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Aliases for RPS27 Gene

Aliases for RPS27 Gene

  • Ribosomal Protein S27 2 3 5
  • Small Ribosomal Subunit Protein ES27 3 4
  • Metallopan-Stimulin 1 3 4
  • Metallopanstimulin 1 2 3
  • MPS-1 3 4
  • MPS1 3 4
  • Ribosomal Protein S27 (Metallopanstimulin 1) 2
  • 40S Ribosomal Protein S27 3
  • DBA17 3
  • S27 3

External Ids for RPS27 Gene

Previous GeneCards Identifiers for RPS27 Gene

  • GC01P151780
  • GC01P149694
  • GC01P150738
  • GC01P151181
  • GC01P151182
  • GC01P150777
  • GC01P152229
  • GC01P153963
  • GC01P125325

Summaries for RPS27 Gene

Entrez Gene Summary for RPS27 Gene

  • Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of four RNA species and approximately 80 structurally distinct proteins. This gene encodes a member of the S27e family of ribosomal proteins and component of the 40S subunit. The encoded protein contains a C4-type zinc finger domain that can bind to zinc and may bind to nucleic acid. Studies in rat indicate that ribosomal protein S27 is located near ribosomal protein S18 in the 40S subunit and is covalently linked to translation initiation factor eIF3. Mutations in this gene have been identified in numerous melanoma patients and in at least one patient with Diamond-Blackfan anemia (DBA). Elevated expression of this gene has been observed in various human cancers. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. [provided by RefSeq, Mar 2017]

GeneCards Summary for RPS27 Gene

RPS27 (Ribosomal Protein S27) is a Protein Coding gene. Diseases associated with RPS27 include Diamond-Blackfan Anemia 17 and Diamond-Blackfan Anemia. Among its related pathways are Viral mRNA Translation and Cell Cycle, Mitotic. GO annotations related to this gene include poly(A) RNA binding and structural constituent of ribosome. An important paralog of this gene is RPS27L.

UniProtKB/Swiss-Prot for RPS27 Gene

  • Component of the small ribosomal subunit (PubMed:8706699). Required for proper rRNA processing and maturation of 18S rRNAs (PubMed:25424902).

Gene Wiki entry for RPS27 Gene

Additional gene information for RPS27 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS27 Gene

Genomics for RPS27 Gene

Regulatory Elements for RPS27 Gene

Enhancers for RPS27 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H154965 1.4 ENCODE dbSUPER 19.1 +981.3 981295 12 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 SP3 NFYC UBAP2L GON4L CLK2 YY1AP1 KIAA0907 THBS3 KRTCAP2 ENSG00000271267 SHC1 FLAD1
GH01H153989 1.2 ENCODE 20.1 +0.8 833 3 HDGF FOXA2 PKNOX1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B CREB3L4 CRTC2 UBAP2L SLC27A3 RPS27 SHC1 CHTOP ILF2 INTS3 SLC39A1
GH01H153961 1.8 FANTOM5 ENCODE dbSUPER 11.9 -27.5 -27464 3 HDGF PKNOX1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 ZNF207 ILF2 CREB3L4 UBAP2L RAB13 RPS27 RPL34P5 GATAD2B CRTC2 HAX1 C1orf189
GH01H154935 1.8 FANTOM5 ENCODE dbSUPER 10.6 +946.9 946893 3 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC MEF2D SSRP1 GON4L KIAA0907 UBAP2L CLK2 ENSG00000271267 RUSC1-AS1 CREB3L4 THBS3 KRTCAP2 SHC1
GH01H154351 1.6 Ensembl ENCODE dbSUPER 10.2 +362.4 362425 3 HDGF PKNOX1 FOXA2 ARNT ZFP64 ARID4B DMAP1 YY1 ZNF766 FOS CLK2 UBAP2L CHTOP CRTC2 RUSC1-AS1 SLC27A3 ILF2 FLAD1 CREB3L4 THBS3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPS27 on UCSC Golden Path with GeneCards custom track

Promoters for RPS27 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000013868 341 1401 HDGF FOXA2 PKNOX1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B

Genomic Location for RPS27 Gene

Chromosome:
1
Start:
153,990,759 bp from pter
End:
153,992,155 bp from pter
Size:
1,397 bases
Orientation:
Plus strand

Genomic View for RPS27 Gene

Genes around RPS27 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS27 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS27 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS27 Gene

Proteins for RPS27 Gene

  • Protein details for RPS27 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P42677-RS27_HUMAN
    Recommended name:
    40S ribosomal protein S27
    Protein Accession:
    P42677
    Secondary Accessions:
    • Q5T4L6

    Protein attributes for RPS27 Gene

    Size:
    84 amino acids
    Molecular mass:
    9461 Da
    Cofactor:
    Name=Zn(2+); Xref=ChEBI:CHEBI:29105;
    Quaternary structure:
    • Component of the small ribosomal subunit.

