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S100B Gene

protein-coding   GIFtS: 70
GCID: GC21M048018

S100 Calcium Binding Protein B

(Previous names: S100 calcium binding protein, beta (neural))
  See S100B-related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, 15RNAdb, and/or 11Nature:405,311-319 and CroW21)
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Aliases
S100 Calcium Binding Protein B1 2     S100-B2
S-100 Calcium-Binding Protein, Beta Chain2 11     S100beta2
S-100 Protein Subunit Beta2 3     Protein S100-B2
S100 Calcium Binding Protein, Beta (Neural)1     S100 Calcium-Binding Protein, Beta (Neural)2
NEF2     S-100 Protein Beta Chain3
S1002     S100 Calcium-Binding Protein B3

External Ids:    HGNC: 105001   Entrez Gene: 62852   Ensembl: ENSG000001603077   OMIM: 1769905   UniProtKB: P042713   

Export aliases for S100B gene to outside databases

Previous GC identifers: GC21M044525 GC21M046875 GC21M046874 GC21M046842 GC21M033398


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for S100B Gene:
The protein encoded by this gene is a member of the S100 family of proteins containing 2 EF-hand calcium-binding
motifs. S100 proteins are localized in the cytoplasm and/or nucleus of a wide range of cells, and involved in the
regulation of a number of cellular processes such as cell cycle progression and differentiation. S100 genes
include at least 13 members which are located as a cluster on chromosome 1q21; however, this gene is located at
21q22.3. This protein may function in Neurite extension, proliferation of melanoma cells, stimulation of Ca2+
fluxes, inhibition of PKC-mediated phosphorylation, astrocytosis and axonal proliferation, and inhibition of
microtubule assembly. Chromosomal rearrangements and altered expression of this gene have been implicated in
several neurological, neoplastic, and other types of diseases, including Alzheimer's disease, Down's syndrome,
epilepsy, amyotrophic lateral sclerosis, melanoma, and type I diabetes. (provided by RefSeq, Jul 2008)

GeneCards Summary for S100B Gene:
S100B (S100 calcium binding protein B) is a protein-coding gene. Diseases associated with S100B include granular cell tumor, and subependymal glioma. GO annotations related to this gene include identical protein binding and calcium ion binding. An important paralog of this gene is S100A11.

UniProtKB/Swiss-Prot: S100B_HUMAN, P04271
Function: Weakly binds calcium but binds zinc very tightly-distinct binding sites with different affinities exist
for both ions on each monomer. Physiological concentrations of potassium ion antagonize the binding of both
divalent cations, especially affecting high-affinity calcium-binding sites. Binds to and initiates the activation
of STK38 by releasing autoinhibitory intramolecular interactions within the kinase. Interaction with AGER after
myocardial infarction may play a role in myocyte apoptosis by activating ERK1/2 and p53/TP53 signaling. Could
assist ATAD3A cytoplasmic processing, preventing aggregation and favoring mitochondrial localization. May mediate
calcium-dependent regulation on many physiological processes by interacting with other proteins, such as
TPR-containing proteins, and modulating their activity

Gene Wiki entry for S100B Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics, Whole Chromsome Sequence According to Nature (Cited Here with Permission):405,311-319 and CroW21)
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RefSeq DNA sequence at NCBI GenBank:
NC_000021.8  NC_018932.2  NT_011512.12  
Regulatory elements:
   Regulatory transcription factor binding sites in the S100B gene promoter:
         STAT1   AP-1   AP-2alpha isoform 3   AP-2alpha isoform 2   PPAR-gamma1   AP-2alpha isoform 4   PPAR-gamma2   AP-2alpha   AP-2alphaA   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidS100B promoter sequence

   Search Chromatin IP Primers for S100B

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat S100B


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 21q22.3   Ensembl cytogenetic band:  21q22.3   HGNC cytogenetic band: 21q22.3
Nature(405: 311-319) cytogenetic band:   21q22.3
S100B Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
S100B gene location
GeneLoc information about chromosome 21         GeneLoc Exon Structure

