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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

RWDD4 Gene

protein-coding   GIFtS: 46
GCID: GC04M184561

RWD Domain Containing 4

(Previous names: family with sequence similarity 28, member A, RWD domain...)
(Previous symbols: FAM28A, RWDD4A)
  Search for RWDD4
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
RWD Domain Containing 41 2     RWD Domain Containing 4A1 2
FAM28A1 2 3     RWD Domain-Containing Protein 42
RWDD4A1 2 3     RWD Domain-Containing Protein 4A2
Family With Sequence Similarity 28, Member A1 2     Protein FAM28A3

External Ids:    HGNC: 237501   Entrez Gene: 2019652   Ensembl: ENSG000001825527   UniProtKB: Q6NW293   

Export aliases for RWDD4 gene to outside databases


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for RWDD4 Gene: 
RWDD4 (RWD domain containing 4) is a protein-coding gene.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000004.11  NC_018915.2  NT_016354.19  
Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for RWDD4
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidRWDD4 promoter sequence
   Search SABiosciences Chromatin IP Primers for RWDD4

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RWDD4


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4q35.1   Ensembl cytogenetic band:  4q35.1   HGNC cytogenetic band: 4q35.1

RWDD4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RWDD4 gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04M184561:  view genomic region     (about GC identifiers)

Start:
184,560,788 bp from pter      End:
184,580,378 bp from pter
Size:
19,591 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: RWDD4_HUMAN, Q6NW29 (See protein sequence)
Recommended Name: RWD domain-containing protein 4  
Size: 188 amino acids; 21251 Da
Sequence caution: Sequence=AAQ96848.1; Type=Erroneous gene model prediction;
Secondary accessions: B2RDE9 Q75LA9 Q8WVW2

Explore the universe of human proteins at neXtProt for RWDD4: NX_Q6NW29

Explore proteomics data for RWDD4 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q6NW29

  • RWDD4 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    RWDD4 Protein Expression
    REFSEQ proteins: NP_689895.2  
    ENSEMBL proteins: 
     ENSP00000388920   ENSP00000426329   ENSP00000427164   ENSP00000423598   ENSP00000420945  
     ENSP00000422970   ENSP00000332177  

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    Cloud-Clone Corp. CLIAs for RWDD4


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    2 InterPro protein domains:
     IPR016135 UBQ-conjugating_enzyme/RWD
     IPR006575 RWD-domain

    Graphical View of Domain Structure for InterPro Entry Q6NW29

    ProtoNet protein and cluster: Q6NW29

    2 Blocks protein domains:
    IPB000608 Ubiquitin-conjugating enzymes
    IPB006575 RWD


    UniProtKB/Swiss-Prot: RWDD4_HUMAN, Q6NW29
    Similarity: Contains 1 RWD domain


    RWDD4 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

         Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding ----
         
    RWDD4 for ontologies           About GeneDecksing


    Animal Models:
       inGenious Targeting Laboratory - Custom generated mouse model solutions for RWDD4 
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    miRNA
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    SwitchGear 3'UTR luciferase reporter plasmidRWDD4 3' UTR sequence
    Inhib. RNA
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RWDD4


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RWDD4

    STRING Interaction Network Preview (showing 2 interactants - click image to see more details)

    2 Interacting proteins for RWDD4 (Q6NW292, 3 ENSP000003889204) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    KCTD17Q8N5Z52, 3, ENSP000003843914MINT-66413 I2D: score=4 STRING: ENSP00000384391
    ELAVL1ENSP000003852694STRING: ENSP00000385269
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for RWDD4

    Search CenterWatch for drugs/clinical trials and news about RWDD4

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for RWDD4 gene: 
    NM_152682.2  

    Unigene Cluster for RWDD4:

    RWD domain containing 4
    Hs.133337  [show with all ESTs]
    Unigene Representative Sequence: NM_152682
    7 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000326397(uc021xvb.1) ENST00000510968 ENST00000510702 ENST00000512740
    ENST00000514322(uc011ckl.1) ENST00000506467 ENST00000327570(uc003ivt.1)

    miRNA
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    8/43 QIAGEN miScript miRNA Assays for microRNAs that regulate RWDD4 (see all 43):
    hsa-miR-142-5p hsa-miR-3130-5p hsa-miR-607 hsa-miR-200a hsa-miR-30d hsa-miR-3921 hsa-miR-548l hsa-miR-141
    SwitchGear 3'UTR luciferase reporter plasmidRWDD4 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene RNAi products in human, mouse, rat for RWDD4
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RWDD4
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    GenScript: all cDNA clones in your preferred vector: RWDD4 (NM_152682)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for RWDD4
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RWDD4
    Sirion Biotech Customized lentivirus for stable overexpression of RWDD4 
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    Primer
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RWDD4
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    Additional mRNA sequence: 

    AK021702.1 AK293274.1 AK315515.1 BC017472.1 BC067752.1 BC107432.1 

    13 DOTS entries:

    DT.453562  DT.100777253  DT.101965830  DT.306793  DT.92434153  DT.121094033  DT.121256900  DT.121256905 
    DT.121256887  DT.40132190  DT.97820216  DT.434001  DT.92434152 

    24/148 AceView cDNA sequences (see all 148):

