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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

S100A16 Gene

protein-coding   GIFtS: 50
GCID: GC01M153579

S100 Calcium Binding Protein A16
  See related disease
at
MalaCards
 

Aliases
for S100A16 gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section
Aliases
S100 Calcium Binding Protein A161 2     S100 Calcium-Binding Protein A162 3
Aging-Associated Gene 13 Protein2 3     DT1P1A72
Protein S100-F2 3     Aging-Associated Protein 132
S100F2 3     Protein S100-A162

External Ids:    HGNC: 204411   Entrez Gene: 1405762   Ensembl: ENSG000001886437   UniProtKB: Q96FQ63   

Export aliases for S100A16 gene to outside databases

Previous GC identifers: GC01M9A0123 GC01M9A0392 GC01M150393 GC01M151845 GC01M124942


Summaries
for S100A16 gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
GeneCards Summary for S100A16 Gene: 
S100A16 (S100 calcium binding protein A16) is a protein-coding gene. Diseases associated with S100A16 include hepatocellular carcinoma. GO annotations related to this gene include protein homodimerization activity and calcium ion binding.

UniProtKB/Swiss-Prot: S10AG_HUMAN, Q96FQ6
Function: Calcium-binding protein. Binds one calcium ion per monomer

Gene Wiki entry for S100A16 Gene


Genomic Views
for S100A16 gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000001.10  NT_004487.19  NC_018912.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the S100A16 gene promoter:
         Brachyury   MyoD   FOXD1   MIF-1   STAT5A   LCR-F1   AREB6   CREB   deltaCREB   Ik-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: S100A16 promoter sequence
   Search SABiosciences Chromatin IP Primers for S100A16

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat S100A16


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1q21   Ensembl cytogenetic band:  1q21.3   HGNC cytogenetic band: 1q21

S100A16 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
S100A16 gene location

GeneLoc information about chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01M153579:  view genomic region     (about GC identifiers)

Start:
 153,579,362 bp from pter      End:
 153,585,621 bp from pter
Size:
 6,260 bases      Orientation:
 minus strand

Proteins
for S100A16 gene

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section
UniProtKB/Swiss-Prot: S10AG_HUMAN, Q96FQ6 (See protein sequence)
Recommended Name: Protein S100-A16  
Size: 103 amino acids; 11801 Da
Subunit: Homodimer
Subcellular location: Nucleus, nucleolus. Cytoplasm. Note=Primarily nucleolar. Translocates from the nucleolus to
the cytoplasm in response to an increase of intracellular calcium levels
3 PDB 3D structures from and Proteopedia for S100A16:
2L50 (3D)        2L51 (3D)        3NXA (3D)    
Secondary accessions: A8K439 D3DV52 Q5RHS6

Explore the universe of human proteins at neXtProt for S100A16: NX_Q96FQ6

Explore proteomics data for S100A16 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q96FQ6

    • S100A16 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    S100A16 Protein Expression
    REFSEQ proteins: NP_525127.1  
    ENSEMBL proteins: 
     ENSP00000357693   ENSP00000357695   ENSP00000357692   ENSP00000357694  

    Human Recombinant Protein Products for S100A16: 
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    ProSpec Recombinant Protein for S100A16
    Cloud-Clone Corp. Proteins for S100A16 

    Gene Ontology (GO): 5 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus ----
    GO:0005730nucleolus IDA17030513
    GO:0005737cytoplasm IDA--
    GO:0005829cytosol IDA17030513
    GO:0005886plasma membrane IDA--

    S100A16 for ontologies           About GeneDecksing



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    Protein Domains /
    Families
    for S100A16 gene

    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    		 HGNC Gene Families: 
    EFHAND: EF-hand domain containing
    S100: S100 calcium binding proteins

    4 InterPro protein domains:
     IPR018247 EF_Hand_1_Ca_BS
     IPR011992 EF-hand-like_dom
     IPR002048 EF_hand_dom
     IPR001751 S100/CaBP-9k_CS

    Graphical View of Domain Structure for InterPro Entry Q96FQ6

    ProtoNet protein and cluster: Q96FQ6

    1 Blocks protein domain: IPB001751 Calcium-binding protein

    UniProtKB/Swiss-Prot: S10AG_HUMAN, Q96FQ6
    Similarity: Belongs to the S-100 family
    Similarity: Contains 2 EF-hand domains


    S100A16 for domains           About GeneDecksing


    Function
    for S100A16 gene

    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section
    Molecular Function:

         UniProtKB/Swiss-Prot Summary: S10AG_HUMAN, Q96FQ6
    Function: Calcium-binding protein. Binds one calcium ion per monomer

         Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005509calcium ion binding IDA17030513
    GO:0042803protein homodimerization activity IPI17030513
         
