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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

S100P Gene

protein-coding   GIFtS: 59
GCID: GC04P006696

S100 calcium binding protein P

(Previous name: S100 calcium-binding protein P )
 Explore 20 diseases affiliated with
S100P via
MalaCards
our new
 Human Malady Compendium 
Biological research products
for S100P    

Aliases
for S100P gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section
This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 3

Aliases
S100 Calcium Binding Protein P1 2     MIG92 3
S100 Calcium-Binding Protein P1 2 3     Protein S100-P2
Migration-Inducing Gene 9 Protein2 3     S100E3
Protein S100-E2 3     

External Ids:    HGNC: 105041   Entrez Gene: 62862   Ensembl: ENSG000001639937   OMIM: 6006145   UniProtKB: P258153   
ORGUL members:         
NONCODE:n339830    

Export aliases for S100P gene to outside databases

Previous GC identifers: GC04M006590 GC04P006816 GC04P006687 GC04P006759 GC04P006812 GC04P006695 GC04P006628


Summaries
for S100P gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
Entrez Gene summary for S100P:
The protein encoded by this gene is a member of the S100 family of proteins containing 2 EF-hand calcium-binding
motifs. S100 proteins are localized in the cytoplasm and/or nucleus of a wide range of cells, and involved in the
regulation of a number of cellular processes such as cell cycle progression and differentiation. S100 genes include at
least 13 members which are located as a cluster on chromosome 1q21; however, this gene is located at 4p16. This
protein, in addition to binding Ca2+, also binds Zn2+ and Mg2+. This protein may play a role in the etiology of
prostate cancer. (provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: S100P_HUMAN, P25815
Function: May stimulate cell proliferation in an autocrine manner via activation of the receptor for activated
glycation end products (RAGE)

Gene Wiki entry for S100P


Genomic Views
for S100P gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000004.11  NC_018915.1  NT_006051.18  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the S100P gene promoter:
         AREB6   NF-kappaB   NF-kappaB1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): S100P promoter sequence
   Search SABiosciences Chromatin IP Primers for S100P

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat S100P


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4p16   Ensembl cytogenetic band:  4p16.1   HGNC cytogenetic band: 4p16

S100P Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
S100P gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04P006696:  view genomic region     (about GC identifiers)

Start:
 6,694,796 bp from pter      End:
 6,698,897 bp from pter
Size:
 4,102 bases      Orientation:
 plus strand

Proteins
for S100P gene

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section
UniProtKB/Swiss-Prot: S100P_HUMAN, P25815 (See protein sequence)
Recommended Name: Protein S100-P  
Size: 95 amino acids; 10400 Da
Subunit: Homodimer and heterodimer with S100A1. Interacts with S100PBP and S100Z. Interacts with CACYBP in a
calcium-dependent manner. Dimeric form binds to and may activate EZR/Ezrin by unmasking its F-actin binding sites
Subcellular location: Nucleus. Cytoplasm. Note=Colocalizes with S100PBP in the nucleus
Miscellaneous: This protein binds two calcium ions
Sequence caution: Sequence=AAS00487.1; Type=Miscellaneous discrepancy; Note=Sequencing error in Met-1 codon;
2 PDB 3D structures from and Proteopedia for S100P:
1J55 (3D)        1OZO (3D)    
Secondary accessions: Q5J7W2

Explore the universe of human proteins at neXtProt for S100P: NX_P25815

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_P25815

    • S100P Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_005971.1  
    ENSEMBL proteins: 
     ENSP00000296370  

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    Novus Biologicals S100P Lysates
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    ProSpec Recombinant Protein for S100P
    Uscn Proteins for S100P

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IDA15632002
    GO:0005737cytoplasm TAS15632002


    S100P for ontologies           About GeneDecksing



    S100P Antibody Products: 
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    Uscn ELISAs and CLIAs for S100P

    Protein Domains /
    Families
    for S100P gene

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    S100P for domains           About GeneDecksing

    4 InterPro domains/families:
     IPR011992 EF-hand-like_dom
     IPR002048 EF_hand_Ca-bd
     IPR013787 S100_Ca-bd_sub
     IPR001751 S100/CaBP-9k_CS

    Graphical View of Domain Structure for InterPro Entry P25815

    ProtoNet protein and cluster: P25815

    1 Blocks protein family: IPB001751 Calcium-binding protein

    UniProtKB/Swiss-Prot: S100P_HUMAN, P25815
    Similarity: Belongs to the S-100 family
    Similarity: Contains 2 EF-hand domains


    Function
    for S100P gene

    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section
    Function Summary:

         UniProtKB/Swiss-Prot: S100P_HUMAN, P25815
    Function: May stimulate cell proliferation in an autocrine manner via activation of the receptor for activated
    glycation end products (RAGE)

