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Aliases & Descriptions for RXRB
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| DAUDI6 2 | | H-2RIIBP 1, 2 | | MGC1831 2 | | NR2B2 1, 2, 3 | | RCoR-1 1, 2 |
| | | Descriptions |
|---|
| MHC class I promoter binding protein 2 | | Nuclear receptor subfamily 2 group B member 2 3 | | Retinoid X receptor beta 3 | | retinoid X receptor, beta 2 |
|
| | Search outside databases for aliases for RXRB genePrevious GC identifers: GC06M033164 GC06M033208 |
Summaries for RXRB(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for RXRB: This gene encodes a member of the retinoid X receptor (RXR) family of nuclear receptors which are involved in mediating the effects of retinoic acid (RA). This receptor forms homodimers with the retinoic acid, thyroid hormone, and vitamin D receptors, increasing both DNA binding and transcriptional function on their respective response elements. The gene lies within the major histocompatibility complex (MHC) class II region on chromosome 6. An alternatively spliced transcript variant has been described, but its full length sequence has not been determined. [provided by RefSeq] UniProtKB/Swiss-Prot: RXRB_HUMAN, P28702Function: Nuclear hormone receptor. Involved in the retinoic acid response pathway. Binds 9-cis retinoic acid (9C-RA)Gene Wiki entry for RXRB (Retinoid_X_receptor_beta) |
Genomic Location for RXRB
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the RXRB gene 
Entrez Gene cytogenetic band: 6p21.3 Ensembl cytogenetic band: 6p21.32 HGNC cytogenetic band: 6p21.3RXRB Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 6 GeneLoc Exon Structure GeneLoc location for GC06M033270:
(about GC identifiers)
Start:
|
33,269,343 bp from pter |
End:
|
33,276,410 bp from pter |
Size:
|
7,068 bases |
Orientation:
|
minus strand |
2 alternative locations:
| Chr6-,c6_QBL 33,233,043-33,240,144 | Chr6-,c6_COX 33,230,071-33,237,136 |
RefSeq DNA sequence:- NC_000006.10 NT_007592.14 NT_113891.1 NT_113897.1
| Proteins for RXRB
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: RXRB_HUMAN, P28702 (See
protein sequence)Recommended Name: Retinoic acid receptor RXR-beta Size: 533 amino acids; 56922 Da
Subcellular location: Nucleus
PDB structure from and Proteopedia :1H9U (3D)
 1UHL (3D)
 
Secondary accessions: P28703REFSEQ proteins: NP_068811.1
ENSEMBL proteins: ENSP00000378607 ENSP00000363813 ENSP00000363815 ENSP00000363812 ENSP00000363817
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
1 Gene Ontology (GO) cellular component term (links to tree view): About this table
Antibodies for RXRB: Assays for RXRB: | Protein
Domains/ Families for RXRB(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P28702
ProtoNet protein and cluster: P28702 2 Blocks protein families: IPB000003 Retinoic acid receptor signature IPB001723 Steroid hormone receptor signature
UniProtKB/Swiss-Prot: RXRB_HUMAN, P28702Domain: Composed of three domains: a modulating N-terminal domain, a DNA-binding domain and a C-terminal steroid-binding domainSimilarity: Belongs to the nuclear hormone receptor family. NR2 subfamilySimilarity: Contains 1 nuclear receptor DNA-binding domain | Gene Function for RXRB
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| Inhib. RNA: |  | Invitrogen RNAi Products for gene knock-down (RXRB) | |  | Millipore RNAi Products for the Analysis of RXRB Gene knock-down | |  | Abnova Chimera RNAi Products for Gene knock-down (RXRB) |               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_021976
Applied Biosystems Silencer® siRNAs for RXRB
Sigma-Aldrich siRNA and siRNA Panels for RXRB  Sigma-Aldrich shRNA Panels and shRNA for RXRB  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_021976                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_021976                                  untagged cDNA clone in CMV expression vector: NM_021976 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_021976
UniProtKB/Swiss-Prot: RXRB_HUMAN, P28702Function: Nuclear hormone receptor. Involved in the retinoic acid response pathway. Binds 9-cis retinoic acid (9C-RA)Genatlas biochemistry entry for RXRB:retinoic acid X receptor binding and activated by 9-cis-retinoic acid,only (9-cis-RA),beta subunit,obligate member of heterodimeric nuclear receptors,steroid/thyroid/retinoic receptor superfamily15/19 MGI mutant phenotypes (inferred from 4 alleles ) (MGI details for Rxrb) (see all 19
):
5/9 Gene Ontology (GO) molecular function terms (links to tree view) (see all 9
): About this table | Pathways & Interactions for RXRB
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/9 Sigma-Aldrich "Your Favorite Gene" Pathways for RXRB (Your Favorite Gene powered by Ingenuity) (see all 9
) 
Gene Network CentralTM Interacting Genes and Proteins Network for RXRB 
5/26 Interacting proteins for RXRB (P287022 ENSP000003638173) via UniProtKB, MINT, and/or STRING (see all 26
)About this table
2 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006350 | transcription |
IEA | -- | | GO:0006355 | regulation of transcription, DNA-dependent |
IEA | -- | About this table
|
Drugs & Compounds for RXRB(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  |
Enzo Life Sciences drugs & compounds for RXRB |
Compounds for RXRB available from Tocris Bioscience
| Compound | Action |
CAS
number |
|---|
| Liarozole hydrochloride | Blocks retinoic acid metabolism | [145858-50-0] | | Fenretinide | Synthetic retinoid. Potent anti-cancer agent | [65646-68-6] | | Retinoic acid | Endogenous retinoic acid receptor agonist. Also modulates PPARdelta | [302-79-4] | About this table