(about GC identifiers)
GC21M048018:   GeneLoc Nature:405,311-319
Start:
48,018,531 bp from pter       33,524,582 bp from centromere
End:
48,025,121 bp from pter 33,525,899 bp from centromere
Size:
6,591 bases 1,318 bases
Orientation:
minus strand minus strand

Whole chromosome sequencing:
cDNA sequence: M59488
genomic clones: PP9H11


(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: S100B_HUMAN, P04271 (See protein sequence)
Recommended Name: Protein S100-B  
Size: 92 amino acids; 10713 Da
Subunit: Dimer of either two alpha chains, or two beta chains, or one alpha and one beta chain. The S100B dimer
binds two molecules of STK38. Interacts with CACYBP in a calcium-dependent manner. Interacts with ATAD3A; this
interaction probably occurs in the cytosol prior to ATAD3A mitochondrial targeting. Interacts with S100A6. The
S100B dimer interacts with two molecules of CAPZA1. Interacts with AGER. Interacts with PPP5C (via TPR repeats);
the interaction is calcium-dependent and modulates PPP5C activity
Miscellaneous: In addition to metal-ion binding, this protein is involved with the regulation of protein
phosphorylation in brain tissue
Selected PDB 3D structures from and Proteopedia for S100B (see all 9):
1MQ1 (3D)        1UWO (3D)        2H61 (3D)        2M49 (3D)        2PRU (3D)        3CZT (3D)    
Secondary accessions: D3DSN6

Explore the universe of human proteins at neXtProt for S100B: NX_P04271

Explore proteomics data for S100B at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See S100B Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_006263.1  
    ENSEMBL proteins: 
     ENSP00000291700   ENSP00000356038   ENSP00000380769  
    Reactome Protein details: P04271

    S100B Human Recombinant Protein Products:

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    S100B Assay Products:

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    Cloud-Clone Corp. ELISAs for S100B
    Cloud-Clone Corp. CLIAs for S100B
    Search eBioscience for ELISAs for S100B 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    EFHAND: EF-hand domain containing
    S100: S100 calcium binding proteins

    Selected InterPro protein domains (see all 6):
     IPR011992 EF-hand-dom_pair
     IPR002048 EF_hand_dom
     IPR028481 S100-B
     IPR013787 S100_Ca-bd_sub
     IPR018247 EF_Hand_1_Ca_BS

    Graphical View of Domain Structure for InterPro Entry P04271

    ProtoNet protein and cluster: P04271

    1 Blocks protein domain: IPB001751 Calcium-binding protein

    UniProtKB/Swiss-Prot: S100B_HUMAN, P04271
    Similarity: Belongs to the S-101 family
    Similarity: Contains 2 EF-hand domains


    Find genes that share domains with S100B           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: S100B_HUMAN, P04271
    Function: Weakly binds calcium but binds zinc very tightly-distinct binding sites with different affinities exist
    for both ions on each monomer. Physiological concentrations of potassium ion antagonize the binding of both
    divalent cations, especially affecting high-affinity calcium-binding sites. Binds to and initiates the activation
    of STK38 by releasing autoinhibitory intramolecular interactions within the kinase. Interaction with AGER after
    myocardial infarction may play a role in myocyte apoptosis by activating ERK1/2 and p53/TP53 signaling. Could
    assist ATAD3A cytoplasmic processing, preventing aggregation and favoring mitochondrial localization. May mediate
    calcium-dependent regulation on many physiological processes by interacting with other proteins, such as
    TPR-containing proteins, and modulating their activity

         Genatlas biochemistry entry for S100B:
    S100 calcium binding protein,beta polypeptide,neuronal,probably including locus control region
    LCR-S100B,stimulating GUCY2D at micromolar concentration of Ca2+ for retinal specific activity

         Gene Ontology (GO): Selected molecular function terms (see all 10):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005102receptor binding ----
    GO:0005509calcium ion binding NAS9519411
    GO:0005515protein binding IPI10913138
    GO:0008270zinc ion binding ISS--
    GO:0042802identical protein binding IPI10913138
         
