S100A9 Gene
protein-coding GIFtS : 60
GC01P151596
S100 calcium binding protein A9 (Previous names: S100 calcium-binding protein A9 (calgranulin B), S100 calcium binding protein A9 (calgranulin B) )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbols: CAGB, CFAG )
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Aliases & Descriptions for S100A9
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases 60B8AG 1 , 2 CAGB 2 , 3 , 5 CFAG 2 , 3 , 5 CGLB 1 , 2 Calgranulin-B 3 L1AG 2 LIAG 1 , 2 MAC387 1 , 2 MIF 1 , 2 MRP-14 3 MRP14 1 , 2 , 3 NIF 1 , 2 OTTHUMP00000015331 2 P14 1 , 2 , 3
Descriptions Calprotectin L1H subunit 3 Leukocyte L1 complex heavy chain 3 Migration inhibitory factor-related protein 14 3 S100 calcium binding protein A9 2 S100 calcium binding protein A9 (calgranulin B) 1 S100 calcium-binding protein A9 2 , 3 S100 calcium-binding protein A9 (calgranulin B) 1 , 2 calgranulin B 2
Search outside databases for aliases for S100A9 genePrevious GC identifers: GC01P151146 GC01P149113 GC01P150105 GC01P150546 GC01P150143
Summaries for S100A9 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for S100A9 : The protein encoded by this gene is a member of the S100 family of proteins containing 2 EF-handcalcium-binding motifs. S100 proteins are localized in the cytoplasm and/or nucleus of a widerange of cells, and involved in the regulation of a number of cellular processes such as cellcycle progression and differentiation. S100 genes include at least 13 members which are located asa cluster on chromosome 1q21. This protein may function in the inhibition of casein kinase andaltered expression of this protein is associated with the disease cystic fibrosis. [provided byRefSeq] UniProtKB/Swiss-Prot: S10A9_HUMAN, P06702 Function : Expressed by macrophages in acutely inflammated tissues and in chronic inflammations.Seem to be an inhibitor of protein kinases. Also expressed in epithelial cells constitutively orinduced during dermatoses. May interact with components of the intermediate filaments in monocytesand epithelial cells
Gene Wiki entry for S100A9
Genomic Location for S100A9
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the S100A9 gene Entrez Gene cytogenetic band: 1q21 Ensembl cytogenetic band: 1q21.3 HGNC cytogenetic band: 1q21 S100A9 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01P151596:
(about GC identifiers )
Start:
151,596,954 bp from pter
End:
151,600,127 bp from pter
Size:
3,174 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000001.9 NT_004487.18 Proteins for S100A9
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: S10A9_HUMAN, P06702 (See
protein sequence )Recommended Name: Protein S100-A9 Size : 114 amino acids; 13242 Da
Subunit : Interacts with CEACAM3 in a calcium-dependent manner
Miscellaneous : Has been shown to bind calcium
PDB structure from and Proteopedia : 1IRJ (3D)
 1XK4 (3D)
 
Secondary accessions : Q6FGA1 Q9NYM0 Q9UCJ1
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_002956.1 ENSEMBL proteins: ENSP00000357727 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: S100A9 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for S100A9: Assays for S100A9:
Protein
Domains/ Families for S100A9(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P06702 ProtoNet protein and cluster: P06702
1 Blocks protein family : IPB001751 Calcium-binding protein UniProtKB/Swiss-Prot: S10A9_HUMAN, P06702 Similarity : Belongs to the S-100 familySimilarity : Contains 2 EF-hand domains
Gene Function for S100A9
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002965 Applied Biosystems Silencer ® siRNAs for S100A9 Sigma-Aldrich siRNA for S100A9 Sigma-Aldrich shRNA for S100A9 Explore Sigma-Aldrich super-pooled esiRNAs               OriGene GFP tagged cDNA clone in CMV expression vector: NM_002965                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002965                                  untagged cDNA clone in CMV expression vector: NM_002965  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002965 UniProtKB/Swiss-Prot: S10A9_HUMAN, P06702 Function : Expressed by macrophages in acutely inflammated tissues and in chronic inflammations.Seem to be an inhibitor of protein kinases. Also expressed in epithelial cells constitutively orinduced during dermatoses. May interact with components of the intermediate filaments in monocytesand epithelial cells
Genatlas biochemistry entry for S100A9 :S100 calcium binding protein A9,calgranulin B,epidermal differentiation complex expressed inmonocytes and granulocytes
3 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for S100a9) :3 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for S100A9
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for S100A9 5/48 Interacting proteins for S100A9 (P06702 1 ENSP00000357727 3 ) via UniProtKB, MINT, and/or STRING (see all 48
)About this table 5 Gene Ontology (GO) biological process terms (links to tree view) :
About this table
Drugs & Compounds for S100A9 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for S100A9 10/23 Novoseek chemical compound relationships for S100A9 gene (see all 23
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
scca1
69.15
4
16035113 (2), 16273201 (1), 17638865 (1)
triethylene glycol dimethacrylate
46.55
3
14647409 (1), 12874078 (1)
monosodium urate
40.08
2
12905486 (2)
calcium
28.91
50
10536818 (3), 8053890 (2), 8558004 (2), 8499645 (2) (see all 23 )
arachidonic acid
21.23
8
12553726 (2), 8898915 (1), 17135363 (1), 17429438 (1) (see all 6 )
1,25 dihydroxy vitamin d3
20.92
3
10212853 (1), 2292594 (1), 8499645 (1)
orthophosphate
18.60
1
15905572 (1)
zinc
14.87
6
12167632 (1), 18755861 (1), 12874078 (1), 8645219 (1)