1 Novoseek chemical compound relationship for RXRB gene
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| oligonucleotide |
2.63 |
1 |
15585599 (1) |
About this table
|
Transcripts for RXRB(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
| Inhib. RNA: |  | Invitrogen RNAi Products for gene knock-down (RXRB) | |  | Millipore RNAi Products for the Analysis of RXRB Gene knock-down | |  | Abnova Chimera RNAi Products for Gene knock-down (RXRB) |               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_021976
Sigma-Aldrich siRNA and siRNA Panels for RXRB  Sigma-Aldrich shRNA Panels and shRNA for RXRB  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_021976 REFSEQ mRNAs for RXRB gene: NM_021976.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_021976               OriGene GFP tagged cDNA clone in CMV expression vector: NM_021976                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_021976                                  untagged cDNA clone in CMV expression vector: NM_021976  Additional cDNA sequence: AB209244.1 AK225842.1 AK295759.1 AK300402.1 AK301096.1 AK302125.1 BC001167.1 BT007280.1 CR618812.1 M84820.1 U00961.1 X63522.1 X65463.1 X66424.1 15 DOTS entries: DT.118619 DT.100811035 DT.91841173 DT.118621 DT.100798333 DT.100029702 DT.100811028 DT.448809 DT.95145990 DT.100798335 DT.75187712 DT.100767296 DT.100798340 DT.121346999 DT.100830297 24/297 AceView cDNA sequences (see all 297
):AA336809 BM549884 BI906740 AI888632 CR618812 AW008891 BE328430 BX103701 BM014020 F13008 NM_021976 BQ063317 AU105238 AW026020 CK903550 BF875011 BU726451 BG680532 AI669725 BI962866 AI003461 AU099317 BI962952 AA195311
highest scoring ESTs for RXRB:M84820 AA010151 AL044221 AU099317 BC001167 BE242137 BE260279 BE882266 BF311397 BG912551 Unigene Cluster for RXRB: Retinoid X receptor, beta Hs.388034 [show with all ESTs]Unigene Representative Sequence: NM_021976
GeneLoc Exon Structure
5 Ensembl transcripts including schematic representations: ENST00000395178
ENST00000374681
ENST00000374683
ENST00000374680
ENST00000374685
|
Expression for RXRB
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| RXRB expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for RXRB
1 / 2 / 3 8 probe-sets matching RXRB gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: ATTTTTGCCC
SOURCE GeneReport for Unigene cluster: Hs.388034
Expression variation in blood from EXPOLDB for RXRB UniProtKB/Swiss-Prot: RXRB_HUMAN, P28702Tissue specificity: Expressed in a variety of tumor cell lines |
Orthologs for RXRB
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for RXRB gene from 5/9 species (see all 9
)
About this table Species with no ortholog for RXRB
ENSEMBL Gene Tree for RXRB | Paralogs for RXRB(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for RXRB gene
- RXRG2 RXRA2
|
SNPs/Variants for RXRB(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for RXRB (up to first 250kb)
|
Disorders & Mutations for RXRB
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 180246
3 Novoseek disease relationships for RXRB gene
About this table
Genetic Association Database: RXRB Human Genome Epidemiology Navigator: RXRB (11 documents)
|
Medical News for RXRB(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for RXRB (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/93 PubMed articles for RXRB gene (see all 93
):- Mutation analysis of the retinoid X receptor beta, nuclear-related receptor 1, and peroxisome proliferator-activated receptor alpha genes in schizophrenia and alcohol dependence: possible haplotype association of nuclear-related receptor 1 gene to alcohol dependence. (PubMed id 11840500)1, 3, 6 Ishiguro H....Arinami T. (2002)
- Cloning and chromosome mapping of human retinoid X receptor beta: selective amino acid sequence conservation of a nuclear hormone receptor in mammals. (PubMed id 8381386)1, 3, 4 Fleischhauer K.... Yang S.Y. (1993)
- Isolation of a full-length cDNA clone encoding a N-terminally variant form of the human retinoid X receptor beta. (PubMed id 1315958)1, 3, 4 Fleischhauer K....Yang S.Y. (1992)
- Mapping of RXRB to human chromosome 6p21.3. (PubMed id 8257090)1, 2, 3 Fitzgibbon J....Povey S. (1993)
- Purification, cloning, and RXR identity of the HeLa cell factor with which RAR or TR heterodimerizes to bind target sequences efficiently. (PubMed id 1310259)1, 3, 4 Leid M....Chambon P. (1992)
- Structural variants in the retinoid receptor genes in patients with schizophrenia and other psychiatric diseases. (PubMed id 15635645)3, 6 Feng J....Sommer S.S. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404)3, 4 Mungall A.J.... Beck S. (2003)
- The structural basis for the specificity of retinoid-X receptor-selective agonists: new insights into the role of helix H12. (PubMed id 11782480)3, 4 Love J.D....Schwabe J.W. (2002)
- Linkage disequilibrium between HLA-DPB1 alleles and retinoid X receptor beta haplotypes. (PubMed id 12175732)1, 3 Rajsbaum R....Awdeh Z.L. (2002)
|
Search for RXRB
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing RXRB
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing RXRB
(According to HUGE)
About This Section
| -- |
Specialized Databases showing RXRB(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for RXRB(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for RXRB:

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| | | | Tocris compounds for RXRB |
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GeneCards Homepage - Last full update: 1 Jul 2009
Incremental update: 13 Oct 2009
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