Aliases for S100A3 Gene
Aliases for S100A3 Gene
External Ids for S100A3 Gene
- HGNC: 10493
- Entrez Gene: 6274
- Ensembl: ENSG00000188015
- OMIM: 176992
- UniProtKB: P33764
Previous HGNC Symbols for S100A3 Gene
- S100E
Previous GeneCards Identifiers for S100A3 Gene
- GC01M151335
- GC01M149302
- GC01M150344
- GC01M150789
- GC01M9A0063
- GC01M9A0332
- GC01M151786
- GC01M124883
Summaries for S100A3 Gene
-
The protein encoded by this gene is a member of the S100 family of proteins containing 2 EF-hand calcium-binding motifs. S100 proteins are localized in the cytoplasm and/or nucleus of a wide range of cells, and involved in the regulation of a number of cellular processes such as cell cycle progression and differentiation. S100 genes include at least 13 members which are located as a cluster on chromosome 1q21. This protein has the highest content of cysteines of all S100 proteins, has a high affinity for Zinc, and is highly expressed in human hair cuticle. The precise function of this protein is unknown. [provided by RefSeq, Jul 2008]
GeneCards Summary for S100A3 Gene
S100A3 (S100 Calcium Binding Protein A3) is a Protein Coding gene. GO annotations related to this gene include calcium ion binding. An important paralog of this gene is S100A4.
UniProtKB/Swiss-Prot for S100A3 Gene
-
Binds both calcium and zinc. May be involved in calcium-dependent cuticle cell differentiation, hair shaft and hair cuticular barrier formation.
No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for S100A3 Gene
Genomics for S100A3 Gene
Regulatory Elements for S100A3 Gene
Enhancers for S100A3 Gene
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around S100A3 on UCSC Golden Path with GeneCards custom track
- Transcription factor binding sites by QIAGEN in the S100A3 gene promoter:
Regulatory Element Products
Genomic Location for S100A3 Gene
- Chromosome:
- 1
- Start:
- 153,547,329 bp from pter
- End:
- 153,549,372 bp from pter
- Size:
- 2,044 bases
- Orientation:
- Minus strand
Genomic View for S100A3 Gene
Genes around S100A3 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 1q21.3 by Ensembl
- 1q21.3 by Entrez Gene
- 1q21.3 by HGNC
S100A3 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for S100A3 Gene
Proteins for S100A3 Gene
-
Protein details for S100A3 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- P33764-S10A3_HUMAN
- Recommended name:
- Protein S100-A3
- Protein Accession:
- P33764
- D3DV51
- Q6FGE4
Protein attributes for S100A3 Gene
- Size:
- 101 amino acids
- Molecular mass:
- 11713 Da
- Quaternary structure:
-
- Homodimer and homotetramer for the citrullinated form.
Protein Expression for S100A3 Gene
Post-translational modifications for S100A3 Gene
- More than half of the arginine residues undergo citrullination by PAD1 and PAD2. Arg-51 is specifically citrullinated by PAD3 and promotes tetramerization.
Other Protein References for S100A3 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
-
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-
Santa Cruz Biotechnology (SCBT) Antibodies for S100A3
Protein Products
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OriGene Purified Proteins for S100A3
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-
Cloud-Clone Corp. Proteins for S100A3
- antibodies-online Proteins for S100A3: See all 25
- Search antibodies-online for peptides
- Search GeneTex for Proteins for S100A3
Assay Products
- antibodies-online Kits for S100A3: See all 3
No data available for DME Specific Peptides for S100A3 Gene
Domains & Families for S100A3 Gene
Gene Families for S100A3 Gene
Protein Domains for S100A3 Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for S100A3 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
P33764- Family:
-
- Belongs to the S-100 family.
Function for S100A3 Gene
Molecular function for S100A3 Gene
- GENATLAS Biochemistry:
- S100 calcium binding protein A3,epidermal differentiation complex
- UniProtKB/Swiss-Prot Function:
- Binds both calcium and zinc. May be involved in calcium-dependent cuticle cell differentiation, hair shaft and hair cuticular barrier formation.
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005509 | calcium ion binding | IEA | -- |
| GO:0008270 | zinc ion binding | IEA | -- |
| GO:0046872 | metal ion binding | IEA | -- |
| GO:0046914 | transition metal ion binding | IEA | -- |
Phenotypes for S100A3 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
-
ViGene Biosciences lentiviral particle packaged cDNA for S100A3 gene
-
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CRISPR Products
-
OriGene CRISPR knockouts for S100A3
-
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miRNA Products
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Inhibitory RNA Products
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Cell Line Products
-
Horizon Cell Lines for S100A3
-
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-
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Flow Cytometry Products
No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for S100A3 Gene
Localization for S100A3 Gene
Subcellular locations from UniProtKB/Swiss-Prot for S100A3 Gene
- Cytoplasm.
