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S100A5 Gene

protein-coding GIFtS: 54

GC01M151776

S100 calcium binding protein A5
(Previous name: S100 calcium-binding protein A5 )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbol: S100D)

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
About This Section

Aliases
S100D ^², ³, ⁵

Descriptions
Protein S-100D ^³
S100 calcium binding protein A5 ^²
S100 calcium-binding protein A5 ^¹, ², ³

External Ids
HGNC: 10495¹
Entrez Gene: 6276²
UniProtKB: P33763³
Ensembl: ENSG00000196420⁷

Search outside databases for aliases for S100A5 gene

Previous GC identifers: GC01M151325 GC01M149292 GC01M150336 GC01M150778 GC01M150322

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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EntrezGene summary for S100A5:

The protein encoded by this gene is a member of the S100 family of proteins containing 2 EF-hand

calcium-binding motifs. S100 proteins are localized in the cytoplasm and/or nucleus of a wide

range of cells, and involved in the regulation of a number of cellular processes such as cell

cycle progression and differentiation. S100 genes include at least 13 members which are located as

a cluster on chromosome 1q21. This protein has a Ca2+ affinity 20- to 100-fold higher than the

other S100 proteins studied under identical conditions. This protein also binds Zn2+ and Cu2+, and

Cu2+ strongly which impairs the binding of Ca2+. This protein is expressed in very restricted

regions of the adult brain. [provided by RefSeq]

Gene Wiki entry for S100A5

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the S100A5 gene

Entrez Gene cytogenetic band: 1q21 Ensembl cytogenetic band: 1q21.3 HGNC cytogenetic band: 1q21

S100A5 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure

GeneLoc location for GC01M151776: (about GC identifiers)

Start:	151,776,247 bp from pter
End:	151,780,865 bp from pter
Size:	4,619 bases
Orientation:	minus strand

RefSeq DNA sequence:

NC_000001.9 NT_004487.18

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: S10A5_HUMAN, P33763 (See protein sequence)

Recommended Name: Protein S100-A5

Size: 92 amino acids; 10744 Da

Secondary accessions: Q5RHS3

Post-translational modifications:

View phosphorylation sites using PhosphoSite²

REFSEQ proteins: NP_002953.1

ENSEMBL proteins:

ENSP00000352148 ENSP00000357707 ENSP00000357706

Human Recombinant Proteins

	Browse Drug Discovery Central at Invitrogen for human recombinant proteins
	Browse Purified and Recombinant Proteins at Millipore
	Browse Human Recombinant Proteins at Sigma-Aldrich
	Browse R&D Systems for human recombinant proteins
	Browse recombinant and purified proteins available from Enzo Life Sciences
	Recombinant Proteins from Abcam (S100A5)
	Human Recombinant Proteins from Abnova (S100A5)

OriGene Purified Recombinant Human Protein: S100A5

Antibodies for S100A5:

	Browse Antibodies Central at Invitrogen
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Sigma-Aldrich Antibodies for S100A5
	Browse R&D Systems for Antibodies
	Antibodies from Abcam (S100A5), each with their Abpromise^SM
	Monoclonal and Polyclonal Antibodies from Abnova (S100A5)
	Novus Biologicals Antibodies for S100A5

Assays for S100A5:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

Graphical View of Domain Structure for InterPro Entry P33763

ProtoNet protein and cluster: P33763

1 Blocks protein family: IPB001751 Calcium-binding protein

UniProtKB/Swiss-Prot: S10A5_HUMAN, P33763

Similarity: Belongs to the S-100 family

Similarity: Contains 2 EF-hand domains

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (S100A5)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (S100A5)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002962

Applied Biosystems Silencer® siRNAs for S100A5

Sigma-Aldrich siRNA for S100A5

Sigma-Aldrich shRNA for S100A5

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Browse Clone Ranger at Invitrogen for clones
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_002962
Myc/DDK tagged cDNA clone in CMV expression vector: NM_002962
untagged cDNA clone in CMV expression vector: NM_002962

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_002962

Genatlas biochemistry entry for S100A5:

S100 calcium binding protein A5,epidermal differentiation complex

1 Gene Ontology (GO) molecular function term (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005509	calcium ion binding	IEA	--

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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1 Interacting protein for S100A5 (ENSP00000352148³) via UniProtKB, MINT, and/or STRING

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
HRAS	ENSP00000373382³	STRING (score=.761)

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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
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Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for S100A5

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (S100A5)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (S100A5)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002962

Sigma-Aldrich siRNA for S100A5

Sigma-Aldrich shRNA for S100A5

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_002962

REFSEQ mRNAs for S100A5 gene:

