S100A8 Gene
protein-coding GIFtS : 62
GC01M151629
S100 calcium binding protein A8 (Previous names: S100 calcium-binding protein A8 (calgranulin A), S100 calcium binding protein A8 (calgranulin A) )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbols: CAGA, CFAG )
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Aliases & Descriptions for S100A8
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases 60B8AG 1 , 2 CAGA 2 , 3 , 5 CFAG 2 , 3 , 5 CGLA 1 , 2 CP-10 2 Calgranulin-A 3 L1Ag 2 MA387 2 MIF 2 MRP-8 3 MRP8 1 , 2 , 3 NIF 2 OTTHUMP00000015329 2 OTTHUMP00000015330 2 P8 1 , 2 , 3
Descriptions Calprotectin L1L subunit 3 Cystic fibrosis antigen 2 , 3 Leukocyte L1 complex light chain 3 Migration inhibitory factor-related protein 8 3 S100 calcium binding protein A8 2 S100 calcium binding protein A8 (calgranulin A) 1 S100 calcium-binding protein A8 2 , 3 S100 calcium-binding protein A8 (calgranulin A) 1 , 2 Urinary stone protein band A 3 calgranulin A 2
Search outside databases for aliases for S100A8 genePrevious GC identifers: GC01M151178 GC01M149145 GC01M150137 GC01M150579 GC01M150175
Summaries for S100A8 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for S100A8 : The protein encoded by this gene is a member of the S100 family of proteins containing 2 EF-handcalcium-binding motifs. S100 proteins are localized in the cytoplasm and/or nucleus of a widerange of cells, and involved in the regulation of a number of cellular processes such as cellcycle progression and differentiation. S100 genes include at least 13 members which are located asa cluster on chromosome 1q21. This protein may function in the inhibition of casein kinase and asa cytokine. Altered expression of this protein is associated with the disease cystic fibrosis.[provided by RefSeq] UniProtKB/Swiss-Prot: S10A8_HUMAN, P05109 Function : Expressed by macrophages in chronic inflammations. Also expressed in epithelial cellsconstitutively or induced during dermatoses. May interact with components of the intermediatefilaments in monocytes and epithelial cells
Gene Wiki entry for S100A8 (S100_calcium_binding_protein_A8)
Genomic Location for S100A8
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the S100A8 gene Entrez Gene cytogenetic band: 1q21 Ensembl cytogenetic band: 1q21.3 HGNC cytogenetic band: 1q12-q22 S100A8 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01M151629:
(about GC identifiers )
Start:
151,629,132 bp from pter
End:
151,630,173 bp from pter
Size:
1,042 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000001.9 NT_004487.18 Proteins for S100A8
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: S10A8_HUMAN, P05109 (See
protein sequence )Recommended Name: Protein S100-A8 Size : 93 amino acids; 10835 Da
Subunit : Homodimer
Miscellaneous : Binds two calcium ions per molecule with an affinity similar to that of the S100proteins
PDB structure from and Proteopedia : 1MR8 (3D)
 1XK4 (3D)
 
Secondary accessions : A8K5L3 Q5SY70 Q9UC84 Q9UC92 Q9UCJ0 Q9UCM6
REFSEQ proteins: NP_002955.2 ENSEMBL proteins: ENSP00000357722 ENSP00000357721 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells Antibodies for S100A8: Assays for S100A8:
Protein
Domains/ Families for S100A8(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P05109 ProtoNet protein and cluster: P05109
1 Blocks protein family : IPB001751 Calcium-binding protein UniProtKB/Swiss-Prot: S10A8_HUMAN, P05109 Similarity : Belongs to the S-100 familySimilarity : Contains 2 EF-hand domains
Gene Function for S100A8
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002964 Applied Biosystems Silencer ® siRNAs for S100A8 Sigma-Aldrich siRNA for S100A8 Sigma-Aldrich shRNA for S100A8 Explore Sigma-Aldrich super-pooled esiRNAs               OriGene GFP tagged cDNA clone in CMV expression vector: NM_002964                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002964                                  untagged cDNA clone in CMV expression vector: NM_002964  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002964 UniProtKB/Swiss-Prot: S10A8_HUMAN, P05109 Function : Expressed by macrophages in chronic inflammations. Also expressed in epithelial cellsconstitutively or induced during dermatoses. May interact with components of the intermediatefilaments in monocytes and epithelial cells