| Compartment | Confidence |
|---|---|
| nucleus | 5 |
| cytosol | 5 |
| extracellular | 2 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005730 | nucleolus | IDA | -- |
| GO:0005737 | cytoplasm | IEA | -- |
| GO:0005829 | cytosol | IDA | -- |
Pathways & Interactions for S100A3 Gene
No Data Available
No data available for Pathways by source and SIGNOR curated interactions for S100A3 Gene
Drugs & Compounds for S100A3 Gene
| Name | Status | Disease Links | Group | Role | Mechanism of Action | Clinical Trials |
|---|---|---|---|---|---|---|
| calcium | Nutra | 0 |
Transcripts for S100A3 Gene
mRNA/cDNA for S100A3 Gene
- (1) REFSEQ mRNAs :
- (5) Additional mRNA sequences :
- (388) Selected AceView cDNA sequences:
- (2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for S100A3 Gene
CRISPR Products
-
OriGene CRISPR knockouts for S100A3
-
Santa Cruz Biotechnology (SCBT) CRISPR for S100A3
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miRNA Products
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Inhibitory RNA Products
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-
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Clone Products
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Flow Cytometry Products
Expression for S100A3 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
-
Hair (Integumentary System)
- Fetal Matrix Cells Hair Follicle
-
Epithelial Cells
- Fetal Matrix Cells Hair Follicle
-
Heart (Cardiovascular System)
mRNA differential expression in normal tissues according to GTEx for S100A3 Gene
This gene is overexpressed in Skin - Not Sun Exposed (Suprapubic) (x24.8) and Skin - Sun Exposed (Lower leg) (x5.8).
This gene is overexpressed in Hair follicle (68.6).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for S100A3 Gene
NURSA nuclear receptor signaling pathways regulating expression of S100A3 Gene:
S100A3SOURCE GeneReport for Unigene cluster for S100A3 Gene:
Hs.557609mRNA Expression by UniProt/SwissProt for S100A3 Gene:
P33764-S10A3_HUMAN
Tissue specificity:
Skin specific, specifically expressed at the inner endocuticle of hair fibers.
Evidence on tissue expression from TISSUES for S100A3 Gene
- Lung(4.2)
Primer Products
-
OriGene qPCR primer pairs and template standards for S100A3
-
OriGene qPCR primer pairs for S100A3
No data available for Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for S100A3 Gene
Orthologs for S100A3 Gene
This gene was present in the common ancestor of mammals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | S100A3 34 35 |
|
||
| rat (Rattus norvegicus) |
Mammalia | S100a3 34 |
|
||
| mouse (Mus musculus) |
Mammalia | S100a3 34 16 35 |
|
||
| dog (Canis familiaris) |
Mammalia | S100A3 34 35 |
|
||
| oppossum (Monodelphis domestica) |
Mammalia | S100A3 35 |
|
OneToOne | |
| cow (Bos Taurus) |
Mammalia | S100A3 35 |
|
OneToOne | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | S100A3 35 |
|
OneToOne |
- Species where no ortholog for S100A3 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- lizard (Anolis carolinensis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
- zebrafish (Danio rerio)
Paralogs for S100A3 Gene
Paralogs for S100A3 Gene
(10) SIMAP similar genes for S100A3 Gene using alignment to 1 proteins:
Variants for S100A3 Gene
| SNP ID | Clin | Chr 01 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs193921084 | Uncertain significance | 153,548,461(-) | AGGCG(G/T)TAGCT | nc-transcript-variant, reference, missense | |
| rs1001097220 | -- | 153,548,255(+) | CTGTG(C/T)TCATG | intron-variant | |
| rs1001565381 | -- | 153,546,837(+) | CAAAC(C/G)CAGTG | intron-variant, downstream-variant-500B, upstream-variant-2KB | |
| rs1001827765 | -- | 153,547,068(+) | ATGAG(A/C)ACTGA | intron-variant, downstream-variant-500B, upstream-variant-2KB | |
| rs1001928447 | -- | 153,550,981(+) | GGTTC(A/G)GCTTG | intron-variant, upstream-variant-2KB |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv3587584 | CNV | gain | 21293372 |
| esv3587591 | CNV | gain | 21293372 |
| nsv1002705 | CNV | gain | 25217958 |
| nsv831603 | CNV | gain | 17160897 |
Residual Variation Intolerance Score:
70.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
4.43;
63.90% of all genes are more intolerant (likely to be disease-causing)
Relevant External Links for S100A3 Gene
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for S100A3 Gene
Disorders for S100A3 Gene
Relevant External Links for S100A3
No disorders were found for S100A3 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for S100A3 Gene
Publications for S100A3 Gene
- Specific citrullination causes assembly of a globular S100A3 homotetramer: a putative Ca2+ modulator matures human hair cuticle. (PMID: 18083705) Kizawa K. … Heizmann C.W. (J. Biol. Chem. 2008) 3 4 22 64
- Probing the structure of the human Ca2+- and Zn2+-binding protein S100A3: spectroscopic investigations of its transition metal ion complexes, and three-dimensional structural model. (PMID: 9920417) Fritz G. … Kroneck P.M.H. (Biochim. Biophys. Acta 1998) 3 4 22 64
- Six S100 genes are clustered on human chromosome 1q21: identification of two genes coding for the two previously unreported calcium-binding proteins S100D and S100E. (PMID: 8341667) Engelkamp D. … Heizmann C.W. (Proc. Natl. Acad. Sci. U.S.A. 1993) 2 3 4 64
- Refined crystal structures of human Ca(2+)/Zn(2+)-binding S100A3 protein characterized by two disulfide bridges. (PMID: 21377473) Unno M. … Kizawa K. (J. Mol. Biol. 2011) 3 4 64
- Variation in genes of the epidermal differentiation complex in German atopic dermatitis patients. (PMID: 19601998) Stemmler S. … Hoffjan S. (Int. J. Immunogenet. 2009) 3 46 64
Products for S100A3 Gene
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- Mammalian expression: PiggyBac
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- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for S100A3 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
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- (10) PhosphoSitePlus
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- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
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- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
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- (62) NCBI
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- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
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- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
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- (77) Proteopedia
- (78) MOPED
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- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
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