NM_002962.1

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_002962

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002962
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_002962
                                 untagged cDNA clone in CMV expression vector: NM_002962

Additional cDNA sequence:

BC093955.1 BC093957.2 Z18954.1

2 DOTS entries:

DT.306595 DT.92070646

10 AceView cDNA sequences:

NM_002962 Z18954 AA810909 AW090645 BG208555 BG212210 BG207000 BG201757

BG209078 BG200838

highest scoring ESTs for S100A5:

Z18954 BC093955 BC093957 BG200838 NM_002962 AA810909 AW090645 BG201757 BG207000 BG208555

Unigene Cluster for S100A5:

S100 calcium binding protein A5

Hs.2960 [show with all ESTs]

Unigene Representative Sequence: BG200838

GeneLoc Exon Structure

3 Ensembl transcripts including schematic representations:

ENST00000359215 ENST00000368718 ENST00000368717

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
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S100A5 expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for S100A5

¹ / ² / ³

3 probe-sets matching S100A5 gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
34560_at²^{, 3}	U95-A	1	1.00	1.00	1.00	1.00	Z18954	1.00	1.00	1.00	1
207763_at²^{, 3}	U133-A	1	1.00	1.00	--	--	NM_002962	0.60	1.00	0.82	1
207763_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

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Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: --

SOURCE GeneReport for Unigene cluster: Hs.2960
Expression variation in blood from EXPOLDB for S100A5

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
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Orthologs for S100A5 gene from 5 species

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
dog (Canis familiaris)	S100A5¹	--	S100 calcium binding protein A5	88.77(n) 91.3(a)	480142 XM_537267.2 XP_537267.2
chimpanzee (Pan troglodytes)	S100A5¹	--	S100 calcium binding protein A5	99.09(n) 98.18(a)	738170 XM_001138899.1 XP_001138899.1
cow (Bos taurus)	S100A5¹	--	S100 calcium binding protein A5	90.58(n) 95.65(a)	509251 XM_586176.3 XP_586176.3
rat (Rattus norvegicus)	S100a5¹	--	S100 calcium binding protein A5	90.58(n) 94.57(a)	295211 XM_215608.3 XP_215608.3
mouse (Mus musculus)	S100a5^{1, 5}	3 (43.60 cM)⁵	S100 calcium binding protein A5^{1, 5}	90.94(n)¹ 94.57(a)¹	20199¹ NM_011312.2¹ NP_035442.1¹ AF087469⁵ AI327447⁵ (see all 7)

About this table Species with no ortholog for S100A5

ENSEMBL Gene Tree for S100A5

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for S100A5 gene

S100A6² S100A3² S100A1² S100Z² S100A2² S100A4²

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/62 NCBI SNPs in S100A5 are shown (see all 62 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 35)

AB	SNP ID	Valid	Chr 1 pos	Sequence	Recs	AA Chg	Type	More	Recs	Allele freq	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--				--
	rs7529714^1,2	A,C,F,H	151780524(+)	`AGGCAT/CAGCCT`	1	/V	mis¹		4		EU EA WA	406
--	rs1810765^1,2	A,C,F	151781744(+)	`CTCCAT/CGCACC`	1	--	ng3¹		5		EA NA	908
	rs2230870^1,2	C,F,O	151779236(-)	`CAAATA/TTTCGG`	1	Y/F	mis¹		2		MN NA	80
--	rs743687^1,2	C,F	151782149(-)	`TCAGGG/CAGGGC`	1	--	ng3¹		4		NA EA	1733
--	rs7535476^1,2	A,C	151780865(+)	`GTGGGA/CCAAAC`	1	--	ut5¹		0	--	--	--	--
--	rs7530120^1,2	A	151780950(+)	`AGGAGC/TAGAGA`	1	--	ng3¹		0	--	--	--	--
	rs4017737^1,2	C,F,H	151778971(-)	`GAGAAT/CGGGTC`	1	--	int¹		4		EU EA WA	416
--	rs7529817^1,2	A	151780609(+)	`GAAGTG/TGTTGG`	1	--	int¹		0	--	--	--	--
--	rs2988283^1,2	A	151778547(+)	`AAAAAA/TATATA`	1	--	int¹		0	--	--	--	--
--	rs7535274^1,2	A	151780603(+)	`CCATGA/GGAAGT`	1	--	int¹		0	--	--	--	--

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HapMap Linkage Disequilibrium images for S100A5 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
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OMIM: 176991