Genatlas biochemistry entry for S100A8 :S100 calcium binding protein A8,calgranulin A,epidermal differentiation complex
2 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for S100a8) :2 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for S100A8
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for S100A8 5/57 Interacting proteins for S100A8 (ENSP00000357722 3 P05109 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 57
)About this table 1 Gene Ontology (GO) biological process term (links to tree view) :
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Drugs & Compounds for S100A8 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for S100A8 10/31 Novoseek chemical compound relationships for S100A8 gene (see all 31
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
atpa
53.36
1
12748272 (1)
scca1
44.14
1
17638865 (1)
tyrosine
32.02
117
12752736 (9), 11929545 (5), 12925139 (5), 11777849 (4) (see all 39 )
urea
29.37
8
9746590 (1), 15377296 (1), 19399945 (1), 18334875 (1) (see all 7 )
monosodium urate
20.89
2
12905486 (2)
8-oxo-dg
17.51
8
11989831 (1), 12752735 (1), 19081768 (1), 17127715 (1)
oligonucleotide
12.41
14
15198928 (2), 15280402 (1), 9398887 (1), 11417307 (1) (see all 9 )
crcs
11.90
1
12353842 (1)
flagellin
8.99
3
19399945 (1), 8152375 (1), 10660136 (1)
superoxide
4.68
2
14708622 (2)
About this table 2 PharmGKB drug compound relationships for S100A8 gene About this table
Transcripts for S100A8(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
OriGene , Expression Assays from Applied Biosystems )About This Section
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002964 Sigma-Aldrich siRNA for S100A8 Sigma-Aldrich shRNA for S100A8 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_002964
REFSEQ mRNAs for S100A8 gene: NM_002964.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002964
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002964                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002964                                  untagged cDNA clone in CMV expression vector: NM_002964  
Additional cDNA sequence: AK291328.1 BC005928.2 BT007378.1 CR407674.1 X06234.1 Y00278.1
17 DOTS entries : DT.97864015 DT.91911261 DT.91765796 DT.100877161 DT.95110289 DT.100877152 DT.95351910 DT.100877151 DT.100877153 DT.100877155 DT.91765792 DT.121432976 DT.121432975 DT.91892881 DT.95351901 DT.91738911 DT.95325317
24/431 AceView cDNA sequences (see all 431
):BM955350 AW304434 BM855179 AJ706285 BM955383 BM955359 AW275844 CR407674 CB129405 AI187047 BM955355 AA321357 AA321386 BM955362 AI804862 AI826354 BM955353 F25314 AA321530 BT007378 AJ705422 F33754 T99218 CF530015
highest scoring ESTs for S100A8 :AA321180 AI126134 AV712109 AV712835 AV713378 AV715560 AV735754 AV755464 AV757679 BE185239
Unigene Cluster for S100A8: S100 calcium binding protein A8 Hs.416073 [show with all ESTs ] Unigene Representative Sequence: BG739729 GeneLoc Exon Structure 2 Ensembl transcripts including schematic representations : ENST00000368733
ENST00000368732
Expression for S100A8
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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S100A8 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for S100A8 1 / 2 / 3
3 probe-sets matching S100A8 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TACCTGCAGASOURCE GeneReport for Unigene cluster: Hs.416073 Expression variation in blood from EXPOLDB for S100A8
Orthologs for S100A8
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for S100A8 gene from 5 species
