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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

RYR1 Gene

protein-coding   GIFtS: 68
GCID: GC19P038924

ryanodine receptor 1 (skeletal)

(Previous name: central core disease of muscle )
(Previous symbols: MHS, MHS1, CCO)
 Explore 57 diseases affiliated with
RYR1 via our new
 Human Malady Compendium 
Biological research products
for RYR1
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Ryanodine Receptor 1 (Skeletal)1 2     RYDR2 3
CCO1 2 5     RYR-12 3
MHS1 2 5     SKRR2
MHS11 2     Ryanodine Receptor 12
RYR1 2     Ryanodine Receptor Type12
Central Core Disease Of Muscle1 2     Sarcoplasmic Reticulum Calcium Release Channel2
Skeletal Muscle Calcium Release Channel2 3     Type 1-Like Ryanodine Receptor2
Skeletal Muscle Ryanodine Receptor2 3     RyR13
Type 1 Ryanodine Receptor2 3     Skeletal Muscle-Type Ryanodine Receptor3

External Ids:    HGNC: 104831   Entrez Gene: 62612   Ensembl: ENSG000001962187   OMIM: 1809015   UniProtKB: P218173   

Export aliases for RYR1 gene to outside databases

Previous GC identifers: GC19P039538 GC19P039315 GC19P043600 GC19P043616 GC19P035371


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for RYR1:
This gene encodes a ryanodine receptor found in skeletal muscle. The encoded protein functions as a calcium release
channel in the sarcoplasmic reticulum but also serves to connect the sarcoplasmic reticulum and transverse tubule.
Mutations in this gene are associated with malignant hyperthermia susceptibility, central core disease, and minicore
myopathy with external ophthalmoplegia. Alternatively spliced transcripts encoding different isoforms have been
described. (provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: RYR1_HUMAN, P21817
Function: Calcium channel that mediates the release of Ca(2+) from the sarcoplasmic reticulum into the cytoplasm and
thereby plays a key role in triggering muscle contraction following depolarization of T-tubules. Repeated very
high-level exercise increases the open probability of the channel and leads to Ca(2+) leaking into the cytoplasm. Can
also mediate the release of Ca(2+) from intracellular stores in neurons, and may thereby promote prolonged Ca(2+)
signaling in the brain. Required for normal embryonic development of muscle fibers and skeletal muscle. Required for
normal heart morphogenesis, skin development and ossification during embryogenesis (By similarity)

Gene Wiki entry for RYR1


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000019.9  NC_018930.1  NT_011109.16  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the RYR1 gene promoter:
         AhR   CREB   p53   NRSF form 1   deltaCREB   NRSF form 2   YY1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidRYR1 promoter sequence
   Search SABiosciences Chromatin IP Primers for RYR1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RYR1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19q13.1   Ensembl cytogenetic band:  19q13.2   HGNC cytogenetic band: 19q13.1

RYR1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RYR1 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19P038924:  view genomic region     (about GC identifiers)

Start:
38,924,340 bp from pter      End:
39,078,204 bp from pter
Size:
153,865 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: RYR1_HUMAN, P21817 (See protein sequence)
Recommended Name: Ryanodine receptor 1  
Size: 5038 amino acids; 565176 Da
Subunit: Homotetramer. Can also form heterotetramers with RYR2. Interacts with CALM; CALM with bound calcium inhibits
the RYR1 channel activity. Interacts with S100A1. Interacts with FKBP1A; this stabilizes the closed conformation of
the channel. Interacts with CACNA1S; interaction with CACNA1S is important for activation of the RYR1 channel.
Interacts with CACNB1. Interacts with TRDN and ASPH; these interactions stimulate RYR1 channel activity (By
similarity). Identified in a complex composed of RYR1, PDE4D, PKA, FKBP1A and protein phosphatase 1 (PP1). Repeated
very high-level exercise decreases interaction with PDE4D and protein phosphatase 1 (PP1)
Subcellular location: Sarcoplasmic reticulum membrane; Multi-pass membrane protein. Membrane; Multi-pass membrane
protein (Probable). Note=The number of predicted transmembrane domains varies between orthologs, but both N-terminus
and C-terminus seem to be cytoplasmic
Miscellaneous: Channel activity is modulated by the alkaloid ryanodine that binds to the open Ca-release channel with
high affinity. At low concentrations, ryanodine maintains the channel in an open conformation. High ryanodine
concentrations inhibit channel activity. Channel activity is regulated by calmodulin (CALM). The calcium release is
activated by increased cytoplasmic calcium levels, by nitric oxyde (NO), caffeine and ATP. Channel activity is
inhibited by magnesium ions, possibly by competition for calcium binding sites (By similarity)
Miscellaneous: Coexpression of normal and mutant Thr-4898 RYR1 in a 1:1 ratio, produces RYR1 channels with normal
halothane and caffeine sensitivities, but maximal levels of Ca(2+) release are reduced by 67%. Binding of
[3H]ryanodine indicates that the heterozygous channel is activated by Ca(2+) concentrations 4-fold lower than normal.
Single-cell analysis of cotransfected cells shows a significantly increased resting cytoplasmic Ca(2+) level and a
significantly reduced luminal Ca(2+) level. These data indicated a leaky channel, possibly caused by a reduction in
the Ca(2+) concentration required for channel activation. Comparison with 2 other coexpressed mutant/normal channels
suggests that the Thr-4898 mutation produces one of the most abnormal RYR1 channels that has been investigated, and
this level of abnormality is reflected in the severe and penetrant phenotype of affected CCD individuals
Secondary accessions: Q16314 Q16368 Q9NPK1 Q9P1U4
Alternative splicing: 3 isoforms:  P21817-1   P21817-2   P21817-3   

Explore the universe of human proteins at neXtProt for RYR1: NX_P21817

Post-translational modifications:

  • Channel activity is modulated by phosphorylation. Phosphorylation at Ser-2843 may increase channel activity. Repeated
  • very high-level exercise increases phosphorylation at Ser-28431
  • Activated by reversible S-nitrosylation. Repeated very high-level exercise increases S-nitrosylation1
  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_P21817

  • RYR1 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (2 alternative transcripts): 
    NP_000531.2  NP_001036188.1  

    ENSEMBL proteins: 
     ENSP00000352608   ENSP00000347667   ENSP00000354254  
    Reactome Protein details: P21817
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    Uscn Proteins for RYR1

    Gene Ontology (GO): 5/14 cellular component terms (GO ID links to tree view) (see all 14):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005624membrane fraction ----
    GO:0005737cytoplasm IDA11206130
    GO:0005790smooth endoplasmic reticulum TAS2298749
    GO:0005886plasma membrane IDA11206130
    GO:0005887integral to plasma membrane TAS2298749


    RYR1 for ontologies           About GeneDecksing



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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    RYR1 for domains           About GeneDecksing

    5/14 InterPro domains/families (see all 14):
     IPR014821 Ins145_P3_rcpt
     IPR003032 Ryanodine_rcpt
     IPR001870 B30.2/SPRY
     IPR011992 EF-hand-like_dom
     IPR000699 Ca-rel_channel

    Graphical View of Domain Structure for InterPro Entry P21817

    ProtoNet protein and cluster: P21817

    5 Blocks protein families:
    IPB000699 Intracellular calcium-release channel
    IPB003608 MIR domain
    IPB009460 Ryanodine Receptor TM 4-6
    IPB013333 Ryanodine receptor signature
    IPB013662 RyR and IP3R Homology associated