4 Novoseek disease relationships for S100A5 gene

Disease	Score	Articles	PubMed IDs for Articles with Shared Sentences (# sentences)
anaplastic astrocytoma	59.84	1	9989446 (1)
meningioma	53.16	9	15043715 (5), 15492810 (1), 15542977 (1)
glioblastoma	42.65	1	9989446 (1)
tumors	0.00	4	9989446 (2), 15542977 (1)

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(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
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10/19 PubMed articles for S100A5 gene (see all 19 ):

Six S100 genes are clustered on human chromosome 1q21: identification of two genes coding for the two previously unreported calcium-binding proteins S100D and S100E. (PubMed id 8341667)^{2, 3, 4} Engelkamp D.... Heizmann C.W. (1993)
The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)^{3, 4} Gregory S.G.... Bentley D.R. (2006)
Differential expression of S100 proteins in the developing human hippocampus and temporal cortex. (PubMed id 12645008)^{1, 3} Chan W.Y....Yew D.T. (2003)
Restricted expression of calcium-binding protein S100A5 in human kidney. (PubMed id 11855835)^{1, 3} Teratani T....Nozawa R. (2002)
Development and progression of malignancy in human colon tissues are correlated with expression of specific Ca(2+)-binding S100 proteins. (PubMed id 11510959)^{1, 3} Bronckart Y....Heizman C.W. (2001)
Clustered organization of S100 genes in human and mouse. (PubMed id 9920416)^{1, 3} Ridinger K....Schafer B.W. (1998)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)³ Strausberg R.L....Marra M.A. (2002)
Brain S100A5 is a novel calcium-, zinc-, and copper ion-binding protein of the EF-hand superfamily. (PubMed id 10882717)³ Schafer B.W....Cox J.A. (2000)
The S100 family of EF-hand calcium-binding proteins: functions and pathology. (PubMed id 8701470)³ Schafer B.W. and Heizmann C.W. (1996)
Isolation of a YAC clone covering a cluster of nine S100 genes on human chromosome 1q21: rationale for a new nomenclature of the S100 calcium-binding protein family. (PubMed id 7759097)³ Schafer B.W....Heizmann C.W. (1995)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 6276	HGNC: 10495	AceView: S100A5	Ensembl:ENSG00000196420	euGenes: HUgn6276
ECgene: S100A5	H-InvDB: S100A5

(According to HUGE)
About This Section

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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Licensable Technologies for S100A5
(Available from WIS Yeda, Salk, Tufts)

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(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
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Products for S100A5:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for S100A5-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for S100A5		Antibodies for S100A5
	Explore super-pooled esiRNAs		Browse proteins at Sigma-Aldrich
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S100A5 Gene

protein-coding GIFtS: 54

Aliases &
Descriptions
for S100A5

Summaries
for S100A5

Genomic Location
for S100A5

Proteins
for S100A5

Protein Domains/
Families
for S100A5

Gene Function
for S100A5

Pathways & Interactions
for S100A5

Drugs & Compounds
for S100A5

Transcripts
for S100A5

Expression
for S100A5

Orthologs
for S100A5

Paralogs
for S100A5

SNPs/Variants
for S100A5

Disorders & Mutations
for S100A5

Medical News
for S100A5

Publications
for S100A5

Search for S100A5

Genome Databases showing S100A5

Other Databases showing S100A5

Specialized Databases showing S100A5

Licensable Technologies
for S100A5

Services
for S100A5

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

S100A5 Gene

protein-coding GIFtS: 54

Aliases & Descriptionsfor S100A5

Summariesfor S100A5

Genomic Locationfor S100A5

Proteinsfor S100A5

Protein Domains/Familiesfor S100A5

Gene Functionfor S100A5

Pathways & Interactionsfor S100A5

Drugs & Compoundsfor S100A5

Transcriptsfor S100A5

Expression for S100A5

Orthologsfor S100A5

Paralogsfor S100A5

SNPs/Variantsfor S100A5

Disorders & Mutationsfor S100A5

Medical Newsfor S100A5

Publicationsfor S100A5

Search for S100A5

Genome Databases showing S100A5

Other Databases showing S100A5

Specialized Databases showing S100A5

Licensable Technologiesfor S100A5

Servicesfor S100A5

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for S100A5

Summaries
for S100A5

Genomic Location
for S100A5

Proteins
for S100A5

Protein Domains/
Families
for S100A5

Gene Function
for S100A5

Pathways & Interactions
for S100A5

Drugs & Compounds
for S100A5

Transcripts
for S100A5

Expression
for S100A5

Orthologs
for S100A5

Paralogs
for S100A5

SNPs/Variants
for S100A5

Disorders & Mutations
for S100A5

Medical News
for S100A5

Publications
for S100A5

Licensable Technologies
for S100A5

Services
for S100A5