About this table Species with no ortholog for S100A8 ENSEMBL Gene Tree for S100A8 Paralogs for S100A8 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for S100A8 gene S100A12 2 S100P 2 S100A9 2
SNPs/Variants for S100A8 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for S100A8 (up to first 250kb)
Disorders & Mutations for S100A8
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 123885 10/95 Novoseek disease relationships for S100A8 gene (see all 95
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
gastritis
91.38
171
9398887 (5), 17890898 (4), 8586721 (3), 16302986 (3) (see all 99 )
peptic ulcer
89.15
151
10861258 (5), 10823130 (5), 9619383 (4), 9759946 (4) (see all 81 )
duodenal ulcer
88.40
84
10548360 (3), 16543737 (3), 9398887 (3), 9577374 (3) (see all 54 )
gastritis chronic
87.19
47
12640706 (3), 11780331 (3), 10823130 (3), 19405980 (2) (see all 29 )
gastric cancer
83.02
139
14724815 (8), 9659265 (4), 15300891 (3), 10363680 (3) (see all 79 )
gastric ulcer
80.75
41
11158115 (3), 7650174 (2), 11519793 (2), 12645789 (2) (see all 23 )
adenocarcinoma gastric
78.36
38
12752736 (5), 10189841 (4), 9286230 (2), 11427555 (2) (see all 19 )
duodenal ulcer disease
78.12
19
12697114 (2), 11843964 (2), 11158115 (2), 12734242 (1) (see all 9 )
gastritis atrophic
75.27
19
17760724 (3), 12925139 (2), 10364597 (1), 9146793 (1) (see all 12 )
metaplasia
72.06
24
11288377 (3), 9691913 (2), 9517643 (2), 12663641 (2) (see all 18 )
About this table 1 PharmGKB disease relationship for S100A8 gene About this table Human Genome Epidemiology Navigator: S100A8 (2 documents)
Medical News for S100A8 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for S100A8 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/676 PubMed articles for S100A8 gene (see all 676
): Translocation of a small cytosolic calcium-binding protein (MRP-8) to plasma membrane correlates with human neutrophil activation. (PubMed id 1326551) 1, 3, 4 Lemarchand P.... Markert M. (1992) Host-parasite interaction in human onchocerciasis: identification and sequence analysis of a novel human calgranulin. (PubMed id 8619876) 1, 3, 4 Marti T.... Gallin M.Y. (1996) The calcium-binding protein MRP-8 is produced by human pulmonary tumor cells. (PubMed id 2039599) 1, 3, 4 Schaefer T.... Gassen H.G. (1991) The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414) 3, 4 Gregory S.G.... Bentley D.R. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) The structure of human MRP8, a member of the S100 calcium-binding protein family, by MAD phasing at 1.9 A resolution. (PubMed id 10771424) 3, 4 Ishikawa K.... Nishihira J. (2000) Calprotectin-like protein is related to soluble organic matrix in calcium oxalate urinary stone. (PubMed id 7849642) 3, 4 Umekawa T. and Kurita T. (1994) In vitro antimicrobial activity of the human neutrophil cytosolic S- 100 protein complex, calprotectin, against Capnocytophaga sputigena. (PubMed id 8423249) 3, 4 Miyasaki K.T.... Lehrer R.I. (1993) Microsequences of 145 proteins recorded in the two-dimensional gel protein database of normal human epidermal keratinocytes. (PubMed id 1286667) 3, 4 Rasmussen H.H....Vandekerckhove J. (1992) Cloning and expression of two human genes encoding calcium-binding proteins that are regulated during myeloid differentiation. (PubMed id 3405210) 3, 4 Lagasse E. and Clerc R.G. (1988)
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Genome Databases showing S100A8
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing S100A8
(According to HUGE )
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Specialized Databases showing S100A8 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for S100A8 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for S100A8:
Search Tocris compounds for S100A8
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GeneCards Homepage - Last full update: 1 Jul 2009
Incremental update: 13 Oct 2009