    Three dimensional structures from OCA and Proteopedia for RPS27 Gene

neXtProt entry for RPS27 Gene

Post-translational modifications for RPS27 Gene

  • Ubiquitination at Lys5
  • Modification sites at PhosphoSitePlus

Other Protein References for RPS27 Gene

No data available for DME Specific Peptides for RPS27 Gene

Domains & Families for RPS27 Gene

Gene Families for RPS27 Gene

HGNC:
Human Protein Atlas (HPA):
  • Plasma proteins
  • Predicted intracellular proteins
  • Ribosomal proteins

Protein Domains for RPS27 Gene

Suggested Antigen Peptide Sequences for RPS27 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P42677

UniProtKB/Swiss-Prot:

RS27_HUMAN :
  • Belongs to the eukaryotic ribosomal protein eS27 family.
Family:
  • Belongs to the eukaryotic ribosomal protein eS27 family.
genes like me logo Genes that share domains with RPS27: view

Function for RPS27 Gene

Molecular function for RPS27 Gene

GENATLAS Biochemistry:
60S ribosomal protein S27
UniProtKB/Swiss-Prot Function:
Component of the small ribosomal subunit (PubMed:8706699). Required for proper rRNA processing and maturation of 18S rRNAs (PubMed:25424902).

Phenotypes From GWAS Catalog for RPS27 Gene

Gene Ontology (GO) - Molecular Function for RPS27 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding NAS 8908372
GO:0003723 RNA binding IDA 22681889
GO:0003735 structural constituent of ribosome IBA,IEA --
GO:0005515 protein binding IPI 21170087
GO:0008270 zinc ion binding NAS 8407955
genes like me logo Genes that share ontologies with RPS27: view
genes like me logo Genes that share phenotypes with RPS27: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for RPS27
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RPS27 Gene

Localization for RPS27 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RPS27 gene
Compartment Confidence
nucleus 5
cytosol 5
extracellular 3
mitochondrion 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (2)
  • Endoplasmic reticulum (2)
  • Nucleoli (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for RPS27 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005634 nucleus IDA 8407955
GO:0005654 nucleoplasm TAS --
GO:0005829 cytosol TAS --
GO:0005840 ribosome IEA,NAS 8908372
genes like me logo Genes that share ontologies with RPS27: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for RPS27 Gene

Pathways & Interactions for RPS27 Gene

SuperPathways for RPS27 Gene

SuperPathway Contained pathways
1 Viral mRNA Translation
.55
2 Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S
3 Cell Cycle, Mitotic
.60
4 Influenza Viral RNA Transcription and Replication
5 rRNA processing in the nucleus and cytosol
genes like me logo Genes that share pathways with RPS27: view

Pathways by source for RPS27 Gene

Gene Ontology (GO) - Biological Process for RPS27 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000028 ribosomal small subunit assembly IBA --
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay TAS --
GO:0006364 rRNA processing TAS --
GO:0006412 translation IEA,NAS 8908372
GO:0006413 translational initiation TAS --
genes like me logo Genes that share ontologies with RPS27: view

No data available for SIGNOR curated interactions for RPS27 Gene

Drugs & Compounds for RPS27 Gene

(2) Drugs for RPS27 Gene - From: HMDB and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
cyclic amp Experimental Pharma 0
genes like me logo Genes that share compounds with RPS27: view

Transcripts for RPS27 Gene

Unigene Clusters for RPS27 Gene

Ribosomal protein S27:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for RPS27
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RPS27 Gene

No ASD Table

Relevant External Links for RPS27 Gene

GeneLoc Exon Structure for
RPS27
ECgene alternative splicing isoforms for
RPS27

Expression for RPS27 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS27 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for RPS27 Gene



Protein tissue co-expression partners for RPS27 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of RPS27 Gene:

RPS27

SOURCE GeneReport for Unigene cluster for RPS27 Gene:

Hs.546291

mRNA Expression by UniProt/SwissProt for RPS27 Gene:

P42677-RS27_HUMAN
Tissue specificity: Expressed in a wide variety of actively proliferating cells and tumor tissues.

Evidence on tissue expression from TISSUES for RPS27 Gene

  • Liver(4.9)
  • Blood(4.5)
  • Heart(4.5)
  • Muscle(3.9)
  • Nervous system(3.8)
  • Intestine(3.4)
  • Lung(2.9)
  • Stomach(2.9)
  • Eye(2.5)
  • Pancreas(2.5)
  • Spleen(2.5)
  • Skin(2.4)
  • Kidney(2.1)
genes like me logo Genes that share expression patterns with RPS27: view

Primer Products

No data available for mRNA differential expression in normal tissues , Protein differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS27 Gene