    S100A16 for ontologies           About GeneDecksing


    Animal Models:
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    1 QIAGEN miScript miRNA Assays for microRNA that regulate S100A16:
    hsa-miR-4310
    SwitchGear 3'UTR luciferase reporter plasmid: S100A16 3' UTR sequence
    Inhib. RNA
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    Pathways & Interactions
    for S100A16 gene

    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section




    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for S100A16

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/27 Interacting proteins for S100A16 (Q96FQ62, 3 ENSP000003576924) via UniProtKB, MINT, STRING, and/or I2D (see all 27)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    S100A14Q9HCY82, 3, ENSP000003404634MINT-68275 I2D: score=4 STRING: ENSP00000340463
    UCHL5Q9Y5K53, ENSP000003564254I2D: score=1 STRING: ENSP00000356425
    GABARAPL1Q9H0R83I2D: score=1 
    CERS2ENSP000002716884STRING: ENSP00000271688
    ECM1ENSP000003580434STRING: ENSP00000358043
    About this table

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0051592response to calcium ion IEA--

    S100A16 for ontologies           About GeneDecksing



    Drugs & Compounds
    for S100A16 gene

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for S100A16 (S10AG)

    Search CenterWatch for drugs/clinical trials and news about S100A16 / S10AG

    Transcripts
    for S100A16 gene

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section
    REFSEQ mRNAs for S100A16 gene: 
    NM_080388.1  

    Unigene Cluster for S100A16:

    S100 calcium binding protein A16
    Hs.515714  [show with all ESTs]
    Unigene Representative Sequence: BQ920362
    5 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000368704 ENST00000368706(uc001fcd.1) ENST00000368703 ENST00000368705(uc001fcc.2)
    ENST00000474991
    miRNA
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    hsa-miR-4310
    SwitchGear 3'UTR luciferase reporter plasmid: S100A16 3' UTR sequence
    Inhib. RNA
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    Additional mRNA sequence: 

    AK290804.1 AY221961.1 AY762098.1 BC010541.1 BC019099.1 BC095462.1 U23859.1 U92985.1 

    12 DOTS entries:

    DT.95288033  DT.448132  DT.100788970  DT.91772678  DT.91772670  DT.95176495  DT.95176522  DT.100788973 
    DT.121450699  DT.75131082  DT.91941117  DT.95212076 

    24/573 AceView cDNA sequences (see all 573):

    BQ653175 BM984930 BQ939988 BM999349 BM915870 CA440985 CA421176 BQ224401 
    BI254846 BQ232812 CN483324 BU542079 BM989016 BE906900 BM975399 BQ901197 
    AV646282 BG680976 AW026670 BG284784 AA502335 BI259492 AI306701 AA303323 

    GeneLoc Exon Structure

    5/7 Alternative Splicing Database (ASD) splice patterns (SP) for S100A16 (see all 7)    About this scheme

    ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7a · 7b · 7c · 7d · 7e · 7f · 7g ^ 8
    SP1:                                -                 -                                             
    SP2:              -     -     -     -                 -                                             
    SP3:              -     -     -     -                                                               
    SP4:                    -     -     -                 -                                             
    SP5:                                -                 -                                             


    ECgene alternative splicing isoforms for S100A16

    Expression
    for S100A16 gene

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    S100A16 expression in normal human tissues (normalized intensities)      S100A16 embryonic expression: see
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: AGCAGGAGCA
    S100A16 Expression
    About this image


    S100A16 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database 
     5/7 selected tissues (see all 7) fully expand
     
     Gut Tube (Gastrointestinal Tract)    fully expand to see all 2 entries
             Hindgut
     
     Lower Urinary Tract (Urinary System)    fully expand to see all 2 entries
             visceral organ/urethra of male   
     
     Epidermis (Integumentary System)
             Stratified Epidermis
     
     Ovary (Reproductive System)
             Ovarian Somatic Cells Ovigerous Cord
     
     Nose (Sensory Organs)
             sensory organ/nose/naris   

    See S100A16 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for S100A16

    SOURCE GeneReport for Unigene cluster: Hs.515714
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    In Situ
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    Orthologs
    for S100A16 gene

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section
    This gene was present in the common ancestor of chordates.

