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Aliases for RYK Gene

Aliases for RYK Gene

  • Receptor-Like Tyrosine Kinase 2 3
  • JTK5A Protein Tyrosine Kinase 2 3
  • EC 2.7.10.1 4 63
  • JTK5A 3 4
  • RYK1 3 6
  • RYK Receptor-Like Tyrosine Kinase 2
  • Tyrosine-Protein Kinase RYK 3
  • Hydroxyaryl-Protein Kinase 3
  • EC 2.7.10 63
  • D3S3195 3
  • JTK5 3

External Ids for RYK Gene

Previous HGNC Symbols for RYK Gene

  • JTK5A

Previous GeneCards Identifiers for RYK Gene

  • GC03P130793
  • GC03M134620
  • GC03M135157
  • GC03M135197
  • GC03M135196
  • GC03M135358
  • GC03M133794
  • GC03M131254

Summaries for RYK Gene

Entrez Gene Summary for RYK Gene

  • The protein encoded by this gene is an atypical member of the family of growth factor receptor protein tyrosine kinases, differing from other members at a number of conserved residues in the activation and nucleotide binding domains. This gene product belongs to a subfamily whose members do not appear to be regulated by phosphorylation in the activation segment. It has been suggested that mediation of biological activity by recruitment of a signaling-competent auxiliary protein may occur through an as yet uncharacterized mechanism. The encoded protein has a leucine-rich extracellular domain with a WIF-type Wnt binding region, a single transmembrane domain, and an intracellular tyrosine kinase domain. This protein is involved in stimulating Wnt signaling pathways such as the regulation of axon pathfinding. Alternative splicing results in multiple transcript variants encoding distinct isoforms. [provided by RefSeq, Feb 2012]

GeneCards Summary for RYK Gene

RYK (Receptor-Like Tyrosine Kinase) is a Protein Coding gene. Among its related pathways are GPCR Pathway and Signaling by GPCR. GO annotations related to this gene include transmembrane signaling receptor activity and frizzled binding. An important paralog of this gene is MET.

UniProtKB/Swiss-Prot for RYK Gene

  • May be a coreceptor along with FZD8 of Wnt proteins, such as WNT1, WNT3, WNT3A and WNT5A. Involved in neuron differentiation, axon guidance, corpus callosum establishment and neurite outgrowth. In response to WNT3 stimulation, receptor C-terminal cleavage occurs in its transmembrane region and allows the C-terminal intracellular product to translocate from the cytoplasm to the nucleus where it plays a crucial role in neuronal development.

Gene Wiki entry for RYK Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RYK Gene

Genomics for RYK Gene

Regulatory Elements for RYK Gene

Genomic Location for RYK Gene

Start:
134,065,303 bp from pter
End:
134,250,744 bp from pter
Size:
185,442 bases
Orientation:
Minus strand

Genomic View for RYK Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RYK Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RYK Gene

Proteins for RYK Gene

  • Protein details for RYK Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P34925-RYK_HUMAN
    Recommended name:
    Tyrosine-protein kinase RYK
    Protein Accession:
    P34925
    Secondary Accessions:
    • Q04696

    Protein attributes for RYK Gene

    Size:
    604 amino acids
    Molecular mass:
    67507 Da
    Quaternary structure:
    • Interacts with DVL1 (via PDZ domain).

    Alternative splice isoforms for RYK Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RYK Gene

Proteomics data for RYK Gene at MOPED

Selected DME Specific Peptides for RYK Gene

Post-translational modifications for RYK Gene

  • Proteolytically cleaved, in part by presenilin, in response to WNT3 stimulation. Cleavage occurs during neuronal differentiation.
  • Glycosylation at Asn136, Asn171, Asn175, Asn179, and Asn206
  • Modification sites at PhosphoSitePlus

Other Protein References for RYK Gene

Domains for RYK Gene

Suggested Antigen Peptide Sequences for RYK Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P34925

UniProtKB/Swiss-Prot:

RYK_HUMAN :
  • P34925
Domain:
  • The extracellular WIF domain is responsible for Wnt binding.
  • Contains 1 protein kinase domain.
  • Contains 1 WIF domain.
Family:
  • Belongs to the protein kinase superfamily. Tyr protein kinase family.
genes like me logo Genes that share domains with RYK: view