    UniProtKB/Swiss-Prot: RYR1_HUMAN, P21817
    Domain: The calcium release channel activity resides in the C-terminal region while the remaining part of the protein
    constitutes the 'foot' structure spanning the junctional gap between the sarcoplasmic reticulum (SR) and the T-tubule
    (By similarity)
    Similarity: Belongs to the ryanodine receptor (TC 1.A.3.1) family. RYR1 subfamily
    Similarity: Contains 3 B30.2/SPRY domains
    Similarity: Contains 5 MIR domains


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: RYR1_HUMAN, P21817
    Function: Calcium channel that mediates the release of Ca(2+) from the sarcoplasmic reticulum into the cytoplasm and
    thereby plays a key role in triggering muscle contraction following depolarization of T-tubules. Repeated very
    high-level exercise increases the open probability of the channel and leads to Ca(2+) leaking into the cytoplasm. Can
    also mediate the release of Ca(2+) from intracellular stores in neurons, and may thereby promote prolonged Ca(2+)
    signaling in the brain. Required for normal embryonic development of muscle fibers and skeletal muscle. Required for
    normal heart morphogenesis, skin development and ossification during embryogenesis (By similarity)

         Genatlas biochemistry entry for RYR1:
    ryanodine receptor 1,controlling intracellular Ca2+ levels by releasing Ca2+ from the sarcoplasmic reticulum,expressed
    in skeletal and cardiac muscle,and involved in the control of cellular activities of B cells,triggered by the
    dehydrine receptor(s)

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    Gene Ontology (GO): 5/9 molecular function terms (GO ID links to tree view) (see all 9):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0002020protease binding IEA--
    GO:0004872receptor activity ----
    GO:0005219ryanodine-sensitive calcium-release channel activity TAS19095005
    GO:0005245voltage-gated calcium channel activity ISS--
    GO:0005262calcium channel activity ISS--


    RYR1 for ontologies           About GeneDecksing


    Animal Models:
         Mouse knock-outs for RYR1: Ryr1tm1Alle Ryr1tm1Tno
         15 MGI mutant phenotypes (inferred from 8 alleles(MGI details for Ryr1):
     adipose tissue  behavior/neurological  cardiovascular system  cellular  craniofacial 
     digestive/alimentary  growth/size  homeostasis/metabolism  integument  limbs/digits/tail 
     mortality/aging  muscle  other  respiratory system  skeleton 

    RYR1 for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/15 super-pathways (see all 15About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Activation of cAMP-Dependent PKA
    Activation of cAMP-Dependent PKA1.00
    Activation of PKA through GPCR0.71
    cAMP Pathway0.77
    PKA Signaling0.56
    2G Protein Signaling Pathways
    Signal transduction cAMP signaling0.44
    Signal transduction_PKA signaling0.23
    Signal transduction_cAMP signaling0.44
    Signal transduction PKA signaling0.23
    3Ion channel transport
    Ion channel transport1.00
    Stimuli-sensing channels0.49
    4Signal transduction Calcium signaling
    Signal transduction Calcium signaling1.00
    Signal transduction_Calcium signaling0.97
    5Calcium Regulation in the Cardiac Cell
    Calcium Regulation in the Cardiac Cell1.00
    Myometrial Relaxation and Contraction Pathways0.43

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    4 EMD Millipore Pathways for RYR1
        Signal transduction Calcium signaling
    G-protein signaling G-Protein alpha-s signaling cascades
    Signal transduction cAMP signaling
    Signal transduction PKA signaling

    5/9 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for RYR1 (see all 9)
        Activation of PKA through GPCR
    PKA Signaling
    Netrin Signaling
    Presenilin-Mediated Signaling
    nNOS Signaling in Skeletal Muscle

    1 Cell Signaling Technology (CST) Pathway for RYR1
        Ca, cAMP and Lipid Signaling

    4 GeneGo (Thomson Reuters) Pathways for RYR1
        G-protein signaling G-Protein alpha-s signaling cascades
    Signal transduction cAMP signaling
    Signal transduction PKA signaling
    Signal transduction Calcium signaling

    2 BioSystems Pathways for RYR1 
        Myometrial Relaxation and Contraction Pathways
    Calcium Regulation in the Cardiac Cell

    3        Reactome Pathways for RYR1
        Transmembrane transport of small molecules
    Stimuli-sensing channels
    Ion channel transport


    2         Kegg Pathways  (Kegg details for RYR1):
        Calcium signaling pathway
    Long-term depression


    RYR1 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for RYR1

    STRING Interaction Network Preview (showing 5 interactants - click image to see 23)

    5/52 Interacting proteins for RYR1 (P218171, 2, 3 ENSP000003526084) via UniProtKB, MINT, STRING, and/or I2D (see all 52)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    PLCG1P191742, 3, ENSP000002440074MINT-8112747 I2D: score=3 STRING: ENSP00000244007
    H2AFZP0C0S52, 3MINT-19797 I2D: score=1 
    CALM1P621583, ENSP000003494674I2D: score=1 STRING: ENSP00000349467
    CALM2P621583I2D: score=1 
    CALM3P621583I2D: score=1 
    About this table

    Gene Ontology (GO): 5/14 biological process terms (GO ID links to tree view) (see all 14):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0001666response to hypoxia IDA19120137
    GO:0003151outflow tract morphogenesis ISS--
    GO:0006816calcium ion transport ISS--
    GO:0006936muscle contraction ISS--
    GO:0014808release of sequestered calcium ion into cytosol by sarcoplasmic reticulum ISS--


    RYR1 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    RYR1 for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
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    Browse Tocris compounds for RYR1

    2 HMDB Compounds for RYR1    About this table
    CompoundSynonyms CAS #PubMed Ids
    CalciumCa (see all 2)7440-70-2--
    MagnesiumMagnesium (see all 2)7439-95-4--

    3 DrugBank Compounds for RYR1    About this table
    CompoundSynonyms CAS #TypeActionsPubMed Ids
    DantroleneDantrolene Sodium (see all 3)7261-97-4targetantagonist15023108 7488490 12167662 6704779 16945924 12666006 11752352 7362049 9924249
    CaffeineCafeina (see all 7)58-08-2target--17514358
    SuraminBayer 205 (see all 6)145-63-1targetagonist16056233

    10/98 Novoseek chemical compound relationships for RYR1 gene (see all 98)    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    ryanodine 98.3 1193 11226332 (5), 12151923 (4), 18353852 (4), 19802526 (4) (see all 99)
    4-chloro-m-cresol 90.6 79 12761215 (10), 16737973 (7), 16601083 (7), 11990295 (3) (see all 23)
    dihydropyridine 88.3 124 11179064 (4), 16302848 (2), 16357209 (2), 18556650 (2) (see all 71)
    calcium 84 1057 19767002 (8), 11964231 (6), 11232598 (5), 11741831 (5) (see all 99)
    pcb 95 83.8 5 19337518 (1)
    caffeine 83.7 109 12151923 (3), 11477079 (3), 11990295 (3), 11360934 (2) (see all 66)
    cyclic adp-ribose 81.2 77 7826401 (4), 12966165 (3), 7925959 (3), 17190906 (2) (see all 28)
    inositol 1,4,5 trisphosphate 78.2 43 18174159 (2), 12921667 (2), 15160398 (1), 15212806 (1) (see all 37)
    dantrolene 77.3 32 12167662 (3), 11585849 (2), 16945924 (2), 15160398 (1) (see all 21)
    ryanodol 76.3 2 10871634 (1), 11331348 (1)