glyceraldehyde 3-phosphate
13.63
4
17722226 (1), 11489294 (1), 15355353 (1)
cytochalasin b
11.55
1
8898915 (1)
About this table 2 PharmGKB drug compound relationships for S100A9 gene About this table
Transcripts for S100A9(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002965 Sigma-Aldrich siRNA for S100A9 Sigma-Aldrich shRNA for S100A9 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_002965
REFSEQ mRNAs for S100A9 gene: NM_002965.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002965
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002965                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002965                                  untagged cDNA clone in CMV expression vector: NM_002965  
Additional cDNA sequence: AF086362.1 AK311882.1 BC047681.2 CR542207.1 CR542224.1 M26311.1 X06233.1
6 DOTS entries : DT.215083 DT.91908747 DT.95259360 DT.92432962 DT.95240936 DT.95259359
24/244 AceView cDNA sequences (see all 244
):AW449213 BU681394 BU540419 BQ072542 BM681155 BQ774304 AJ705888 BI060803 BX644886 BI060870 BQ422337 BM712918 AJ712988 F26504 CR542207 BI060732 BC047681 H49366 BQ933527 AF086362 AJ705905 AJ346834 BI060709 BQ949176
highest scoring ESTs for S100A9 :AA320415 AA320692 AA321204 AA321506 AA581931 AA582314 AA582879 AA583762 AA583821 AA583933
Unigene Cluster for S100A9: S100 calcium binding protein A9 Hs.112405 [show with all ESTs ] Unigene Representative Sequence: BQ927179 GeneLoc Exon Structure 2 Alternative Splicing Database (ASD) splice patterns (SP) for S100A9 ExUns: 1a · 1b ^ 2a · 2b SP1 :   -       SP2 :        
About this scheme ECgene alternative splicing isoforms for S100A9 1 Ensembl transcript including schematic representation : ENST00000368738
Expression for S100A9
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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S100A9 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for S100A9 1 / 2 / 3
3 probe-sets matching S100A9 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GTGGCCACGGSOURCE GeneReport for Unigene cluster: Hs.112405 Expression variation in blood from EXPOLDB for S100A9
Orthologs for S100A9
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for S100A9 gene from 5 species
About this table Species with no ortholog for S100A9 ENSEMBL Gene Tree for S100A9 Paralogs for S100A9 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for S100A9 gene S100A12 2 S100A8 2 S100P 2
SNPs/Variants for S100A9 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for S100A9 (up to first 250kb)
Disorders & Mutations for S100A9
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 123886 10/50 Novoseek disease relationships for S100A9 gene (see all 50
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
inflammation
52.60
31
1524561 (2), 17138858 (2), 1490735 (2), 9549523 (1) (see all 23 )
psoriasis
46.17
7
16792753 (2), 11493312 (1), 12704215 (1), 15740587 (1) (see all 6 )
inflammatory bowel diseases
40.57
2
9759608 (1), 17553524 (1)
cystic fibrosis
36.59
11
7517672 (2), 7762618 (2), 15901828 (1), 2292594 (1) (see all 7 )
spondylarthropathies
33.89
1
12794836 (1)
rheumatoid arthritis
29.96
6
16613612 (1), 12794836 (1), 2292594 (1), 17553524 (1) (see all 6 )
dermatomyositis
29.23
2
2292594 (1), 12937135 (1)
mixed connective tissue disease
26.52
1
2292594 (1)
sclerosis systemic
26.17
1
2292594 (1)
polymyositis
24.95
2
2292594 (1), 12937135 (1)
About this table 1 PharmGKB disease relationship for S100A9 gene About this table
Medical News for S100A9 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for S100A9 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/291 PubMed articles for S100A9 gene (see all 291
): The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414) 3, 4 Gregory S.G.... Bentley D.R. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) The microbial receptor CEACAM3 is linked to the calprotectin complex in granulocytes. (PubMed id 11708798) 3, 4 Streichert T....Bruemmer J. (2001) In vitro antimicrobial activity of the human neutrophil cytosolic S- 100 protein complex, calprotectin, against Capnocytophaga sputigena. (PubMed id 8423249) 3, 4 Miyasaki K.T.... Lehrer R.I. (1993) Microsequences of 145 proteins recorded in the two-dimensional gel protein database of normal human epidermal keratinocytes. (PubMed id 1286667) 3, 4 Rasmussen H.H....Vandekerckhove J. (1992) Ionomycin-regulated phosphorylation of the myeloid calcium-binding protein p14. (PubMed id 2478889) 3, 4 Edgeworth J.... Hogg N. (1989) A protein containing the cystic fibrosis antigen is an inhibitor of protein kinases. (PubMed id 2656677) 3, 4 Murao S.... Huberman E. (1989) Cloning and expression of two human genes encoding calcium-binding proteins that are regulated during myeloid differentiation. (PubMed id 3405210) 3, 4 Lagasse E. and Clerc R.G. (1988) Two calcium-binding proteins in infiltrate macrophages of rheumatoid arthritis. (PubMed id 3313057) 3, 4 Odink K.... Sorg C. (1987) Expression of MRP14 gene is frequently down-regulated in Chinese human esophageal cancer. (PubMed id 15040889) 1, 3 Wang J....Wang M.R. (2004)
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Genome Databases showing S100A9
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing S100A9
(According to HUGE )
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--
Specialized Databases showing S100A9 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for S100A9 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for S100A9:
Search Tocris compounds for S100A9
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Technologies for S100A9
Transcripts for S100A9
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Incremental update: 13 Oct 2009