Function for RYK Gene

Molecular function for RYK Gene

GENATLAS Biochemistry: related to receptor tyrosine kinase
UniProtKB/Swiss-Prot CatalyticActivity: ATP + a [protein]-L-tyrosine = ADP + a [protein]-L-tyrosine phosphate.
UniProtKB/Swiss-Prot Function: May be a coreceptor along with FZD8 of Wnt proteins, such as WNT1, WNT3, WNT3A and WNT5A. Involved in neuron differentiation, axon guidance, corpus callosum establishment and neurite outgrowth. In response to WNT3 stimulation, receptor C-terminal cleavage occurs in its transmembrane region and allows the C-terminal intracellular product to translocate from the cytoplasm to the nucleus where it plays a crucial role in neuronal development.

Enzyme Numbers (IUBMB) for RYK Gene

Gene Ontology (GO) - Molecular Function for RYK Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004672 protein kinase activity --
GO:0004713 NOT protein tyrosine kinase activity IDA 10454588
GO:0004714 transmembrane receptor protein tyrosine kinase activity TAS 8386829
GO:0004888 transmembrane signaling receptor activity IDA 10454588
GO:0005109 frizzled binding --
genes like me logo Genes that share ontologies with RYK: view
genes like me logo Genes that share phenotypes with RYK: view

miRNA for RYK Gene

miRTarBase miRNAs that target RYK

No data available for Animal Models , Transcription Factor Targeting and HOMER Transcription for RYK Gene

Localization for RYK Gene

Subcellular locations from UniProtKB/Swiss-Prot for RYK Gene

Membrane; Single-pass type I membrane protein. Nucleus. Cytoplasm. Note=In cells that have undergone neuronal differentiation, the C-terminal cleaved part is translocated from the cytoplasm to the nucleus. {ECO:0000250}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RYK Gene COMPARTMENTS Subcellular localization image for RYK gene
Compartment Confidence
nucleus 4
plasma membrane 4
cytosol 1
endoplasmic reticulum 1
extracellular 1
golgi apparatus 1
lysosome 1
mitochondrion 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for RYK Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus ISS --
GO:0005737 cytoplasm ISS --
GO:0005886 plasma membrane TAS --
GO:0005887 integral component of plasma membrane TAS 8386829
GO:0016020 membrane ISS --
genes like me logo Genes that share ontologies with RYK: view

Pathways for RYK Gene

genes like me logo Genes that share pathways with RYK: view

Pathways by source for RYK Gene

Interacting Proteins for RYK Gene

Selected Interacting proteins: P34925-RYK_HUMAN for RYK Gene via I2D

Gene Ontology (GO) - Biological Process for RYK Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006468 NOT protein phosphorylation IDA 10454588
GO:0007165 signal transduction TAS 8386829
GO:0007409 axonogenesis --
GO:0007411 axon guidance ISS --
GO:0016055 Wnt signaling pathway IEA --
genes like me logo Genes that share ontologies with RYK: view

Compounds for RYK Gene

(2) HMDB Compounds for RYK Gene

Compound Synonyms Cas Number PubMed IDs
Adenosine triphosphate
  • 5'-(tetrahydrogen triphosphate) Adenosine
56-65-5
ADP
  • adenosindiphosphorsaeure
58-64-0

(2) Novoseek inferred chemical compound relationships for RYK Gene

Compound -log(P) Hits PubMed IDs
tyrosine 40.9 10
atp 24 2
genes like me logo Genes that share compounds with RYK: view

Transcripts for RYK Gene

Unigene Clusters for RYK Gene

Receptor-like tyrosine kinase:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RYK Gene

No ASD Table

Relevant External Links for RYK Gene

GeneLoc Exon Structure for
RYK
ECgene alternative splicing isoforms for
RYK

Expression for RYK Gene

mRNA expression in normal human tissues for RYK Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for RYK Gene

SOURCE GeneReport for Unigene cluster for RYK Gene Hs.654562

mRNA Expression by UniProt/SwissProt for RYK Gene

P34925-RYK_HUMAN
Tissue specificity: Observed in all the tissues examined
genes like me logo Genes that share expressions with RYK: view

No data available for mRNA differential expression in normal tissues for RYK Gene

Orthologs for RYK Gene

This gene was present in the common ancestor of animals.