    1 PharmGKB related drug/compound annotation for RYR1 gene
    Drug/compound PharmGKB Annotation
    hmg coa reductase inhibitorsCA  
    About this table

    Search CenterWatch for drugs/clinical trials and news about RYR1 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
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    About This Section

    REFSEQ mRNAs for RYR1 gene (2 alternative transcripts): 
    NM_000540.2  NM_001042723.1  

    Unigene Cluster for RYR1:

    Ryanodine receptor 1 (skeletal)
    Hs.466664  [show with all ESTs]
    Unigene Representative Sequence: NM_000540
    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000359596(uc002oit.3) ENST00000355481(uc002oiu.3) ENST00000360985(uc002oiv.1 uc010xuf.1)


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    Additional cDNA sequence: 

    AB209425.1 AF075460.1 AK293785.1 J05200.1 

    10 DOTS entries:

    DT.113052  DT.100019702  DT.121502810  DT.100748838  DT.121502805  DT.65286971  DT.75101790  DT.97788775 
    DT.40260655  DT.91978919 

    24/107 AceView cDNA sequences (see all 107):

    BE764184 BQ185433 BM805728 F34519 CB129444 BQ962760 F34300 AA808825 
    NM_000540 F31264 BQ189108 F15827 BG830167 CA427848 BE764223 F21877 
    F36856 AF075460 F00754 BE764204 BI457578 BI000785 BE764174 AI382958 

    GeneLoc Exon Structure

    5/8 Alternative Splicing Database (ASD) splice patterns (SP) for RYR1 (see all 8)    About this scheme

    ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21 ^ 22 ^ 23 ^ 24 ^ 25 ^ 26 ^
    SP1:                                                                                                                                                            
    SP2:                                                                                                                                                            
    SP3:                                                                                                                                                            
    SP4:                                                                                                                                                            
    SP5:                                                                                                                                                            

    ExUns: 27 ^ 28 ^ 29 ^ 30 ^ 31 ^ 32 ^ 33 ^ 34 ^ 35 ^ 36a · 36b ^ 37a · 37b ^ 38 ^ 39 ^ 40 ^ 41 ^ 42 ^ 43 ^ 44 ^ 45 ^ 46 ^ 47 ^ 48 ^ 49 ^ 50 ^
    SP1:                                                                          -                                                                                 
    SP2:                                                                                                                                                            
    SP3:                                                                                                                                                            
    SP4:                                                                                                                                                            
    SP5:                                                                                                                                                            

    ExUns: 51 ^ 52 ^ 53 ^ 54 ^ 55 ^ 56 ^ 57 ^ 58a · 58b ^ 59 ^ 60 ^ 61a · 61b · 61c ^ 62 ^ 63 ^ 64 ^ 65 ^ 66 ^ 67 ^ 68 ^ 69 ^ 70
    SP1:                                                                                                                                          
    SP2:                                                                                                                                          
    SP3:                                                                                                                                          
    SP4:                                                                                                                                          
    SP5:                                                                                                                                          


    ECgene alternative splicing isoforms for RYR1

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    RYR1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: TTTTTCCTGA

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image

    RYR1 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    1 LifeMap In Vivo Development Anatomical Compartment/Cell 
    Tissue Anatomical Compartment CellCategory (developmental path)
    AdiposeInterscapular Brown Adipose DepotAdipose
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See RYR1 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for RYR1

    SOURCE GeneReport for Unigene cluster: Hs.466664

    UniProtKB/Swiss-Prot: RYR1_HUMAN, P21817
    Tissue specificity: Skeletal muscle and brain (cerebellum and hippocampus)

        SABiosciences Custom PCR Arrays for RYR1
    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for RYR1
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat RYR1
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RYR1
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RYR1
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RYR1

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for RYR1 gene from 7/22 species (see all 22)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Ryr11 , 5 ryanodine receptor 1, skeletal muscle1, 5 88.55(n)1
    96.02(a)1
      7 (16.94 cM)5
    201901  NM_009109.21  NP_033135.21 
     290033405 
    lizard
    (Anolis carolinensis)
    Reptilia --
    --
    (see all 3)
    --
    86(a)
    84(a)
    (see all 3)
    many → 1
    many → 1
    (see all 3)
    GL343427.1(685880-727627)
    GL343427.1(594163-625539)
    tropical clawed frog
    (Xenopus tropicalis)
    Amphibia Str.133032 Transcribed sequence with strong similarity to protein more 85.53(n)    BX726845.1 
    zebrafish
    (Danio rerio)
    Actinopterygii ryr1b1 ryanodine receptor 1b (skeletal) 71.86(n)
    78(a)
      570245  NM_001102571.1  NP_001096041.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta Rya-r44F3 muscle contraction ryanodine-sensitive
    calcium-release more
    57(a)   44F2   --
    worm
    (Caenorhabditis elegans)
    Secernentea unc-683 ryanodine receptor 40(a)   V(6904616-6926793)   --
    wheat
    (Triticum aestivum)
    Liliopsida Ta.92692 Triticum aestivum transcribed sequence with weak similarity more 72.17(n)    BQ838200.1 


    ENSEMBL Gene Tree for RYR1 (if available)
    TreeFam Gene Tree for RYR1 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for RYR1 gene
    RYR22  ITPR32  ITPR22  ITPR12  RYR32  
    2 SIMAP similar genes for RYR1 using alignment to 11 protein entries:     RYR1_HUMAN (see all proteins):
    RYR3    RYR2

