S100A4 Gene
protein-coding GIFtS : 62
GC01M151783
S100 calcium binding protein A4 (Previous names: S100 calcium-binding protein A4 (calcium protein, calvasculin, metastasin, murine placental homolog), S100 calcium binding protein A4 (calcium protein, calvasculin, metastasin, murine placental homolog) )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbols: MTS1, CAPL )
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Aliases & Descriptions for S100A4
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases 18A2 1 , 2 42A 1 , 2 CAPL 2 , 3 , 5 Calvasculin 3 FSP1 1 , 2 MTS1 2 , 3 Metastasin 3 OTTHUMP00000015467 2 OTTHUMP00000015468 2 OTTHUMP00000015469 2 OTTHUMP00000032895 2 P9KA 1 , 2 PEL98 1 , 2
Descriptions Placental calcium-binding protein 3 Protein Mts1 3 S100 calcium binding protein A4 2 S100 calcium binding protein A4 (calcium protein, calvasculin, metastasin, murine placental homolog) 1 , 2 S100 calcium-binding protein A4 2 , 3 S100 calcium-binding protein A4 (calcium protein, calvasculin, metastasin, murine placental homolog) 1 , 2 fibroblast-specific protein-1 2 malignant transformation suppression 1 2
Search outside databases for aliases for S100A4 genePrevious GC identifers: GC01M151332 GC01M149298 GC01M150343 GC01M150784 GC01M150585 GC01M150330
Summaries for S100A4 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for S100A4 : The protein encoded by this gene is a member of the S100 family of proteins containing 2 EF-handcalcium-binding motifs. S100 proteins are localized in the cytoplasm and/or nucleus of a widerange of cells, and involved in the regulation of a number of cellular processes such as cellcycle progression and differentiation. S100 genes include at least 13 members which are located asa cluster on chromosome 1q21. This protein may function in motility, invasion, and tubulinpolymerization. Chromosomal rearrangements and altered expression of this gene have beenimplicated in tumor metastasis. Multiple alternatively spliced variants, encoding the sameprotein, have been identified. [provided by RefSeq] Gene Wiki entry for S100A4
Genomic Location for S100A4
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the S100A4 gene Entrez Gene cytogenetic band: 1q21 Ensembl cytogenetic band: 1q21.3 HGNC cytogenetic band: 1q12-q22 S100A4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01M151783:
(about GC identifiers )
Start:
151,782,713 bp from pter
End:
151,789,236 bp from pter
Size:
6,524 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000001.9 NT_004487.18 Proteins for S100A4
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: S10A4_HUMAN, P26447 (See
protein sequence )Recommended Name: Protein S100-A4 Size : 101 amino acids; 11729 Da
Subunit : Homodimer. Interacts with PPFIBP1 in a calcium-dependent mode
PDB structures from and Proteopedia : 1M31 (3D)
 2Q91 (3D)
 3C1V (3D)
 3CGA (3D)
 
Secondary accessions : Q6ICP8
REFSEQ proteins (2 alternative transcripts):
NP_002952.1 NP_062427.1 ENSEMBL proteins: ENSP00000346294 ENSP00000357705 ENSP00000357704 ENSP00000357703 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: S100A4 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for S100A4: Assays for S100A4:
Protein
Domains/ Families for S100A4(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P26447 ProtoNet protein and cluster: P26447
1 Blocks protein family : IPB001751 Calcium-binding protein UniProtKB/Swiss-Prot: S10A4_HUMAN, P26447 Similarity : Belongs to the S-100 familySimilarity : Contains 2 EF-hand domains
Gene Function for S100A4
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_019554 Applied Biosystems Silencer ® siRNAs for S100A4 Sigma-Aldrich siRNA for S100A4 Sigma-Aldrich shRNA for S100A4 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_002961                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_002961                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_002961  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002961 Genatlas biochemistry entry for S100A4 :S100 calcium binding protein A4,murine placental homolog,epidermal differentiationcomplex,possessing metastasis-inducing capabilities,involved in the regulation of cell cycleprogression,modulating intercellular adhesion,and invasive and metastatic properties of cancercells
4 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for S100a4) :2 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for S100A4
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for S100A4 5/49 Interacting proteins for S100A4 (ENSP00000346294 3 P26447 2 ) via UniProtKB, MINT, and/or STRING (see all 49
)About this table 1 Gene Ontology (GO) biological process term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0001837 epithelial to mesenchymal transition
TAS 14679171
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Drugs & Compounds for S100A4 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for S100A4 7 Novoseek chemical compound relationships for S100A4 gene
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Transcripts for S100A4(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_019554 Sigma-Aldrich siRNA for S100A4 Sigma-Aldrich shRNA for S100A4 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_002961 NM_019554
REFSEQ mRNAs for S100A4 gene (2 alternative transcripts): NM_002961.2 NM_019554.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002961 NM_019554
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_002961                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_002961                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_002961  
Additional cDNA sequence: AK292083.1 AY754741.1 AY762982.1 BC000838.1 BC016300.1 BC024974.1 CR450345.1 M80563.1