Orthologs for RPS27 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RPS27 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RPS27 33 34 34
  • 100 (n)
mouse
(Mus musculus)
Mammalia Gm9846 34
  • 100 (a)
OneToMany
Rps27 34
  • 100 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia RPS27 34
  • 98 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rps27 33
  • 96.03 (n)
cow
(Bos Taurus)
Mammalia -- 34
  • 95 (a)
OneToMany
RPS27 33 34
  • 94.84 (n)
dog
(Canis familiaris)
Mammalia RPS27 33 34 34
  • 88.89 (n)
lizard
(Anolis carolinensis)
Reptilia RPS27 34
  • 100 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rps27 33
  • 80.16 (n)
zebrafish
(Danio rerio)
Actinopterygii rps27.1 34
  • 96 (a)
ManyToMany
rps27.2 33 34
  • 80.95 (n)
-- 33
fruit fly
(Drosophila melanogaster)
Insecta CG10423 35
  • 85 (a)
RpS27 33 34
  • 73.98 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP007157 33
  • 74.21 (n)
worm
(Caenorhabditis elegans)
Secernentea rps-27 33 34
  • 68.27 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RPS27A 34
  • 70 (a)
ManyToMany
RPS27B 33 34
  • 62.6 (n)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_ACR065C 33
  • 61.79 (n)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0E11661g 33
  • 58.94 (n)
thale cress
(Arabidopsis thaliana)
eudicotyledons AT5G47930 33
  • 71.86 (n)
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.7575 33
rice
(Oryza sativa)
Liliopsida Os02g0478700 33
  • 72.29 (n)
barley
(Hordeum vulgare)
Liliopsida Hv.190 33
corn
(Zea mays)
Liliopsida Zm.7093 33
sea squirt
(Ciona savignyi)
Ascidiacea CSA.10862 34
  • 96 (a)
OneToMany
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes rps27 33
  • 67.07 (n)
bread mold
(Neurospora crassa)
Ascomycetes NCU00618 33
  • 65.85 (n)
Species where no ortholog for RPS27 was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RPS27 Gene

ENSEMBL:
Gene Tree for RPS27 (if available)
TreeFam:
Gene Tree for RPS27 (if available)

Paralogs for RPS27 Gene

Paralogs for RPS27 Gene

(2) SIMAP similar genes for RPS27 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with RPS27: view

Variants for RPS27 Gene

Sequence variations from dbSNP and Humsavar for RPS27 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000118647 -- 153,989,524(+) GATTA(C/T)AGGCG intron-variant, upstream-variant-2KB
rs1000509046 -- 153,988,937(+) ATTTT(C/T)TGAGA intron-variant, upstream-variant-2KB
rs1002259443 -- 153,991,943(+) GGTAG(C/G)TAAGA intron-variant, upstream-variant-2KB
rs1002934205 -- 153,989,537(+) AGCCA(A/C/G)GGCGC intron-variant, upstream-variant-2KB
rs1004220318 -- 153,989,566(+) TTCAA(A/G)GGAGT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RPS27 Gene

Variant ID Type Subtype PubMed ID
nsv946401 CNV duplication 23825009

Variation tolerance for RPS27 Gene

Residual Variation Intolerance Score: 48.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.04; 0.96% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RPS27 Gene

Human Gene Mutation Database (HGMD)
RPS27
SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS27

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RPS27 Gene

Disorders for RPS27 Gene

MalaCards: The human disease database

(6) MalaCards diseases for RPS27 Gene - From: HGMD, OMIM, ClinVar, Orphanet, DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
diamond-blackfan anemia 17
  • dba17
diamond-blackfan anemia
  • diamond-blackfan anemia 1
irregular astigmatism
pierre robin syndrome
  • pierre robin sequence
squamous cell carcinoma, head and neck
  • squamous cell carcinoma, head and neck, somatic
- elite association - COSMIC cancer census association via MalaCards
Search RPS27 in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

RS27_HUMAN
  • Diamond-Blackfan anemia 17 (DBA17) [MIM:617409]: A form of Diamond-Blackfan anemia, a congenital non-regenerative hypoplastic anemia that usually presents early in infancy. Diamond-Blackfan anemia is characterized by a moderate to severe macrocytic anemia, erythroblastopenia, and an increased risk of malignancy. 30 to 40% of Diamond-Blackfan anemia patients present with short stature and congenital anomalies, the most frequent being craniofacial (Pierre-Robin syndrome and cleft palate), thumb and urogenital anomalies. {ECO:0000269 PubMed:25424902}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Relevant External Links for RPS27

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPS27
genes like me logo Genes that share disorders with RPS27: view

No data available for Genatlas for RPS27 Gene

Publications for RPS27 Gene

  1. Primary structures and sequence analysis of human ribosomal proteins L39 and S27. (PMID: 8908372) Tsui SK … Lee CY (Biochemistry and molecular biology international 1996) 2 3 4 22 60
  2. A growth factor-inducible gene encodes a novel nuclear protein with zinc finger structure. (PMID: 8407955) Fernandez-Pol JA … Hamilton PD (The Journal of biological chemistry 1993) 2 3 4 22 60
  3. Loss of function mutations in RPL27 and RPS27 identified by whole-exome sequencing in Diamond-Blackfan anaemia. (PMID: 25424902) Wang R … Ito E (British journal of haematology 2015) 3 4 60
  4. Extraribosomal function of metallopanstimulin-1: reducing paxillin in head and neck squamous cell carcinoma and inhibiting tumor growth. (PMID: 19642098) Dai Y … Stack BC (International journal of cancer 2010) 3 22 60
  5. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PMID: 17081983) Olsen JV … Mann M (Cell 2006) 3 4 60

Products for RPS27 Gene

Sources for RPS27 Gene

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