         Genatlas biochemistry entry for S100P:
    S100 calcium binding protein P

    miRNA
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    Inhib. RNA
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    Gene Editing
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    Clone
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    Cell Line
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    Search LifeMap BioReagents cell lines for S100P

    In Situ Assay
    Products:       
         		Search Advanced Cell Diagnostics for RNAscope RNA in situ hybridization assays for S100P

    Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000287magnesium ion binding TAS15632002
    GO:0005509calcium ion binding IEA--
    GO:0005515protein binding IPI16189514
    GO:0048306calcium-dependent protein binding IPI15632002


    S100P for ontologies           About GeneDecksing


    2 GenomeRNAi human phenotypes for S100P:
     Elongated cells with protrusio  Increased HPV18 LCR reporter a 


    Pathways & Interactions
    for S100P gene

    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Ca, cAMP and Lipid Signaling
    		Ca, cAMP and Lipid Signaling1.00

    Pathway sources
    See GeneCards unified pathways
    Show all pathways


    1 Cell Signaling Technology (CST) Pathway for S100P
        Ca, cAMP and Lipid Signaling



    S100P for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for S100P

    STRING Interaction Network Preview (showing 5 interactants - click image to see 13)

    5/16 Interacting proteins for S100P (P258151, 2, 3 ENSP000002963704) via UniProtKB, MINT, STRING, and/or I2D (see all 16)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    S100A1P232971, 3, ENSP000002921694EBI-743700,EBI-743686 I2D: score=4 STRING: ENSP00000292169
    AGERQ151091, 3, ENSP000003642174EBI-743700,EBI-3959557 I2D: score=3 STRING: ENSP00000364217
    EZRP153113, ENSP000003389344I2D: score=2 STRING: ENSP00000338934
    MOKQ9UQ073, ENSP000003553044I2D: score=1 STRING: ENSP00000355304
    S100A2P290343, ENSP000003576974I2D: score=1 STRING: ENSP00000357697
    About this table

    Gene Ontology (GO): 2 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0010033response to organic substance IEP17486081
    GO:0043542endothelial cell migration IMP15313892


    S100P for ontologies           About GeneDecksing



    Drugs & Compounds
    for S100P gene

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for S100P

    1 HMDB Compound for S100P    About this table
    CompoundSynonyms CAS #PubMed Ids
    CalciumCa (see all 2)7440-70-2--

    1 DrugBank Compound for S100P    About this table
    CompoundSynonyms CAS #TypeActionsPubMed Ids
    Cromoglicic acidAcide Cromoglicique [INN-French] (see all 7)16110-51-3targetantagonist17179482

    Search CenterWatch for drugs/clinical trials and news about S100P 

    Transcripts
    for S100P gene

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section
    REFSEQ mRNAs for S100P gene: 
    NM_005980.2  

    Unigene Cluster for S100P:

    S100 calcium binding protein P
    Hs.2962  [show with all ESTs]
    Unigene Representative Sequence: BG571732
    2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000296370(uc003gjl.3) ENST00000513778

    miRNA
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    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
    Products:             		Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for S100P
    OriGene shRNA RFP: S100P
    OriGene siRNA: S100P
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat S100P
    Clone
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    Primer
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    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse / rat S100P
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat S100P
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat S100P

    Additional cDNA sequence: 

    AY423724.1 BC006819.1 BT007289.1 X65614.1 

    5 DOTS entries:

    DT.100033798  DT.117002  DT.91859610  DT.121276401  DT.97859416 

    24/179 AceView cDNA sequences (see all 179):

    AA369104 AA369141 AA039888 AJ706215 BM854679 NM_005980 BM756382 BE536069 
    AI023329 AI803595 BM765090 BM762261 BM783029 BM748812 AF539739 CB138690 
    BF003007 BM850689 BM856101 AI433932 CB114748 BM829138 CB138736 BG620870 

    GeneLoc Exon Structure


    Expression
    for S100P gene

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    S100P expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: TACCTCTGAT

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)
    About this image

    S100P expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    Stem Cell Differentiation: 4 LifeMap Cells 
    NameCategory
    Syncytiotrophoblast-like cells (Generation of syncyt...)
    HyStem+TGF?3+GDF5-induced 4D20.8 cells (HyStem+TGF?3+GDF5 in...)Bone, Cartilage
    HyStem+BMP4-induced 4D20.8 cells (Chondrogenic inducti...)Bone, Cartilage
    TGF?3+BMP7-induced chondrocytes (Chondrogenic HyStem+...)
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See S100P Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for S100P