    RYR1 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    3652 NCBI SNPs in RYR1 are shown (see top 10    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 19 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1181921601,2
    Cnon-pathogenic38933001(+) CCCCCA/GATCTG 4 N D mis10--------
    rs1181921131,2
    Cnon-pathogenic38933035(+) GCAGTA/CCCTGT 4 Y S mis10--------
    rs1181921151,2
    Cnon-pathogenic38937124(+) GACGGA/GAGGTC 4 E G mis10--------
    rs1181921171,2
    Cnon-pathogenic38942486(+) CCGCAC/TGATCC 4 T M mis10--------
    rs1181921181,2
    Cnon-pathogenic38943494(+) GGGCTC/TGGGGC 4 S L mis10--------
    rs1181921191,2
    Cnon-pathogenic38945968(+) CAGCCA/GAGTCC 4 K E mis10--------
    rs1181921201,2
    Cnon-pathogenic38973951(+) CAGCCA/GCCATG 4 T A mis10--------
    rs1181921211,2
    Cnon-pathogenic38987550(+) TTGACA/CACAAT 4 N H mis10--------
    rs1181921241,2
    Cnon-pathogenic38991276(+) CCCTGC/TGGATC 4 R W mis10--------
    rs1181921231,2
    Cnon-pathogenic38991280(+) GCGGAC/TCCGCG 4 T I mis10--------
    rs1181921221,2
    Cnon-pathogenic38991283(+) GATCCA/GCGCCA 4 H R mis10--------
    rs1181921251,2
    Cnon-pathogenic38997592(+) TACAAA/GGCACG 4 K R mis10--------
    rs1181921261,2
    Cnon-pathogenic39009935(+) GCGCAA/GGAGGG 4 K R mis10--------
    rs1181921271,2
    Cnon-pathogenic39018417(+) CTACCC/TGGACC 4 P L mis10--------
    rs1181921291,2
    Cnon-pathogenic39055960(+) GGCGGA/CCACCG 4 D A mis10--------
    rs1181921301,2
    C,non-pathogenic39061260(+) GTCCCG/AGAACT 4 /Q /R mis11Minor allele frequency- A:0.00NA 4550
    rs1181921311,2
    Cnon-pathogenic39061290(+) TGCCCC/TCTTCT 4 P L mis10--------
    rs1181921321,2
    Cnon-pathogenic39062803(+) TGTACA/TACTTC 4 N Y mis10--------
    rs1181921331,2
    Cnon-pathogenic39062812(+) TCCTGA/GAGGAA 4 K E mis10--------
    rs1181921341,2
    Cnon-pathogenic39062822(+) AAGCAC/TAGGCT 4 T I mis10--------
    rs1181921361,2
    Cnon-pathogenic39062824(+) GCACAA/GGCTAC 4 S G mis10--------
    rs1181921351,2
    Cnon-pathogenic39062825(+) CACAGA/GCTACA 4 D G mis10--------
    rs1181921381,2
    Cnon-pathogenic39062861(+) CCTCCC/TGCATA 4 P L mis10--------
    rs1181921391,2
    Cnon-pathogenic39062864(+) CCTGCA/CTACAC 4 H P mis10--------
    rs1181921401,2
    C,non-pathogenic39063944(+) CAACAC/TGCCGT 4 T M mis10--------
    rs1181921411,2
    Cnon-pathogenic39066599(+) AGCGCA/CAGGTG 4 K Q mis10--------
    rs1181921421,2
    Cnon-pathogenic39070697(+) CCCATC/TTCCTG 4 L F mis10--------
    rs1181921431,2
    Cnon-pathogenic39071035(+) TCTGGC/TGGTGG 4 A V mis10--------
    rs1181921441,2
    Cnon-pathogenic39071070(+) CCTTCA/GACTTC 4 N D mis10--------
    rs1181921451,2
    Cnon-pathogenic39071076(+) ACTTC-/TTCCGCAA 2 -- cds10--------
    rs1181921461,2
    Cnon-pathogenic39071089(+) GTTCTA/GCAACA 4 Y C mis10--------
    rs1181921471,2
    Cnon-pathogenic39075595(+) TGTTTC/TACATG 4 H Y mis10--------
    rs1181921491,2
    Cnon-pathogenic39075607(+) ACGTGC/GGTGTC 4 R G mis10--------
    rs1181921511,2
    Cnon-pathogenic39075614(+) TGTCCA/C/GGGCTG 6 Q P R mis10--------
    rs1181921481,2
    Cnon-pathogenic39075626(+) CGGAGG/TCATTG 4 G V mis10--------
    rs1181921531,2
    Cnon-pathogenic39075653(+) CCCCGC/TGGGTG 4 A V mis11Minor allele frequency- T:0.00NA 4550
    rs1181921541,2
    Cnon-pathogenic39075677(+) CTACAC/GGGTGG 4 T R mis10--------
    rs1181921551,2
    Cnon-pathogenic39075695(+) CATCAA/CCTTCT 4 N T mis10--------
    rs1181921561,2
    Cnon-pathogenic39075698(+) CACCTC/TCTTCT 4 S F mis10--------
    rs1181921591,2
    Cnon-pathogenic39076588(+) ATCATC/GGACGC 4 I M mis10--------
    rs1181921581,2
    Cnon-pathogenic39076592(+) TCGACA/GCTTTT 4 T A mis10--------
    rs1181921731,2
    Cpathogenic38934252(+) TGCTCC/TGGCAT 4 R W mis10--------
    rs1181921161,2
    Cpathogenic38942490(+) ATGATC/GCACAG 4 I M mis10--------
    rs1181921621,2
    Cpathogenic38945999(+) TCTCTA/C/GTGAAC 6 Y S C mis10--------
    rs1181921631,2
    Cpathogenic38985205(+) GATCCA/C/GCTCGC 6 H P R mis10--------
    rs1181921741,2
    Cpathogenic38990601(+) CATCAA/TGTCCT 4 K M mis10--------
    rs289333961,2
    Cpathogenic38990637(+) CGGACA/G/TCTGTG 6 H R L mis1 ese32NA 4
    rs1181921781,2
    Cpathogenic38991538(+) TGGACC/G/TGTGTG 6 R G C mis10--------
    rs1181921641,2
    Cpathogenic39016095(+) GTGCGC/TCCACC 4 P S mis10--------
    rs1181921651,2
    Cpathogenic39055614(+) CCAAG-/CGC   
      CAGTTC
    ATCTT
    2 -- cds10--------
    rs1181921661,2
    Cpathogenic39062821(+) AAAGCA/GCAGGC 4 T A mis10--------
    rs1181921791,2
    Cpathogenic39070635(+) GTACCC/TGGGCT 4 P L mis10--------
    rs1181921671,2
    Cpathogenic39070644(+) CTGGTA/GTATGG 4 Y C mis10--------
    rs1181921801,2
    Cpathogenic39070730(+) CGCTGC/TGCACC 4 R C mis10--------
    rs1181921681,2
    Cpathogenic39071043(+) TGGTCA/GTCTAC 4 I V mis10--------
    rs1181921811,2
    Cpathogenic39071079(+) TCTTCC/TGCAAG 4 R C mis10--------
    rs637498691,2
    Cpathogenic39071080(+) CTTCCA/GCAAGT 4 H R mis10--------
    rs1181921501,2
    Cpathogenic39075613(+) GTGTCC/G/TGGGCT 6 R G W mis10--------
    rs1181921701,2
    Cpathogenic39075629(+) AGGCAC/TTGGGG 4 T I mis10--------
    rs1181921831,2
    Cpathogenic39075632(+) CATTGA/GGGACG 4 E G mis10--------
    rs1181921841,2
    Cpathogenic39075676(+) TCTACA/GGGGTG 4 R G mis10--------
    rs1182044221,2
    Cprobable-pathogenic39034456(+) GCCTAC/TGGGAC 4 R W mis10--------
    rs14696961,2
    Cuntested35439819(+) aggggC/Gaggag 1 -- int1 trp31Minor allele frequency- G:0.00NA 2
    rs46322591,2
    C,F,A,H,untested38924362(+) TCTGGT/CGTCTC 2 -- ut51 ese315Minor allele frequency- C:0.07NS EA NA CSA WA 1850