Orthologs for RYK Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RYK 35
  • 96.31 (n)
  • 95.54 (a)
RYK 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RYK 35
  • 95.34 (n)
  • 98.71 (a)
RYK 36
  • 63 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RYK 35
  • 94.44 (n)
  • 98.5 (a)
RYK 36
  • 93 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ryk 35
  • 90.53 (n)
  • 97.12 (a)
Ryk 16
Ryk 36
  • 95 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia RYK 36
  • 85 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 100 (a)
OneToMany
-- 36
  • 89 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Ryk 35
  • 90.71 (n)
  • 96.94 (a)
chicken
(Gallus gallus)
Aves RYK 35
  • 82.48 (n)
  • 92.55 (a)
RYK 36
  • 93 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RYK 36
  • 86 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ryk 35
  • 73.4 (n)
  • 82.05 (a)
Str.16124 35
zebrafish
(Danio rerio)
Actinopterygii ryk 35
  • 74.51 (n)
  • 82.9 (a)
ryk 36
  • 72 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP006405 35
  • 48.86 (n)
  • 41.32 (a)
fruit fly
(Drosophila melanogaster)
Insecta dnt 36
  • 37 (a)
OneToMany
drl 36
  • 33 (a)
OneToMany
Drl-2 35
  • 49.85 (n)
  • 39.08 (a)
Drl-2 36
  • 30 (a)
OneToMany
drl 37
  • 46 (a)
dnt 37
  • 37 (a)
Drl-2 37
  • 42 (a)
worm
(Caenorhabditis elegans)
Secernentea lin-18 35
  • 45.2 (n)
  • 33.9 (a)
lin-18 36
  • 27 (a)
OneToOne
lin-18 37
  • 29 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 57 (a)
OneToOne
Species with no ortholog for RYK:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RYK Gene

ENSEMBL:
Gene Tree for RYK (if available)
TreeFam:
Gene Tree for RYK (if available)

Paralogs for RYK Gene

Paralogs for RYK Gene

Pseudogenes.org Pseudogenes for RYK Gene

genes like me logo Genes that share paralogs with RYK: view

Variants for RYK Gene

Sequence variations from dbSNP and Humsavar for RYK Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs14532 -- 134,157,303(+) ATAAA(A/G)GGGAA utr-variant-3-prime
rs14533 -- 134,157,192(-) AGGCT(A/G)GCTTA utr-variant-3-prime
rs1131262 -- 134,222,476(-) CTTTA(A/G)TCTGT missense, reference
rs1131274 -- 134,157,571(-) TTTTT(A/T)AAAAA utr-variant-3-prime
rs3209809 -- 134,157,578(-) aaaaa(A/T)ttttt utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for RYK Gene

Variant ID Type Subtype PubMed ID
esv23490 CNV Loss 19812545

Relevant External Links for RYK Gene

HapMap Linkage Disequilibrium report
RYK
Human Gene Mutation Database (HGMD)
RYK

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RYK Gene

Disorders for RYK Gene

Relevant External Links for RYK

Genetic Association Database (GAD)
RYK
Human Genome Epidemiology (HuGE) Navigator
RYK
genes like me logo Genes that share disorders with RYK: view

No data available for UniProtKB/Swiss-Prot for RYK Gene

Publications for RYK Gene

  1. Molecular cloning and chromosomal localisation of the human homologue of a receptor related to tyrosine kinases (RYK). (PMID: 8386829) Stacker S.A. … Wilks A.F. (Oncogene 1993) 2 3 4 23
  2. A mutation in RYK is a genetic factor for nonsyndromic cleft lip and palate. (PMID: 16681403) Watanabe A. … Yoshiura K. (Cleft Palate Craniofac. J. 2006) 3 23 48
  3. The human ryk cDNA sequence predicts a protein containing two putative transmembrane segments and a tyrosine kinase catalytic domain. (PMID: 8390040) Tamagnone L. … Alitalo K. (Oncogene 1993) 3 4
  4. H-RYK, an unusual receptor kinase: isolation and analysis of expression in ovarian cancer. (PMID: 8726462) Wang X.C. … Ganesan T.S. (Mol. Med. 1996) 3 4
  5. Functional analysis of H-Ryk, an atypical member of the receptor tyrosine kinase family. (PMID: 10454588) Katso R.M. … Ganesan T.S. (Mol. Cell. Biol. 1999) 3 4

Products for RYK Gene

Sources for RYK Gene

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