    Orthologs for S100A16 gene from 3/8 species (see all 8)    About this table
    Organism Taxonomic
    classification    		 Gene Description Human
    Similarity    		 Orthology
    Type    		 Details
    mouse
    (Mus musculus)    		 Mammalia S100a161 , 5 S100 calcium binding protein A161, 5 83.82(n)1
    84.47(a)1    		   3 (39.25 cM)5
    678601  NM_026416.21  NP_080692.11 
     905372545 
    chicken
    (Gallus gallus)    		 Aves LOC1008590941 protein S100-A16-like 73.05(n)
    68.09(a)    		   100859094  XM_003642637.1  XP_003642685.1 
    tropical clawed frog
    (Xenopus tropicalis)    		 Amphibia Str.33272 Transcribed sequence with weak similarity to protein more 75.15(n)    BQ527127.1 


    ENSEMBL Gene Tree for S100A16 (if available)
    TreeFam Gene Tree for S100A16 (if available)

    Paralogs
    for S100A16 gene

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for S100A16 gene
    13 SIMAP similar genes for S100A16 using alignment to 1 protein entry:     S10AG_HUMAN:
    S100B    S100Z    S100A4    S100P    S100A13    S100A10
    S100A6    HRNR    S100A12    S100A2    S100A11    S100A14
    S100A8

    S100A16 for paralogs           About GeneDecksing



    Genomic Variants
    for S100A16 gene

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/158 SNPs in S100A16 are shown (see all 158)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance    		Chr 1 posSequence#AA
    Chg    		TypeMore#Allele
    freq    		PopTotal
    sample    		More
    ----------
    rs1164490051,2
    		C,F--153578987(+) CTGTAC/GAGGGG 1 -- int11Minor allele frequency- G:0.03WA 118
    rs557677311,2
    		C--153579068(+) AAAAA-/A/AA  
                GACTA     		1 -- int11NA 2
    rs285484771,2
    		C--153579086(+) TGGTCC/GCTCTC 1 -- int12Minor allele frequency- G:0.00NA 4
    rs1808800301,2
    		--153579109(+) AGTGAA/GGACTA 1 -- int10--------
    rs1385056391,2
    		--153579459(+) CAACAA/GGAGGA 1 -- ut310--------
    rs1417280411,2
    		C--153579817(+) TGAGA-/CCCCCC 1 -- ut310--------
    rs1159179751,2
    		C,F--153579864(+) AGGGAC/ACCCAG 1 -- ut311Minor allele frequency- A:0.03WA 118
    rs2015957331,2
    		--153580051(+) TTTGGC/GGATGG 2 P A mis10--------
    rs1473575461,2
    		C,F--153580052(+) TTGGCG/AATGGG 2 /I syn12Minor allele frequency- A:0.00NA EU 5875
    rs2010042641,2
    		--153580060(+) GGGGCC/TGGTGA 2 S G mis10--------

    HapMap Linkage Disequilibrium report for S100A16 (153579362 - 153585621 bp)

    Structural Variations
          Database of Genomic Variants (DGV) variations for S100A16: --
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    SeqTarget long-range PCR primers for resequencing S100A16
    DNA2.0 Custom Variant and Variant Library Synthesis for S100A16

    Disorders / Diseases
    for S100A16 gene

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    		 2 diseases for S100A16:    About MalaCards
    hepatocellular carcinoma    


    S100A16 for disorders           About GeneDecksing


    Export disorders for S100A16 gene to outside databases

    Publications
    for S100A16 gene

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for S100A16 gene, integrated from 9 sources (see all 21):
    (articles sorted by number of sources associating them with S100A16)    		    Utopia: connect your pdf to the dynamic
    world of online information

    1. Structural characterization of human S100A16, a low-affinity calcium binder. (PubMed id 21046186)1, 2 Babini E....Parigi G. (2011)
    2. S100A16, a novel calcium-binding protein of the EF-ha nd superfamily. (PubMed id 17030513)1, 2 Sturchler E....Heizmann C.W. (2006)
    3. The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)1, 2 Gregory S.G.... Bentley D.R. (2006)
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    5. Mapping and characterization of novel (CAG)n repeat cDNAs from adult human brain derived by the oligo capture method. (PubMed id 9417904)1, 3 Reddy P.H....Tagle D.A. (1997)
    6. A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (2012)
    7. The interaction between ubiquitin C-terminal hydrolas e 37 and glucose-regulated protein 78 in hepatocellular carcinoma. (PubMed id 21800051)1 Fang Y....Shen X. (2012)
    8. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)
    9. Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (2011)
    10. Interactions of pathological hallmark proteins: tubul in polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049)1 OlA!h J....OvA!di J. (2011)

    External Searches for S100A16 gene

    (in PubMed, OMIM, and NCBI Bookshelf)
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    Genome Databases showing S100A16 gene

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 140576 HGNC: 20441 AceView: S100A16 Ensembl:ENSG00000188643 euGenes: HUgn140576
    ECgene: S100A16 H-InvDB: S100A16

    Other Databases showing S100A16 gene

    (According to HUGE)
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    Specialized Databases showing S100A16 gene

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for S100A16 Pharmacogenomics, SNPs, Pathways

    Intellectual Property
    for S100A16 gene

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    		Patent Information for S100A16 gene:
    Search GeneIP for patents involving S100A16

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