    rs1939227441,2
    Cuntested38924507(+) GTTCCG/TGCGGA 4 R L mis10--------
    rs9197811,2
    C,F,H,untested38924814(+) CCATCC/TTGGAA 2 -- int127Minor allele frequency- T:0.20MN NS EA NA WA CSA 2539
    rs1391617231,2
    Cuntested38931470(+) CAACCG/ACCTGT 4 /H /R mis11Minor allele frequency- A:0.00NA 3862
    rs23041451,2
    C,F,H,untested38931578(+) GAAGAC/GGGTTC 2 -- int1 trp310Minor allele frequency- N:0.01EA NA NS 2112
    rs8920541,2
    C,F,A,H,untested38935259(+) GTTGAC/TGCTTC 4 D syn1 ese317Minor allele frequency- T:0.01NA EA NS EU 7385
    rs22291391,2
    C,F,O,H,untested38935280(+) ACACTG/ATGGAA 4 /L syn126Minor allele frequency- A:0.41NS EA NA WA CSA EU 8194
    rs1125966871,2
    Cuntested38937157(+) ACATAA/TGGATG 4 K M mis10--------
    rs18010861,2
    Cuntested38937350(+) ATGAGA/C/GGGGGA 6 R G mis11NA 2
    rs22291401,2
    C,F,H,untested38939067(+) CTAGCG/ACTCAC 4 /A syn1 ese39Minor allele frequency- A:0.01MN NS NA 5354
    rs1939227611,2
    C,untested38939141(+) CTTCCA/G/TCATCT 6 H R L mis10--------
    rs81015101,2
    C,Auntested38939345(+) GAGATA/CAAGTA 4 I syn10--------
    rs1133320731,2
    Cuntested38939431(+) CCTGCA/G/TGCTCG 6 Q R L mis10--------
    rs81017241,2
    C,Auntested38939497(+) agaatC/Tgcttg 2 -- int10--------
    rs44762781,2
    C,H,untested38939505(+) TTGAGC/TCCAGG 2 -- int111Minor allele frequency- T:0.02NA WA CSA EA 374
    rs81025241,2
    C,Auntested38939548(+) cactgC/Tactcc 2 -- int10--------
    rs37458451,2
    C,F,untested38942393(+) GTCTCC/TCCACT 2 -- int11Minor allele frequency- T:0.02EA 1492
    rs1939227641,2
    Cuntested38942482(+) CCGCCC/G/TGCATG 6 R G C mis10--------
    rs37458461,2
    C,F,untested38942499(+) AGCACC/TAATGG 4 T syn1 ese31Minor allele frequency- T:0.01EA 1492
    rs124607681,2
    C,F,A,H,untested38943728(+) ACGGCA/GCTGGG 2 -- int110Minor allele frequency- G:0.33NA WA CSA EA 373
    rs72548321,2
    C,F,H,untested38945851(+) TGTGAC/TGCCTC 2 -- int138Minor allele frequency- T:0.10NA NS EA WA CSA EU 4665
    rs1477238441,2
    C,F,untested38945887(+) TCTCCA/GTGGTC 4 M V mis12Minor allele frequency- G:0.00NA EU 5875
    rs1118881481,2
    Cuntested38946103(+) AATCCA/GTGGCA 4 H R mis10--------
    rs1443361481,2
    Cuntested38946112(+) CAATCG/ATAGCA 4 /H /R mis11Minor allele frequency- A:0.00NA 4552
    rs22888881,2
    C,F,A,H,untested38946182(+) GCCTCA/GTCTGG 4 S syn1 ese335Minor allele frequency- G:0.37EA NA NS WA CSA EU 10387
    rs20710851,2
    C,F,O,H,untested38948356(+) TGTCCC/TTTCCT 2 -- int1 trp328Minor allele frequency- T:0.38NS EA NA WA CSA 2746
    rs1461048581,2
    C,F,untested38948886(+) GTCGGC/AGATGA 4 /G syn12Minor allele frequency- A:0.00NA EU 5855
    rs20710861,2
    C,F,untested38948963(+) TCACCC/GCTGAC 2 -- int17Minor allele frequency- G:0.23EA NA CSA WA EU 3175
    rs48024741,2
    C,F,A,H,untested38949729(+) TCTTGG/TTATCA 2 -- int137Minor allele frequency- T:0.40EA NA NS WA CSA 3416
    rs1508310551,2
    C,untested38949841(+) GAAGAC/TGTGAT 4 D syn11Minor allele frequency- T:0.00NA 4552
    rs37458471,2
    C,F,H,untested38949904(+) TGCCCT/CGTGCA 4 /P syn1 ese319Minor allele frequency- C:0.38NA NS WA CSA EA EU 6548
    rs23041471,2
    C,F,H,untested38950947(+) CATGTT/CCCCCA 2 -- int123Minor allele frequency- C:0.37EA NS NA WA CSA 3844
    rs23041491,2
    C,F,H,untested38954040(+) GGTCTC/GAAGAA 2 -- int18Minor allele frequency- G:0.06EA NA NS 1806
    rs1393395741,2
    C,untested38954416(+) CACCCG/ATGTCT 4 /P syn11Minor allele frequency- A:0.00NA 4552
    rs22280691,2
    C,F,H,untested38956803(+) CAGACA/C/GACACT 6 T syn1 ese335MN NA NS EA WA CSA EU 7801
    rs22280701,2
    C,F,A,H,untested38956839(+) CACAAC/TGTGTG 4 N syn127Minor allele frequency- T:0.21MN EA NA NS WA CSA EU 9185
    rs1807146091,2
    C,untested38956856(+) AGACCA/GCGTGG 4 H R mis10--------
    rs22280741,2
    C,F,untested38956902(+) CCAGCG/ACGCCG 4 /A syn1 ese32Minor allele frequency- A:0.01MN NA 4408
    rs1112720951,2
    Cuntested38956987(+) CCGTGC/TGCACC 4 R C mis10--------
    rs72580751,2
    C,F,A,H,untested38959196(+) ATCCAT/GCTATC 2 -- int129Minor allele frequency- G:0.11NS EA NA WA 3292
    rs110834621,2
    C,F,A,H,untested38959680(+) ATGATC/TGACCT 4 I syn140Minor allele frequency- T:0.40NA NS EA WA CSA EU 9158
    rs37458501,2
    C,F,untested38959871(+) CCATCC/TCTACC 2 -- int12Minor allele frequency- T:0.04EA 1616
    rs346948161,2
    C,F,untested38964275(+) GCTGGA/GGCGAG 4 S G mis14Minor allele frequency- G:0.12NA WA 196
    rs118826401,2
    C,F,A,H,untested38964358(+) CAGCCC/TGCCAG 4 P syn1 ese310Minor allele frequency- T:0.07NS NA WA 1158
    rs72585031,2
    C,F,H,untested38968539(+) GAGGTG/ACAGGG 2 -- int16Minor allele frequency- A:0.06NS EA CSA WA 538
    rs354808871,2
    C,F,untested38973941(+) ATGCCG/ATTGTC 4 /P syn12Minor allele frequency- A:0.01NA 2838
    rs349349201,2
    C,F,untested38976655(+) TCTGCC/TAGCTG 4 P L mis16Minor allele frequency- T:0.01NA EU 5469
    rs22280681,2
    C,F,O,H,untested38981284(+) TTCAAA/GGATGG 4 K syn123Minor allele frequency- G:0.08MN NA NS EA WA EU 8311
    rs353643741,2
    C,F,untested38983180(+) CCCTGG/TGCAGC 4 G C mis16Minor allele frequency- T:0.06NA EU 6053
    rs116659701,2
    C,Huntested38983331(+) CATGCC/TTGCGG 2 -- int14Minor allele frequency- T:0.00NS EA 418
    rs1178866181,2
    C,untested38985104(+) TACGAC/G/TGGGCT 6 D E mis1 syn12EA EU 1401
    rs1416466421,2
    C,F,untested38986918(+) ATGCAC/G/TGAGAC 6 H Q mis1 syn11NA 4552
    rs1939227931,2
    Cuntested38986941(+) CATGGA/C/TCAACG 6 D A V mis10--------
    rs343903451,2
    C,F,untested38989817(+) CAGACA/GTTGGC 4 I V mis15Minor allele frequency- G:0.00NA EU 5943
