from HEK293T cells
	Western blot validated antibodies
	shRNA in GFP-retroviral vector

Search Tocris compounds for S100P

Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies

Antibodies for S100P

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S100P Gene

protein-coding GIFtS: 56

Aliases &
Descriptions
for S100P

Summaries
for S100P

Genomic Location
for S100P

Proteins
for S100P

Protein Domains/
Families
for S100P

Gene Function
for S100P

Pathways & Interactions
for S100P

Drugs & Compounds
for S100P

Transcripts
for S100P

Expression
for S100P

Orthologs
for S100P

Paralogs
for S100P

SNPs/Variants
for S100P

Disorders & Mutations
for S100P

Medical News
for S100P

Publications
for S100P

Search for S100P

Genome Databases showing S100P

Other Databases showing S100P

Specialized Databases showing S100P

Licensable Technologies
for S100P

Services
for S100P

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

S100P Gene

protein-coding GIFtS: 56

Aliases & Descriptionsfor S100P

Summariesfor S100P

Genomic Locationfor S100P

Proteinsfor S100P

Protein Domains/Familiesfor S100P

Gene Functionfor S100P

Pathways & Interactionsfor S100P

Drugs & Compoundsfor S100P

Transcriptsfor S100P

Expression for S100P

Orthologsfor S100P

Paralogsfor S100P

SNPs/Variantsfor S100P

Disorders & Mutationsfor S100P

Medical Newsfor S100P

Publicationsfor S100P

Search for S100P

Genome Databases showing S100P

Other Databases showing S100P

Specialized Databases showing S100P

Licensable Technologiesfor S100P

Servicesfor S100P

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for S100P

Summaries
for S100P

Genomic Location
for S100P

Proteins
for S100P

Protein Domains/
Families
for S100P

Gene Function
for S100P

Pathways & Interactions
for S100P

Drugs & Compounds
for S100P

Transcripts
for S100P

Expression
for S100P

Orthologs
for S100P

Paralogs
for S100P

SNPs/Variants
for S100P

Disorders & Mutations
for S100P

Medical News
for S100P

Publications
for S100P

Licensable Technologies
for S100P

Services
for S100P