    Find genes that share ontologies with S100B           About GenesLikeMe


    Phenotypes:
         3 MGI mutant phenotypes (inferred from 2 alleles(MGI details for S100b):
     behavior/neurological  integument  normal 

    Find genes that share phenotypes with S100B           About GenesLikeMe

    Animal Models:
         MGI mouse knock-outs for S100B: S100btm1Ito S100btm1Daoh

       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for S100B
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       genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for S100B
       genOway customized Knockin model: humanization, point mutation, expression monitoring, etc. for S100B

    miRNA
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    hsa-mir-29a-3p (MIRT003735), hsa-mir-29b-3p (MIRT003736)

    Block miRNA regulation of human, mouse, rat S100B using miScript Target Protectors
    5 qRT-PCR Assays for microRNAs that regulate S100B:
    hsa-miR-330-3p hsa-miR-516a-3p hsa-miR-516b* hsa-miR-551b* hsa-miR-583
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat S100B

    Gene Editing
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    GenScript: all cDNA clones in your preferred vector: S100B (NM_006272)
    Sino Biological Human cDNA Clone for S100B
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    Addgene plasmids for S100B 

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    S100B_HUMAN, P04271: Cytoplasm. Nucleus
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus5
    extracellular4
    cytoskeleton3
    cytosol3
    endoplasmic reticulum1
    plasma membrane1

    Gene Ontology (GO): Selected cellular component terms (see all 8):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0001726ruffle IDA10913138
    GO:0005576extracellular region TAS--
    GO:0005615extracellular space IEA--
    GO:0005634nucleus IDA--
    GO:0005737cytoplasm ISS--

    Find genes that share ontologies with S100B           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    SuperPaths for S100B About   (see all 9)  
    See pathways by source

    SuperPathContained pathways About
    1Toll Like Receptor 7/8 (TLR7/8) Cascade
    Toll Like Receptor 9 (TLR9) Cascade0.93
    MyD88 dependent cascade initiated on endosome0.69
    TRAF6 mediated induction of NFkB and MAP kinases upon TLR7/8 or 9 activation0.93
    MyD88-independent cascade0.69
    Toll Like Receptor 7/8 (TLR7/8) Cascade0.69
    Toll Like Receptor 3 (TLR3) Cascade0.69
    2Cytosolic sensors of pathogen-associated DNA
    RIP-mediated NFkB activation via ZBP10.81
    TAK1 activates NFkB by phosphorylation and activation of IKKs complex0.52
    ZBP1(DAI) mediated induction of type I IFNs0.81
    Cytosolic sensors of pathogen-associated DNA0.38
    TRAF6 mediated NF-kB activation0.55
    DEx/H-box helicases activate type I IFN and inflammatory cytokines production0.00
    3PI-3K cascade
    Signaling by ERBB40.66
    4Signaling by GPCR
    Signal Transduction0.58
    5RIG-I/MDA5 mediated induction of IFN-alpha/beta pathways
    RIG-I/MDA5 mediated induction of IFN-alpha/beta pathways0.47


    Find genes that share SuperPaths with S100B           About GenesLikeMe

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways


    2 Cell Signaling Technology (CST) Pathways for S100B
        Ca, cAMP and Lipid Signaling
    Neuroscience


    Selected Reactome Pathways for S100B (see all 6)
        DEx/H-box helicases activate type I IFN and inflammatory cytokines production
    Advanced glycosylation endproduct receptor signaling
    RIP-mediated NFkB activation via ZBP1
    TAK1 activates NFkB by phosphorylation and activation of IKKs complex
    TRAF6 mediated NF-kB activation


        Pathway & Disease-focused RT2 Profiler PCR Arrays including S100B: 
              Parkinson's Disease in human mouse rat
              Neurogenesis in human mouse rat
              Apoptosis 384HT in human mouse rat
              Inflammatory Response & Autoimmunity 384HT in human mouse rat
              Stem Cells in human mouse rat