    rs1125635131,2
    Cuntested38989863(+) CCTGCA/GCTTTG 4 H R mis10--------
    rs1472138951,2
    C,F,untested38989881(+) CGTCAA/GCGGTG 4 N S mis12Minor allele frequency- G:0.00NA EU 5869
    rs37458511,2
    C,untested38989910(+) CAGAGC/TGGGAA 2 -- int10--------
    rs37458521,2
    C,F,H,untested38989946(+) CCCTCG/AAGATG 2 -- int19Minor allele frequency- A:0.04NS EA NA 1028
    rs22280711,2
    C,F,untested38990336(+) GAGTGC/TTTCGG 4 C syn17Minor allele frequency- T:0.06MN NA WA EA EU 5353
    rs22291471,2
    C,F,H,untested38990345(+) GGACCC/TGCCCT 4 P syn1 ese323Minor allele frequency- T:0.10MN NS EA NA WA EU 7219
    rs1463069341,2
    Cuntested38990346(+) GACCCG/ACCCTG 4 /T /A mis11Minor allele frequency- A:0.00NA 4274
    rs1394982121,2
    Cuntested38990349(+) CCGCCC/TTGCGG 4 L syn11Minor allele frequency- T:0.00NA 4264
    rs787951781,2
    C,F,untested38990456(+) CGGCGC/TGAGCA 4 R syn12Minor allele frequency- T:0.01EA NA 3372
    rs129736321,2
    C,F,untested38990593(+) GGACAC/TGCCAT 4 H syn1 ese37Minor allele frequency- T:0.03NS NA EU 5969
    rs1939228101,2
    Cuntested38990624(+) TGATCA/G/TACCTG 6 N D Y mis10--------
    rs22347091,2
    C,untested38990676(+) CAGGGC/AAGGAT 2 -- int14Minor allele frequency- A:0.05NA WA EA 360
    rs129811751,2
    Cuntested38991227(+) CCTCTC/TCCTCC 2 -- int1 trp30--------
    rs1939228171,2
    Cuntested38991503(+) CGTGCC/TGGACC 4 P L mis11Minor allele frequency- T:0.00EU 1253
    rs22280721,2
    C,F,untested38991516(+) AAGGCA/G/TTCCAT 6 A syn1 ese311MN NA WA CSA EA EU 6308
    rs20710881,2
    C,F,H,untested38991543(+) CGTGTG/ATATGG 4 /V syn1 ese323Minor allele frequency- A:0.10MN NA NS EA CSA WA EU 8251
    rs14656981,2
    C,F,untested38991600(+) CTGCCC/TGACAT 4 P syn1 ese36Minor allele frequency- G:0.00MN NA WA EA EU 5695
    rs29603231,2
    C,F,A,H,untested38991640(+) GCAACC/GCTGCC 2 -- int111Minor allele frequency- G:0.19NA WA CSA EA EU 1070
    rs1939228221,2
    Cuntested38993303(+) TGTCTC/G/TGGGGT 6 R G W mis10--------
    rs14696951,2
    C,F,A,untested38993372(+) GGTGGA/GGCGGG 2 -- int16Minor allele frequency- G:0.24NA WA EA EU 926
    rs14696971,2
    C,Funtested38993454(+) ggaggG/Agcagg 2 -- int1 trp32Minor allele frequency- A:0.50NA 4
    rs22291421,2
    C,F,untested38993547(+) CAGCAC/TCTGTT 4 H syn111Minor allele frequency- T:0.16MN WA NA CSA EA EU 6279
    rs14696981,2
    C,F,A,untested38993556(+) TTGCGC/G/TCGCCT 6 R syn1 ese311MN NA WA CSA EU 6343
    rs14696991,2
    C,F,A,untested38993638(+) ATCTCA/GTTTCC 2 -- int117Minor allele frequency- G:0.34MN NA EA WA CSA 923
    rs29603401,2
    C,F,A,H,untested38995438(+) GCCATT/CGCCGG 4 /I syn125Minor allele frequency- C:0.34NS EA NA WA CSA EU 8264
    rs1121966441,2
    Cuntested38995509(+) AGTGGA/GTGCTG 4 D G mis10--------
    rs29159511,2
    C,F,A,H,untested38995510(+) GTGGAT/CGCTGA 4 /D syn1 ese325Minor allele frequency- C:0.34NA NS EA WA CSA EU 8258
    rs38299761,2
    C,untested38995819(+) ACCCCC/GCAGCC 2 -- int10--------
    rs29159521,2
    C,F,untested38995975(+) GGAGAG/AAACAT 4 /E syn114Minor allele frequency- A:0.30NA WA CSA EA EU 6150
    rs29159531,2
    C,F,untested38996066(+) CATTGA/GGGGTC 2 -- int18Minor allele frequency- G:0.30NA WA CSA EA 367
    rs29603411,2
    C,F,untested38996099(+) GGATTC/TGGGGA 2 -- int15Minor allele frequency- T:0.10NA WA 244
    rs29603421,2
    C,F,A,H,untested38996620(+) GGGCAC/TGATGG 2 -- int110Minor allele frequency- T:0.24NA WA CSA EA EU 780
    rs29603431,2
    C,F,A,H,untested38996623(+) CACGAT/GGGGGG 2 -- int19Minor allele frequency- G:0.25NA WA CSA EA EU 778
    rs29159541,2
    C,F,A,H,untested38996640(+) CTAGAA/GCAAGG 2 -- int111Minor allele frequency- G:0.31EA NA WA CSA 551
    rs22291461,2
    C,F,A,H,untested38996990(+) CTTAGT/CGCTGT 4 /S syn1 ese326Minor allele frequency- C:0.33MN NS EA NA WA CSA EU 8228
    rs1127723101,2
    Cuntested38997132(+) TGGCAA/GAAAAT 4 K E mis10--------
    rs29603451,2
    C,F,A,untested38997214(+) CACGCT/GACCCC 2 -- int111Minor allele frequency- G:0.30WA NA CSA EA 375
    rs29159581,2
    C,F,untested38997459(+) TCTTTG/CCCTCC 2 -- int112Minor allele frequency- C:0.26NA WA CSA EA EU 1464
    rs29159591,2
    C,F,A,untested38997609(+) GGGGCT/ACCCGC 2 -- int19Minor allele frequency- A:0.24NA CSA WA EA EU 1285
    rs29603461,2
    C,F,untested38997635(+) AGAACA/CCACCC 2 -- int110Minor allele frequency- C:0.23NA WA CSA EA EU 1042
    rs29603361,2
    C,F,H,untested39002140(+) GTCCTC/TGTCTC 2 -- int119Minor allele frequency- T:0.11NS EA NA WA CSA 2344
    rs29603381,2
    C,F,A,H,untested39002691(+) CCCCCC/TGGCCC 2 -- int119Minor allele frequency- T:0.14NS EA NA WA CSA EU 3323
    rs20710891,2
    C,F,O,A,H,untested39002725(+) GCCCCA/GGCTGT 4 P syn1 ese331Minor allele frequency- G:0.33EA MN NA NS WA CSA EU 9777
    rs29159421,2
    C,F,A,H,untested39005937(+) GAGCCG/TCCAGG 2 -- int119Minor allele frequency- T:0.15NS EA NA WA 1754
    rs29603281,2
    C,F,H,untested39006714(-) ACGGGG/ACTGTG 2 -- int16Minor allele frequency- A:0.06NS EA WA 538
    rs23041511,2
    C,F,untested39008003(+) GTCCTG/AGGGCT 4 /L syn15Minor allele frequency- A:0.05WA NA EA EU 5530
    rs1379321991,2
    C,F,untested39009932(+) GCTGCG/ACAAGA 4 /H /R mis11Minor allele frequency- A:0.00NA 4510
    rs22291451,2
    C,F,H,untested39010023(+) CGGGAC/TGAGTT 4 D syn1 ese314Minor allele frequency- T:0.04MN NS NA EU 5113
    rs412743301,2
    C,F,untested39010053(+) CTCTAC/TGCCCT 4 Y syn16Minor allele frequency- T:0.03NA NS EA EU 4371
    rs23041521,2
    C,F,H,untested39013815(+) GCGCCT/GGCCTT 2 -- int17Minor allele frequency- G:0.01EA NS NA 1986
    rs20710901,2