    SOURCE GeneReport for Unigene cluster: Hs.2962

    UniProtKB/Swiss-Prot: S100P_HUMAN, P25815
    Tissue specificity: Detected in all of the tissues except brain, testis and small intestine, expression level is higher
    in placenta, heart, lung, skeletal muscle, spleen and leukocyte. Up-regulated in various pancreatic ductal
    adenocarcinomas and pancreatic intraepithelial neoplasias

        SABiosciences Custom PCR Arrays for S100P
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    In Situ
    Assay Products:     
         		Search Advanced Cell Diagnostics for RNAscope RNA in situ hybridization assays for S100P

    Orthologs
    for S100P gene

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section
    		   --

    ENSEMBL Gene Tree for S100P (if available)
    TreeFam Gene Tree for S100P (if available) 

    Paralogs
    for S100P gene

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for S100P gene
    S100A112  S100A62  S100A12  S100A122  S100A82  S100A42  S100B2  S100A32  
    S100A102  S100Z2  S100A22  S100A52  S100A92  
    18/20 SIMAP similar genes for S100P using alignment to 1 protein entry:     S100P_HUMAN(see all similar genes):
    S100A1    S100A9    S100B    S100A4    S100Z    S100A16
    S100A6    S100G    S100A10    S100A11    S100A12    FLG2
    RPTN    S100A13    TCHH    S100A5    S100A8    S100A7A

    S100P for paralogs           About GeneDecksing



    Genomic Variants
    for S100P gene

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section
    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing S100P
    DNA2.0 Custom Variant and Variant Library Synthesis for S100P

    Disorders / Diseases
    for S100P gene

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    S100P for disorders           About GeneDecksing

    OMIM gene information: 600614    OMIM disorders: --

    20 diseases for S100P:    About MalaCards
    prostate cancer    non-small cell lung carcinoma    prostatitis    pancreatic ductal adenocarcinoma
    prostate cancer, progression of    lung carcinoma    lung adenocarcinoma    cervical carcinoma
    adenocarcinoma    hepatocellular carcinoma    cervicitis    pancreatitis
    colon cancer    ovarian cancer    carcinoma    pancreatic cancer
    cholangiocarcinoma    lung cancer    ischemia    adenoma


    Export disorders for S100P gene to outside databases

    Publications
    for S100P gene

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for S100P gene, integrated from 9 sources (see all 67):
    (articles sorted by number of sources associating them with S100P)    		    Utopia: connect your pdf to the dynamic
    world of online information

    1. Characterization of the tissue-specific expression of the s100P gene which encodes an EF-hand Ca2+-binding protein. (PubMed id 14672411)1, 2, 9 Jin G....Mao Y. (2003)
    2. Expression of S100P and its novel binding partner S100PBPR in early pancreatic cancer. (PubMed id 15632002)1, 2 Dowen S.E....Lemoine N.R. (2005)
    3. NMR structure of the Apo-S100P protein. (PubMed id 15213440)1, 2 Lee Y.C....Luxon B.A. (2004)
    4. S100P stimulates cell proliferation and survival via receptor for activated glycation end products (RAGE). (PubMed id 14617629)1, 2 Arumugam T....Logsdon C.D. (2004)
    5. Heterodimeric interaction and interfaces of S100A1 an d S100P. (PubMed id 15171681)1, 2 Wang G....Barraclough R. (2004)
    6. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    7. Ca2+-dependent binding and activation of dormant ezrin by dimeric S100P. (PubMed id 12808036)1, 2 Koltzscher M....Gerke V. (2003)
    8. The crystal structure at 2A resolution of the Ca2+ -binding protein S100P. (PubMed id 12507480)1, 2 Zhang H.... Rao Z. (2003)
    9. Isolation of a YAC clone covering a cluster of nine S100 genes on human chromosome 1q21: rationale for a new nomenclature of the S100 calcium-binding protein family. (PubMed id 7759097)1, 3 Schafer B.W....Heizmann C.W. (1995)
    10. Six S100 genes are clustered on human chromosome 1q21: identification of two genes coding for the two previously unreported calcium-binding proteins S100D and S100E. (PubMed id 8341667)1, 3 Engelkamp D.... Heizmann C.W. (1993)

    External Searches for S100P gene

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  
      Query String
    		PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    Genome Databases showing S100P gene

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 6286 HGNC: 10504 AceView: S100P Ensembl:ENSG00000163993 euGenes: HUgn6286
    ECgene: S100P H-InvDB: S100P

    Other Databases showing S100P gene

    (According to HUGE)
    About This Section
    		   --

    Specialized Databases showing S100P gene

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for S100P Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for S100P Genetics and Cytogenetics in Oncology and Haematology

    Intellectual Property
    for S100P gene

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    		Patent Information for S100P gene:
    Search GeneIP for patents involving S100P

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    Products
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    In Situ Hybridization Assays from
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    About This Section

     
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