    Interactions:

        GeneGlobe Interaction Network for S100B

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    Selected Interacting proteins for S100B (P042711, 2, 3 ENSP000002917004) via UniProtKB, MINT, STRING, and/or I2D (see all 48)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    AGERQ151091, 2, 3, ENSP000003642174EBI-458391,EBI-1646426 MINT-5224202 MINT-5224259 MINT-5224222 MINT-5224235 I2D: score=2 STRING: ENSP00000364217
    ENSG00000206320Q151091, 2, 3EBI-458391,EBI-1646426 MINT-5224202 MINT-5224259 MINT-5224222 MINT-5224235 I2D: score=2 
    ENSG00000229058Q151091, 2, 3EBI-458391,EBI-1646426 MINT-5224202 MINT-5224259 MINT-5224222 MINT-5224235 I2D: score=2 
    ENSG00000230514Q151091, 2, 3EBI-458391,EBI-1646426 MINT-5224202 MINT-5224259 MINT-5224222 MINT-5224235 I2D: score=2 
    ENSG00000231268Q151091, 2, 3EBI-458391,EBI-1646426 MINT-5224202 MINT-5224259 MINT-5224222 MINT-5224235 I2D: score=2 
    About this table

    Gene Ontology (GO): Selected biological process terms (see all 18):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007409axonogenesis TAS8202493
    GO:0007417central nervous system development TAS8202493
    GO:0007611learning or memory ISS--
    GO:0007613memory IEA--
    GO:0008283cell proliferation TAS8202493

    Find genes that share ontologies with S100B           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
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      Browse compounds at ApexBio 

    Compounds for S100B available from Tocris Bioscience    About this table
    CompoundAction CAS #
    PLP (139-151)Encephalitogenic myelin proteolipid fragment[122018-58-0]
    ONO 2506Inhibits S100B synthesis; neuroprotective[185517-21-9]
    C3bot (154-182)Neurotrophic fragment of clostridial C3 protein[1246280-79-4]
    MOG (35-55)Encephalitogenic myelin oligodendrocyte glycoprotein fragment[149635-73-4]
    Nogo-66 (1-40)Competitive antagonist for Nogo-66 receptor; promotes neuron regeneration[475221-20-6]

    1 HMDB Compound for S100B    About this table
    CompoundSynonyms CAS #PubMed Ids
    CalciumCa (see all 2)7440-70-2--

    5 DrugBank Compounds for S100B    About this table
    CompoundSynonyms CAS #TypeActionsPubMed Ids
    Calcium-- --target--17624933 17612632 17536784 17515952
    (Z)-2-[2-(4-methylpiperazin-1-yl)benzyl]diazenecarbothioamide-- --target--10592235
    2-[(5-hex-1-yn-1-ylfuran-2-yl)carbonyl]-N-methylhydrazinecarbothioamide-- --target--10592235
    N-Formylmethionine-- --target--10592235
    Olopatadine-- 113806-05-6targetother/unknown11944917

    Selected Novoseek inferred chemical compound relationships for S100B gene (see all 96)    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    s 100 64 35 9870671 (6), 8878020 (5), 11169510 (2), 16338157 (2) (see all 9)
    mucicarmine 62.6 3 11858401 (1), 15239680 (1), 10199475 (1)
    reticulin 57 5 1653908 (1), 11858401 (1), 2354404 (1), 15597767 (1) (see all 5)
    hematoxylin 56.9 19 15725798 (3), 7512798 (1), 16949932 (1), 19094127 (1) (see all 16)
    paraffin 52.7 19 7524376 (1), 7668412 (1), 10199466 (1), 8050903 (1) (see all 17)
    b 723 34.8 6 9808124 (1), 12481020 (1), 1693028 (1), 7678320 (1) (see all 6)
    orcein 29.3 1 16796160 (1)
    glycogen 24.3 3 8214396 (1), 8088719 (1), 15547779 (1)
    calcium 24.1 187 8688416 (6), 9428666 (4), 8805590 (3), 15882069 (3) (see all 99)
    tyrosine 19.1 56 18073204 (4), 15681409 (4), 9705913 (3), 9218412 (2) (see all 33)