    C,F,O,H,untested39015454(+) TTGGTT/CTTGGG 2 -- int132Minor allele frequency- C:0.19EA NA NS CSA WA 4832
    rs1439878571,2
    C,F,untested39016132(+) GACCCG/ATTACG 4 /H /R mis12Minor allele frequency- A:0.00NA EU 5619
    rs22544841,2
    C,F,A,untested39017378(+) ACCCTT/CTGCCT 2 -- int113Minor allele frequency- C:0.31EA NA WA CSA 1870
    rs29603541,2
    C,F,H,untested39018280(-) TGAAGG/AGAGGA 2 -- int1 trp319Minor allele frequency- A:0.12NS EA NA WA CSA EU 3055
    rs558762731,2
    C,F,untested39018347(+) GTCGCG/CAGGAG 4 /Q /E mis12Minor allele frequency- C:0.01NA EU 5575
    rs9086441,2
    C,F,A,H,untested39018728(+) CCTGGC/GTCGTG 2 -- int121Minor allele frequency- G:0.19MN NS EA NA WA CSA 1576
    rs29450491,2
    C,untested39019097(+) GCTGCG/AGAGAA 2 -- int1 trp32Minor allele frequency- A:0.12WA 120
    rs48025841,2
    C,F,A,H,untested39025366(+) AGAAAC/GAGATG 4 Q E mis1 ese311Minor allele frequency- G:0.01NS EA NA CSA EU 6244
    rs1406163591,2
    Cuntested39026638(+) TCAGCG/ATCCTG 4 /I /V mis11Minor allele frequency- A:0.00NA 4538
    rs1425180331,2
    C,F,untested39026667(+) AGACAG/AAACAA 4 /Q syn12Minor allele frequency- A:0.02NA EU 5805
    rs129797691,2
    Cuntested39026723(+) CCTCCC/TTTGGG 2 -- int10--------
    rs129797841,2
    Cuntested39026753(+) TCTTCC/TTTTGG 2 -- int10--------
    rs1483993131,2
    Cuntested39034005(+) CCTACG/AGACAC 4 /Q /R mis11Minor allele frequency- A:0.00NA 4552
    rs456130411,2
    C,F,untested39034051(+) TGCACT/AGTGGA 4 /T syn14Minor allele frequency- A:0.01CSA EA NA EU 5996
    rs1471363391,2
    C,F,untested39034191(+) CTTCTA/GCTGGT 4 Y C mis11Minor allele frequency- G:0.00NA 4548
    rs22927971,2
    C,F,untested39034386(+) TTCCCC/GCCCAC 2 -- int1 trp31Minor allele frequency- G:0.01EU 577
    rs22927981,2
    C,F,untested39034388(+) CCCCCC/TCACAC 2 -- int1 trp31Minor allele frequency- T:0.01EU 579
    rs22927991,2
    C,F,untested39034397(+) ACGGCA/GCTCTG 2 -- int12Minor allele frequency- G:0.01CSA EU 560
    rs29450461,2
    C,F,A,untested39038744(+) CTGTGG/CAGGGG 2 -- int1 trp310Minor allele frequency- C:0.16NA WA CSA 431
    rs1446857351,2
    Cuntested39038899(+) TCGCCC/TGGCAG 4 R W mis11Minor allele frequency- T:0.00NA 4552
    rs29603391,2
    C,F,A,H,untested39053691(+) ACTCAT/CTCTTT 2 -- int131Minor allele frequency- C:0.43NA EA NS WA CSA 3133
    rs1135791851,2
    C,untested39056291(+) GTGGCC/TGTGAC 4 A syn11Minor allele frequency- T:0.50NA 2
    rs29603191,2
    C,F,H,untested39057616(+) GAGCCG/AGAGAA 4 /P syn1 ese39Minor allele frequency- A:0.03NS EA NA WA 3980
    rs104052611,2
    C,F,H,untested39057704(+) TCAGGC/TCCCAA 2 -- int14Minor allele frequency- T:0.01NS EA 406
    rs23022961,2
    C,H,untested39058515(+) GGAGGC/TGAATT 4 G syn15Minor allele frequency- T:0.02EA NS 1906
    rs359592061,2
    C,F,untested39061258(+) CTGTCC/GCGGAA 4 S syn15Minor allele frequency- G:0.04NA EU 6074
    rs14685711,2
    C,F,A,H,untested39068641(+) ATCACA/CGCCCA 4 T syn1 ese330Minor allele frequency- N:0.00EA MN NS NA WA CSA EU 10056
    rs1439884121,2
    Cuntested39070706(+) TGGACA/G/TTCGCC 6 I V F mis11NA 4552
    rs1132109531,2
    Cuntested39071125(+) CATGAA/GGTGTG 4 K R mis10--------
    rs75075181,2
    C,Huntested39075523(+) GGGGCC/TTTGGC 2 -- int14Minor allele frequency- T:0.00NS EA 418
    rs1939228881,2
    Cuntested39075616(+) TCCGGA/C/GCTGGC 6 T P A mis10--------
    rs23022971,2
    C,H,untested39076754(+) GGAATC/AGGCAG 4 /I syn1 ese35Minor allele frequency- A:0.01EA NS 1166
    rs1468761451,2
    Cuntested39076780(+) GACACC/TGCATG 4 P L mis11Minor allele frequency- T:0.00NA 4550
    rs1219185921,2
    Cother38939352(+) AGTACA/C/GGGGAG 6 R G mis10--------
    rs1181921721,2
    Cother38948185(+) CTGTAC/TGCTCC 4 R C mis11Minor allele frequency- T:0.00EU 1323
    rs1181921751,2
    Cother38985204(+) AGATCC/TGCTCG 4 R C mis10--------
    rs1181921761,2
    Cother38985219(+) TCATCA/GTGCAG 4 M V mis10--------
    rs1181921771,2
    Cother38986923(+) CGAGAC/G/TGGTCA 6 T R M mis10--------
    rs1219185931,2
    Cother38990633(+) TGCTCA/GGACGC 4 R G mis10--------
    rs289333971,2
    Cother38991294(+) TCCTCC/TGCTCC 4 R C mis1 ese32Minor allele frequency- T:0.00NA 4
    rs1219185941,2
    Cother38991295(+) CCTCCA/GCTCCC 4 H R mis10--------
    rs1939228261,2
    Cother38994959(+) TCACAC/TGGAAA 4 R W mis10--------
    rs351805841,2
    C,F,other38995998(+) GAAGAC/GCCACC 4 T S mis16Minor allele frequency- G:0.01NA WA EU 5941
    rs1939228471,2
    Cother39051805(+) GCTTTC/TGTGCT 4 S L mis10--------
    rs1414447451,2
    Cother39058501(+) AGAAGG/AAGGAA 4 /K /E mis11Minor allele frequency- A:0.00NA 4536
    rs1219185951,2
    Cother39070734(+) GCGCAC/TCATCC 4 T I mis10--------
    rs37458431,2
    C,F,H,--35381381(+) GGGCGG/AGGTGG 1 -- int18Minor allele frequency- A:0.24EA NS WA NA 2278
    rs758281531,2
    F--35505350(+) AAAAAG/AGGAAA 1 -- int11Minor allele frequency- A:0.50NA 4
    rs761245851,2
    F,--38922476(+) TTTAGG/CGAAAA 2 -- us2k13Minor allele frequency- C:0.08WA NA EA 358
    rs1417641621,2
    --38922724(+) TTCTAC/TGTAAT 2 -- us2k10--------
    rs1910906281,2
    --38922727(+) TATGTA/CATTTT 2 -- us2k10--------
    rs1470769351,2
    --38922733(+) ATTTTC/GTTTAA 2 -- us2k10--------
    rs284834821,2
    --38922796(+) AAAAAA/TTTTTT 2 -- us2k1 trp30--------
    rs1481795981,2
    --38922903(+) GATTCC/TTGTTC 2 -- us2k10--------
    rs1836430511,2
    --38923014(+) GGTCTC/TAAATT 2 -- us2k10--------
    rs1410930711,2
    --38923044(+) TCTGCC/TTTGGC 2 -- us2k10--------
    rs1149084561,2
    C,--38923121(+) TGGACA/GTGGTG 2 -- us2k10--------
    rs1405643581,2
    --38923394(+) TCTCA-/AAAT  
            
