Free for academic non-profit institutions. Other users need a Commercial license

Aliases for S100A7L2 Gene

Aliases for S100A7L2 Gene

  • S100 Calcium Binding Protein A7-Like 2 2 3
  • S100 Calcium-Binding Protein A7-Like 2 3 4
  • S100a7b 3 4
  • Protein S100-A7-Like 2 3

External Ids for S100A7L2 Gene

Summaries for S100A7L2 Gene

GeneCards Summary for S100A7L2 Gene

S100A7L2 (S100 Calcium Binding Protein A7-Like 2) is a Protein Coding gene. GO annotations related to this gene include calcium ion binding. An important paralog of this gene is S100A7A.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for S100A7L2 Gene

Genomics for S100A7L2 Gene

Genomic Location for S100A7L2 Gene

Start:
153,436,995 bp from pter
End:
153,440,027 bp from pter
Size:
3,033 bases
Orientation:
Minus strand

Genomic View for S100A7L2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for S100A7L2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for S100A7L2 Gene

Regulatory Elements for S100A7L2 Gene

Proteins for S100A7L2 Gene

  • Protein details for S100A7L2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5SY68-S1A7B_HUMAN
    Recommended name:
    Protein S100-A7-like 2
    Protein Accession:
    Q5SY68
    Secondary Accessions:

    Protein attributes for S100A7L2 Gene

    Size:
    101 amino acids
    Molecular mass:
    11302 Da
    Quaternary structure:
    No Data Available

neXtProt entry for S100A7L2 Gene

Proteomics data for S100A7L2 Gene at MOPED

Post-translational modifications for S100A7L2 Gene

No Post-translational modifications

Other Protein References for S100A7L2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for S100A7L2 Gene

Domains for S100A7L2 Gene

Gene Families for S100A7L2 Gene

HGNC:
  • EFHAND :EF-hand domain containing

Protein Domains for S100A7L2 Gene

UniProtKB/Swiss-Prot:

S1A7B_HUMAN
Domain:
  • Contains 2 EF-hand domains.:
    • Q5SY68
Family:
  • Belongs to the S-100 family.:
    • Q5SY68
genes like me logo Genes that share domains with S100A7L2: view

Function for S100A7L2 Gene

Gene Ontology (GO) - Molecular Function for S100A7L2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005509 calcium ion binding IEA --
genes like me logo Genes that share ontologies with S100A7L2: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for S100A7L2 Gene

Localization for S100A7L2 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for S100A7L2 Gene COMPARTMENTS Subcellular localization image for S100A7L2 gene
Compartment Confidence
cytosol 2
endoplasmic reticulum 1
extracellular 1
mitochondrion 1
nucleus 1

No data available for Gene Ontology (GO) - Cellular Components for S100A7L2 Gene

Pathways for S100A7L2 Gene

SuperPathways for S100A7L2 Gene

No Data Available

Interacting Proteins for S100A7L2 Gene

Gene Ontology (GO) - Biological Process for S100A7L2 Gene

None

No data available for Pathways by source for S100A7L2 Gene

Transcripts for S100A7L2 Gene

mRNA/cDNA for S100A7L2 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for S100A7L2 Gene

No ASD Table

Relevant External Links for S100A7L2 Gene

GeneLoc Exon Structure for
S100A7L2
ECgene alternative splicing isoforms for
S100A7L2

Expression for S100A7L2 Gene

mRNA expression in normal human tissues for S100A7L2 Gene

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for S100A7L2 Gene

SOURCE GeneReport for Unigene cluster for S100A7L2 Gene Hs.647713

genes like me logo Genes that share expressions with S100A7L2: view

Orthologs for S100A7L2 Gene

This gene was present in the common ancestor of mammals.

Orthologs for S100A7L2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia S100A7L2 36
  • 99.7 (n)
  • 99.11 (a)
S100A7L2 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 37
  • 52 (a)
ManyToMany
S100A7 37
  • 50 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 25 (a)
OneToMany
Species with no ortholog for S100A7L2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for S100A7L2 Gene

ENSEMBL:
Gene Tree for S100A7L2 (if available)
TreeFam:
Gene Tree for S100A7L2 (if available)

Paralogs for S100A7L2 Gene

Paralogs for S100A7L2 Gene

Selected SIMAP similar genes for S100A7L2 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with S100A7L2: view

Variants for S100A7L2 Gene

Sequence variations from dbSNP and Humsavar for S100A7L2 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs3006428 -- 153,439,916(+) GCAAA(G/T)AGGCA intron-variant
rs3006429 -- 153,440,396(+) GATCT(C/T)CCCAG upstream-variant-2KB
rs3014830 -- 153,437,166(+) TTATC(C/T)TTATT synonymous-codon, reference
rs3014831 -- 153,438,753(+) GTCAC(A/G)GGGGC intron-variant
rs4845349 -- 153,439,391(+) GGCCA(A/G)GGGCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for S100A7L2 Gene

Variant ID Type Subtype PubMed ID
nsv831603 CNV Gain 17160897
esv33204 CNV Gain 17666407

Relevant External Links for S100A7L2 Gene

HapMap Linkage Disequilibrium report
S100A7L2

Disorders for S100A7L2 Gene

No disorders were found for S100A7L2 Gene.

No data available for UniProtKB/Swiss-Prot for S100A7L2 Gene

Publications for S100A7L2 Gene

  1. Genomic and phylogenetic analysis of the S100A7 (psoriasin) gene duplications within the region of the S100 gene cluster on human chromosome 1q21. (PMID: 12664160) Kulski J.K. … Bellgard M. (J. Mol. Evol. 2003) 3 4
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4

Products for S100A7L2 Gene

  • antibodies-online proteins for S100A7L2
  • antibodies-online antibodies for S100A7L2
  • antibodies-online kits for S100A7L2

Sources for S100A7L2 Gene

Back to Top

Content