    Find genes that share compounds with S100B           About GenesLikeMe



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for S100B gene: 
    NM_006272.2  

    Unigene Cluster for S100B:

    S100 calcium binding protein B
    Hs.422181  [show with all ESTs]
    Unigene Representative Sequence: BC041935
    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000291700(uc002zju.1) ENST00000367071(uc002zjv.1) ENST00000397648

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    Browse SwitchGear 3'UTR luciferase reporter plasmids
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    Additional mRNA sequence: 

    BC001766.1 BC041935.1 CR542123.1 

    12 DOTS entries:

    DT.215194  DT.100758003  DT.95157592  DT.121136780  DT.121136796  DT.95120732  DT.100758001  DT.95157596 
    DT.100758004  DT.100758005  DT.121136789  DT.95157594 

    Selected AceView cDNA sequences (see all 265):

    AI339135 BI756271 AA363992 BE465410 AW206399 BI491621 AA808065 BI494752 
    BM694813 AI391682 BU731627 CR542123 AA831469 BI496877 AW206771 BM695249 
    BE856467 BI856702 AW137786 CB054226 BG708272 BE385545 BM016397 W94784 

    GeneLoc Exon Structure

    Selected Alternative Splicing Database (ASD) splice patterns (SP) for S100B (see all 6)    About this scheme

    ExUns: 1a · 1b · 1c · 1d · 1e ^ 2a · 2b · 2c ^ 3 ^ 4a · 4b · 4c · 4d · 4e
    SP1:                                -     -                                             
    SP2:                                -                                                   
    SP3:                                -     -           -                                 
    SP4:                          -     -     -           -                                 
    SP5:                                -                 -                                 


    ECgene alternative splicing isoforms for S100B

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    S100B expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GCCGTGTAGA
    S100B Expression
    About this image


    S100B expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 17) fully expand
     
     Peripheral Nervous System (Nervous System)    fully expand to see all 9 entries
             Non-myelinating Schwann Cells Peripheral Nerve Domain
             Schwann cells
             Schwann-like cells
     
     Schwann Cells (Nervous System)    fully expand to see all 6 entries
             Schwann cells
             Schwann-like cells
     
     Brain (Nervous System)    fully expand to see all 23 entries
             Adult Endothelial Cells Blood Brain Barrier
             Thalamus
             Caudal astrospheres
     
     Bone (Muscoskeletal System)    fully expand to see all 4 entries
             Chondrocytes Zeugopod Epiphyseal End
             Zeugopod Growth Plate
     
     Neural Tube (Nervous System)    fully expand to see all 2 entries
             Diencephalon
    S100B Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    S100B Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.422181

    UniProtKB/Swiss-Prot: S100B_HUMAN, P04271
    Tissue specificity: Although predominant among the water-soluble brain proteins, S100 is also found in a variety
    of other tissues

        Pathway & Disease-focused RT2 Profiler PCR Arrays including S100B: 
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              Stem Cells in human mouse rat

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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for S100B gene from Selected species (see all 8)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia S100b1 , 5 S100 protein, beta polypeptide, neural1, 5 85.51(n)1
    98.91(a)1
      10 (38.76 cM)5
    202031  NM_009115.31  NP_033141.11 
     762538535 
    chicken
    (Gallus gallus)
    Aves S100B1 S100 calcium binding protein B 83.33(n)
    84.78(a)
      424038  XM_001233034.3  XP_001233035.1 
    zebrafish
    (Danio rerio)
    Actinopterygii wufq18b102 wufq18b10 73.83(n)   336344  BI427905.1 