    BM765728 CB068389 BM745990 CD724089 AI478798 AI424225 AA456561 CD723379 
    AI521757 CB177295 BQ009186 AI658537 AW965087 AA806032 CD724234 BU619414 
    AA721024 AA343918 AA235962 AI244242 AI583529 BU634301 AI066556 BE501914 

    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for RWDD4    About this scheme

    ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7
    SP1:                    -           -     -                           
    SP2:                    -                                             
    SP3:                    -                                             
    SP4:                                                                  
    SP5:                                                                  


    ECgene alternative splicing isoforms for RWDD4

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    RWDD4 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: CCAATGAACT
    RWDD4 Expression
    About this image


    See RWDD4 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for RWDD4

    SOURCE GeneReport for Unigene cluster: Hs.133337
        SABiosciences Custom PCR Arrays for RWDD4
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RWDD4

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for RWDD4 gene from 6/15 species (see all 15)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Rwdd4a1 , 5 RWD domain containing 4A1, 5 85.64(n)1
    90.96(a)1
      8 (26.86 cM)5
    1921741  NM_203507.31  NP_987103.11 
     475336645 
    chicken
    (Gallus gallus)
    Aves RWDD41 RWD domain containing 4 78.85(n)
    84.95(a)
      428749  XM_001231978.2  XP_001231979.1 
    lizard
    (Anolis carolinensis)
    Reptilia RWDD46
    RWD domain containing 4
    76(a)
    1 ↔ 1
    5(113719426-113727536)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.19732 Xenopus laevis transcribed sequences 76.81(n)    CD361103.1 
    zebrafish
    (Danio rerio)
    Actinopterygii rwdd1 RWD domain containing 4 66.11(n)
    65.36(a)
      449812  NM_001005985.1  NP_001005985.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG103431 CG10343 54.4(n)
    50(a)
      35127  NM_136056.2  NP_609900.1 


    ENSEMBL Gene Tree for RWDD4 (if available)
    TreeFam Gene Tree for RWDD4 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for RWDD4 gene

    RWDD4 for paralogs           About GeneDecksing


    2 Pseudogenes.org Pseudogenes for RWDD4
    PGOHUM00000232667 PGOHUM00000233515


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/426 SNPs in RWDD4 are shown (see all 426)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 4 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs48622291,2
    C,F,H--184560301(+) ACATAG/AGGGGA 1 -- ds500120Minor allele frequency- A:0.35NS EA NA WA CSA 2342
    rs1912889381,2
    --184560334(+) TGTGAA/GGTAAC 1 -- ds50010--------
    rs2005098461,2
    C--184560342(+) AACTT-/GGGGGCAC 1 -- ds50010--------
    rs1850016121,2
    --184560383(+) ACTTAC/TATATG 1 -- ds50010--------
    rs1119944801,2
    C--184560433(+) AGAACCA/-CAGTT 1 -- ds50011Minor allele frequency- -:0.50CSA 2
    rs761786861,2
    C--184560434(+) GAACC-/CAAGTTC 1 -- ds50010--------
    rs781023451,2
    F--184560565(+) TTGAAG/ACTGAA 1 -- ds50011Minor allele frequency- A:0.01EA 120
    rs1892867611,2
    --184560710(+) TACATC/GTTGCA 1 -- ds50010--------
    rs344236401,2
    C,F--184560761(+) TGAAGT/CGATCT 1 -- ds50012Minor allele frequency- C:0.05NA 122
    rs675057531,2
    C,F--184560790(+) AAATCG/ACTGTG 1 -- ut316Minor allele frequency- A:0.34NA WA CSA EA 364

    HapMap Linkage Disequilibrium report for RWDD4 (184560788 - 184580378 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 5 variations for RWDD4:    About this table     
    Variant IDTypeSubtypePubMed ID
    esv2728875CNV Deletion23290073
    esv2728874CNV Deletion23290073
    nsv830165CNV Loss17160897
    dgv5850n71CNV Gain21882294
    nsv881675CNV Gain21882294

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for RWDD4 gene, integrated from 9 sources (see all 14):
    (articles sorted by number of sources associating them with RWDD4)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)1, 2 Hillier L.W....Wilson R.K. (2005)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    4. A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (2012)
    5. Charting the landscape of tandem BRCT domain-mediated protein interactions. (PubMed id 22990118)1 Woods N.T....Monteiro A.N. (2012)
    6. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)
    7. Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (2011)
    8. Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. (PubMed id 20068231)2 Olsen J.V....Mann M. (2010)
    9. Dynamics of cullin-RING ubiquitin ligase network revea led by systematic quantitative proteomics. (PubMed id 21145461)1 Bennett E.J....Harper J.W. (2010)
    10. Ubiquitin-mediated proteolysis of HuR by heat shock. (PubMed id 19322201)1 Abdelmohsen K....Gorospe M. (2009)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 201965 HGNC: 23750 AceView: MGC10198 Ensembl:ENSG00000182552 euGenes: HUgn201965
    ECgene: RWDD4 H-InvDB: RWDD4

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for RWDD4 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for RWDD4 gene:
    Search GeneIP for patents involving RWDD4

    GeneCards and IP:
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    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 3 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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