    AAATA
    2 -- us2k10--------
    rs1496022841,2
    C,--38923415(+) AAATA-/AATAATAA 2 -- us2k10--------
    rs1387019471,2
    --38923450(+) TTAACC/TAGGCA 2 -- us2k10--------
    rs2005316781,2
    --38923460(+) ACTGG-/CACTGTT 2 -- us2k10--------
    rs783690221,2
    C--38923461(+) CTGGCA/TCTGTT 2 -- us2k10--------
    rs765290061,2
    C--38923462(+) TGGCAC/GTGTTT 2 -- us2k10--------
    rs2016688931,2
    --38923463(+) GCACT-/GGTTTT 2 -- us2k10--------
    rs1896261341,2
    --38923478(+) TTTATC/TTCATT 2 -- us2k10--------
    rs1821037711,2
    --38923502(+) CATTTA/TACTCT 2 -- us2k10--------
    rs81070271,2
    C,F,H,--38923607(+) CAAGGG/AAGTGG 2 -- us2k123Minor allele frequency- A:0.01NS EA NA WA CSA 1770
    rs2013990531,2
    C--38923669(+) TTGTTC/TTNNNN 2 -- us2k10--------
    rs1419205151,2
    --38923804(+) GCTGGC/GATTAC 2 -- us2k10--------
    rs1463353821,2
    --38923886(+) GCTGGC/TCTCGA 2 -- us2k10--------
    rs1858094261,2
    --38923908(+) CAAGTG/TATCCA 2 -- us2k10--------
    rs1382705201,2
    --38923922(+) ACCTCA/GGCGTC 2 -- us2k10--------
    rs1899367861,2
    --38923925(+) TCGGCA/GTCCCA 2 -- us2k10--------
    rs1816505071,2
    --38924014(+) AAGTCA/GGGAGA 2 -- us2k10--------
    rs767513921,2
    F,--38924039(+) CTGCTC/ATGCTG 2 -- us2k11Minor allele frequency- A:0.08WA 118
    rs1426109321,2
    --38924068(+) CTTCCC/TCACTC 2 -- us2k10--------
    rs129789421,2
    C,H--38924088(+) GTCTGC/GCCTCT 2 -- us2k14Minor allele frequency- G:0.00NS EA 412
    rs1855954661,2
    --38924127(+) TTACCA/GTGGTG 2 -- us2k10--------
    rs1146725991,2
    F,--38924156(+) CTCCTA/GGATAC 2 -- us2k11Minor allele frequency- G:0.03WA 118
    rs72568431,2
    C,F,A,H,--38924172(+) CTCCCA/TCCCCA 2 -- us2k1 tfbs36Minor allele frequency- T:0.02NS EA NA WA 420
    rs1902599531,2
    --38924368(+) GTCTCC/TAGAGG 2 -- ut510--------
    rs2006655591,2
    --38924509(+) TCCTGC/TGGACG 4 R W mis10--------
    rs2001176231,2
    --38924514(+) CGGACA/GGTGCG 4 T syn10--------
    rs2018465381,2
    --38924537(+) AGGGGC/GCTGTG 2 -- int10--------
    rs1422075221,2
    C,--38924546(+) TGGGGA/CTATCT 2 -- int10--------
    rs799126701,2
    C,F,--38924635(+) TTCCTA/GTGTCA 2 -- int13Minor allele frequency- G:0.11CSA WA 124
    rs1998964641,2
    --38924708(+) GGATT-/GGGGGA 2 -- int10--------
    rs1807060891,2
    --38924856(+) TGGGCC/TTGATT 2 -- int10--------
    rs1507901671,2
    --38924963(+) GGACAC/TAGCTG 2 -- int10--------
    rs783715111,2
    C,--38924996(+) GGTCTT/CGTGGG 2 -- int13Minor allele frequency- C:0.15CSA WA NA 240
    rs1390489611,2
    --38925007(+) GGAGGA/GATCTC 2 -- int10--------
    rs713568051,2
    C,F,--38925079(+) CTAATG/CGTCTT 2 -- int13Minor allele frequency- C:0.05NA 124
    rs1173796621,2
    C,F,--38925116(+) CCATCT/CGTCTC 2 -- int11Minor allele frequency- C:0.03NA 120
    rs129728951,2
    C,--38925353(+) GGCTGC/TCATCT 2 -- int15Minor allele frequency- T:0.04NA WA 422
    rs1118108611,2
    --38925714(+) GGCCAC/TGGCCA 2 -- int11Minor allele frequency- T:0.00CSA 1
    rs1175925451,2
    F,--38925715(+) GCCATG/AGCCAC 2 -- int11Minor allele frequency- A:0.06EA 120
    rs1153467691,2
    F,--38925868(+) CCGAAT/CGGTAG 2 -- int11Minor allele frequency- C:0.06WA 118
    rs730449641,2
    C,F,--38925900(+) GCCAGG/AAAGTG 2 -- int11Minor allele frequency- A:0.04NA 120
    rs1859365141,2