    ENSEMBL Gene Tree for S100B (if available)
    TreeFam Gene Tree for S100B (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for S100B gene
    S100A112  S100A62  S100A12  S100A122  S100A42  S100A32  S100A102  S100Z2  
    S100P2  S100A22  S100A52  S100A92  
    Selected SIMAP similar genes for S100B using alignment to 2 protein entries:     S100B_HUMAN (see all proteins) (see all similar genes):
    S100A1    S100A5    S100A6    S100A16    S100Z    S100A4
    S100A12    HRNR    S100A9    S100P    S100A11    S100A2
    RPTN    S100A8    S100A3    FLG2    S100A10    S100A13

    Find genes that share paralogs with S100B           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for S100B (see all 203)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 21 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1169235171,2
    C,F--48018073(+) GGCACG/CTGACT 1 -- ds50011Minor allele frequency- C:0.03NA 120
    rs1503093821,2
    --48018089(+) GGACCA/GTTGGC 1 -- ds50010--------
    rs1824464531,2
    --48018104(+) CCCCTC/TCCTGG 1 -- ds50010--------
    rs99815821,2
    C,F--48018207(+) GCAGAA/CGGGAA 1 -- ds50015Minor allele frequency- C:0.18WA CSA NA 244
    rs99805841,2
    C,F,H--48018216(+) AAGCCG/ACGTTT 1 -- ds50016Minor allele frequency- A:0.21NS WA CSA 338
    rs1143420941,2
    C,F--48018247(+) ATGGCG/ACTGGA 1 -- ds50011Minor allele frequency- A:0.05WA 118
    rs1130686531,2
    C,F--48018412(+) CACGCG/ACCACC 1 -- ds50011Minor allele frequency- A:0.50NA 2
    rs1490678131,2
    --48018425(+) GCCAGA/GCTACT 1 -- ds50010--------
    rs622257201,2
    F--48018492(+) TCCTGG/ACCTTG 1 -- ds50011Minor allele frequency- A:0.50NA 2
    rs99836981,2
    C,F,H--48018543(+) TTGAAC/TGCAGG 1 -- ut31 ese322Minor allele frequency- T:0.13NS EA NA WA CSA 1774

    HapMap Linkage Disequilibrium report for S100B (48018531 - 48025121 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 7 variations for S100B:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv528495CNV Loss19592680
    nsv914148CNV Loss21882294
    nsv527542CNV Loss19592680
    esv34393CNV Gain17911159
    nsv470910CNV Gain18288195
    nsv528947CNV Gain19592680
    dgv1375e1CNV Complex17122850

    Human Gene Mutation Database (HGMD): S100B
    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing S100B
    DNA2.0 Custom Variant and Variant Library Synthesis for S100B

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

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    OMIM gene information: 176990    OMIM disorders: --

    Selected diseases for S100B (see all 101):    
    About MalaCards
    granular cell tumor    subependymal glioma    chordoid glioma    ossifying fibromyxoid tumor
    meningeal melanocytoma    gemistocytic astrocytoma    pituicytoma    hypoganglionosis
    congenital granular cell tumor    epithelioid malignant peripheral nerve sheath tumor    malignant peripheral nerve sheath tumor    sweat gland carcinoma
    gliofibroma    extraosseous ewing's sarcoma    myxopapillary ependymoma    intraneural perineurioma
    ganglioglioma    askin's tumor    rosai-dorfman disease    chondroid chordoma

    6 diseases from the University of Copenhagen DISEASES database for S100B:
    Cerebrovascular accident     Melanoma     Down syndrome     Schizophrenia
    Alzheimer's disease     Labyrinthine dysfunction