16 DOTS entries : DT.87017506 DT.95077872 DT.100819070 DT.95077836 DT.97859764 DT.95077834 DT.100697627 DT.101984896 DT.121326675 DT.100059942 DT.121326679 DT.121326682 DT.121326683 DT.100697637 DT.212995 DT.97800192
24/388 AceView cDNA sequences (see all 388
):AA296087 CR542163 BM741613 CR542185 BC016300 AA991227 BM747639 CB109571 AA872450 AA330444 BM687134 F27477 BE877461 AA057375 BM755230 BM687683 CB110143 BM759609 AI168075 BG034589 BM764773 BM770932 BM126466 BM699838
highest scoring ESTs for S100A4 :M80563 AA317260 AA330018 AU100338 AV712228 AV714505 AV735678 AV763009 AV763129 BC000838
Unigene Cluster for S100A4: S100 calcium binding protein A4 Hs.654444 [show with all ESTs ] Unigene Representative Sequence: BQ945534 GeneLoc Exon Structure 5/8 Alternative Splicing Database (ASD) splice patterns (SP) for S100A4 (see all 8
) ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c ^ 3a · 3b ^ 4 ^ 5a · 5b · 5c · 5d · 5e · 5f SP1 :       -       -   -     -             SP2 :       -     -   -   -     -             SP3 :       -   -   -   -   -     -             SP4 :       -   -   -   -   -                 SP5 :           -   -   -     -            
About this scheme ECgene alternative splicing isoforms for S100A4 4 Ensembl transcripts including schematic representations : ENST00000354332
ENST00000368716
ENST00000368715
ENST00000368714
Expression for S100A4
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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S100A4 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for S100A4 1 / 2 / 3
4 probe-sets matching S100A4 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: ATGTGTAACGSOURCE GeneReport for Unigene cluster: Hs.654444 Expression variation in blood from EXPOLDB for S100A4
UniProtKB/Swiss-Prot: S10A4_HUMAN, P26447 Tissue specificity : Ubiquitously expressed
Orthologs for S100A4
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for S100A4 gene from 5/6 species (see all 6
)
About this table Species with no ortholog for S100A4 ENSEMBL Gene Tree for S100A4 Paralogs for S100A4 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for S100A4 gene S100A6 2 S100A3 2 S100A1 2 S100Z 2 S100A5 2 S100A2 2
SNPs/Variants for S100A4 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for S100A4 (up to first 250kb)
Disorders & Mutations for S100A4
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 114210 10/48 Novoseek disease relationships for S100A4 gene (see all 48
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
metastasis
67.87
194
16265347 (7), 18360353 (6), 17101323 (6), 17051636 (5) (see all 83 )
cancer
51.37
82
9703888 (5), 18803290 (3), 18056757 (3), 16865243 (2) (see all 49 )
carcinoma
50.58
44
10738249 (4), 11875708 (4), 17276942 (4), 19194111 (3) (see all 20 )
tumors
50.53
155
17673926 (5), 12445462 (5), 7794250 (4), 16551737 (4) (see all 66 )
adenocarcinoma
46.63
39
16685438 (6), 11029520 (5), 12239456 (4), 9815629 (4) (see all 12 )
thyroid carcinoma anaplastic
43.91
5
16551737 (2), 16265347 (1)
breast cancer
42.80
43
18771601 (3), 8824556 (3), 17565747 (3), 16489073 (3) (see all 21 )
primary tumor
40.74
11
16489073 (2), 11839590 (2), 15006621 (1), 19043527 (1) (see all 6 )
carcinoma squamous cell
40.09
18
11251165 (5), 10737717 (3), 15006621 (2), 16297707 (2) (see all 5 )
adenoma follicular
39.22
3
15713996 (1), 17308358 (1)
About this table Tumor Gene Database : S100A4
Medical News for S100A4 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for S100A4 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/260 PubMed articles for S100A4 gene (see all 260
): Liprin beta 1, a member of the family of LAR transmembrane tyrosine phosphatase-interacting proteins, is a new target for the metastasis-associated protein S100A4 (Mts1). (PubMed id 11836260) 1, 3, 4 Kriajevska M....Lukanidin E. (2002) Solution structure of human Mts1 (S100A4) as determined by NMR spectroscopy. (PubMed id 12379109) 1, 3, 4 Vallely K.M....Weber D.J. (2002) Calcyclin and calvasculin exist in human platelets. (PubMed id 1482346) 1, 3, 4 Tomida Y.... Hidaka H. (1992) The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414) 3, 4 Gregory S.G.... Bentley D.R. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Six S100 genes are clustered on human chromosome 1q21: identification of two genes coding for the two previously unreported calcium-binding proteins S100D and S100E. (PubMed id 8341667) 3, 4 Engelkamp D.... Heizmann C.W. (1993) Transcriptional analysis of the mts1 gene with specific reference to 5' flanking sequences. (PubMed id 1329089) 3, 4 Tulchinsky E.M.... Lukanidin E. (1992) S100 alpha, CAPL, and CACY: molecular cloning and expression analysis of three calcium-binding proteins from human heart. (PubMed id 1384693) 3, 4 Engelkamp D.... Heizmann C.W. (1992) Identification of a single chromosome in the normal human genome essential for suppression of hamster cell transformation. (PubMed id 3155863) 2, 3 Stoler A. and Bouck N. (1985) Metastasis-associated protein S100A4: spotlight on its role in cell migration. (PubMed id 17504119) 1, 3 Tarabykina S....Kriajevska M. (2007)
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Genome Databases showing S100A4
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing S100A4
(According to HUGE )
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Specialized Databases showing S100A4 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for S100A4 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for S100A4:
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Proteins for S100A4
Publications for S100A4
SNPs for S100A4
Search Box for S100A4
Services for S100A4
Summaries for S100A4
Technologies for S100A4
Transcripts for S100A4
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GeneCards Homepage - Last full update: 1 Jul 2009
Incremental update: 13 Oct 2009