    Find genes that share disorders with S100B           About GenesLikeMe

    Selected Novoseek inferred disease relationships for S100B gene (see all 96)    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    myoepithelioma 81.9 5 1694334 (1), 8380682 (1), 1718079 (1), 8986967 (1) (see all 5)
    melanoma 80 442 8791271 (5), 15234232 (5), 10570381 (5), 19104452 (5) (see all 99)
    tumors 77.2 652 12759535 (4), 18454690 (4), 1380226 (4), 8986967 (4) (see all 99)
    granular cell tumor 76.2 9 7817938 (1), 8878020 (1), 12579997 (1), 15590438 (1) (see all 8)
    perineurioma 75.2 3 9221216 (1), 12459629 (1), 18434767 (1)
    mpnst 75.2 14 14508395 (3), 11580072 (1), 10584703 (1), 17910355 (1) (see all 9)
    malignant peripheral nerve sheath tumors 74.8 8 11145248 (1), 11732802 (1), 17119986 (1), 18480004 (1) (see all 7)
    schwannoma 73.6 32 15487453 (2), 18480004 (2), 1710946 (2), 1708642 (2) (see all 22)
    sarcoma clear cell 73.3 3 14666625 (1), 11211309 (1), 2004337 (1)
    immunodeficiency 72.1 241 9811718 (3), 1571013 (2), 12370346 (2), 9153233 (2) (see all 99)

    Genetic Association Database (GAD): S100B
    Human Genome Epidemiology (HuGE) Navigator: S100B (10 documents)

    Export disorders for S100B gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for S100B gene, integrated from 10 sources (see all 1814):
    (articles sorted by number of sources associating them with S100B)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Cloning and expression of the human S100 beta gene. (PubMed id 2394738)1, 2, 3 Allore R.J.... Marks A. (J. Biol. Chem. 1990)
    2. Demonstration of heterodimer formation between S100B and S100A6 in the yeast two-hybrid system and human melanoma. (PubMed id 9925766)1, 2, 9 Yang Q.... Marks A. (Exp. Cell Res. 1999)
    3. The calcium-dependent interaction between S100B and the mitochondrial AAA ATPase ATAD3A and the role of this complex in the cytoplasmic processing of ATAD3A. (PubMed id 20351179)1, 2, 9 Gilquin B....Baudier J. (Mol. Cell. Biol. 2010)
    4. The calcium binding protein, S100B, is increased in the amniotic fluid of women with intra-amniotic infection/inflammation and preterm labor with intact or ruptured membranes. (PubMed id 17624933)1, 7, 9 Friel L.A....Espinoza J. (J Perinat Med 2007)
    5. The combination of a genome-wide association study of lymphocyte count and analysis of gene expression data reveals novel asthma candidate genes. (PubMed id 22286170)1, 4 Cusanovich D.A....Gilad Y. (Hum. Mol. Genet. 2012)
    6. Comprehensive copy number variant (CNV) analysis of neuronal pathways genes in psychiatric disorders identifies rare variants within patients. (PubMed id 20398908)1, 4 Saus E....Estivill X. (J Psychiatr Res 2010)
    7. Risk variants in the S100B gene predict elevated S100B serum concentrations in healthy individuals. (PubMed id 19330775)1, 4 Hohoff C....Rothermundt M. (Am. J. Med. Genet. B Neuropsychiatr. Genet. 2010)
    8. Association study of astrocyte-derived protein S100B gene polymorphisms with major depressive disorder in Chinese people. (PubMed id 19497163)1, 4 Yang K....Su L.Y. (Can J Psychiatry 2009)
    9. Identification of new putative susceptibility genes for several psychiatric disorders by association analysis of regulatory and non-synonymous SNPs of 306 genes involved in neurotransmission and neurodevelopment. (PubMed id 19086053)1, 4 GratacA^s M....Carracedo A. (Am. J. Med. Genet. B Neuropsychiatr. Genet. 2009)
    10. No association of the rs9722 C &gt;T in the S100B gene and susceptibility to major depression in a Chinese population. (PubMed id 18939940)1, 4 Yang K....Su L.Y. (Genet. Test. 2008)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 6285 HGNC: 10500 AceView: S100B Ensembl:ENSG00000160307 euGenes: HUgn6285
    ECgene: S100B H-InvDB: S100B

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
    About This Section

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    NameDescription
    PharmGKB entry for S100B Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for S100B Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for S100B gene:
    Search GeneIP for patents involving S100B

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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