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RWDD4 Gene

protein-coding   GIFtS: 45
GCID: GC04M184561

RWD Domain Containing 4

(Previous names: family with sequence similarity 28, member A, RWD domain...)
(Previous symbols: FAM28A, RWDD4A)
  See related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
RWD Domain Containing 41 2     RWD Domain Containing 4A1 2
FAM28A1 2 3     RWD Domain-Containing Protein 42
RWDD4A1 2 3     RWD Domain-Containing Protein 4A2
Family With Sequence Similarity 28, Member A1 2     Protein FAM28A3

External Ids:    HGNC: 237501   Entrez Gene: 2019652   Ensembl: ENSG000001825527   UniProtKB: Q6NW293   

Export aliases for RWDD4 gene to outside databases


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for RWDD4 Gene:
RWDD4 (RWD domain containing 4) is a protein-coding gene. Diseases associated with RWDD4 include malaria.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000004.12  NT_016354.20  NC_018915.2  
Regulatory elements:
   Search for regulatory transcription factor binding sites for RWDD4
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidRWDD4 promoter sequence
   Search Chromatin IP Primers for RWDD4

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat RWDD4


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4q35.1   Ensembl cytogenetic band:  4q35.1   HGNC cytogenetic band: 4q35.1

RWDD4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RWDD4 gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04M184561:  view genomic region     (about GC identifiers)

Start:
184,560,788 bp from pter      End:
184,580,378 bp from pter
Size:
19,591 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: RWDD4_HUMAN, Q6NW29 (See protein sequence)
Recommended Name: RWD domain-containing protein 4  
Size: 188 amino acids; 21251 Da
Sequence caution: Sequence=AAQ96848.1; Type=Erroneous gene model prediction;
Secondary accessions: B2RDE9 Q75LA9 Q8WVW2

Explore the universe of human proteins at neXtProt for RWDD4: NX_Q6NW29

Explore proteomics data for RWDD4 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See RWDD4 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_689895.2  
    ENSEMBL proteins: 
     ENSP00000388920   ENSP00000426329   ENSP00000427164   ENSP00000423598   ENSP00000420945  
     ENSP00000422970   ENSP00000332177  

    RWDD4 Human Recombinant Protein Products:

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    Cloud-Clone Corp. Proteins for RWDD4

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    ThermoFisher Antibodies for RWDD4
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    Cloud-Clone Corp. ELISAs for RWDD4
    Cloud-Clone Corp. CLIAs for RWDD4


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    2 InterPro protein domains:
     IPR016135 UBQ-conjugating_enzyme/RWD
     IPR006575 RWD-domain

    Graphical View of Domain Structure for InterPro Entry Q6NW29

    ProtoNet protein and cluster: Q6NW29

    2 Blocks protein domains:
    IPB000608 Ubiquitin-conjugating enzymes
    IPB006575 RWD


    UniProtKB/Swiss-Prot: RWDD4_HUMAN, Q6NW29
    Similarity: Contains 1 RWD domain


    RWDD4 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 1 molecular function term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding ----
         
    RWDD4 for ontologies           About GeneDecksing


    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for RWDD4
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    miRNA
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    Selected qRT-PCR Assays for microRNAs that regulate RWDD4 (see all 43):
    hsa-miR-142-5p hsa-miR-3130-5p hsa-miR-607 hsa-miR-200a hsa-miR-30d hsa-miR-3921 hsa-miR-548l hsa-miR-141
    SwitchGear 3'UTR luciferase reporter plasmidRWDD4 3' UTR sequence
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat RWDD4

    Gene Editing
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    Clone
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    GenScript: all cDNA clones in your preferred vector: RWDD4 (NM_152682)
    Browse Sino Biological Human cDNA Clones
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    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RWDD4

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    In Situ Assay
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RWDD4


    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for RWDD4
    Interactions:

        Search GeneGlobe Interaction Network for RWDD4

    STRING Interaction Network Preview (showing 5 interactants - click image to see 9)

    Selected Interacting proteins for RWDD4 (Q6NW292, 3 ENSP000003889204) via UniProtKB, MINT, STRING, and/or I2D (see all 9)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    KCTD17Q8N5Z52, 3, ENSP000003843914MINT-66413 I2D: score=4 STRING: ENSP00000384391
    GCN1L1ENSP000003006484STRING: ENSP00000300648
    ESF1ENSP000002028164STRING: ENSP00000202816
    ELAVL1ENSP000003852694STRING: ENSP00000385269
    IMPACTENSP000002842024STRING: ENSP00000284202
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for RWDD4



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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    REFSEQ mRNAs for RWDD4 gene: 
    NM_152682.2  

    Unigene Cluster for RWDD4:

    RWD domain containing 4
    Hs.133337  [show with all ESTs]
    Unigene Representative Sequence: NM_152682
    7 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000326397(uc021xvb.1) ENST00000510968 ENST00000510702 ENST00000512740
    ENST00000514322(uc011ckl.1) ENST00000506467 ENST00000327570(uc003ivt.1)

    miRNA
    Products:
         
    Block miRNA regulation of human, mouse, rat RWDD4 using miScript Target Protectors
    Selected qRT-PCR Assays for microRNAs that regulate RWDD4 (see all 43):
    hsa-miR-142-5p hsa-miR-3130-5p hsa-miR-607 hsa-miR-200a hsa-miR-30d hsa-miR-3921 hsa-miR-548l hsa-miR-141
    SwitchGear 3'UTR luciferase reporter plasmidRWDD4 3' UTR sequence
    Inhib. RNA
    Products:
         
    OriGene RNAi products in human, mouse, rat for RWDD4
    Predesigned siRNA for gene silencing in human, mouse, rat RWDD4
    Clone
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    OriGene clones in human, mouse for RWDD4 (see all 8)
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    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
    GenScript: all cDNA clones in your preferred vector: RWDD4 (NM_152682)
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    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RWDD4
    Primer
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    OriGene qPCR primer pairs and template standards for RWDD4
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    Pre-validated RT2 qPCR Primer Assay in human, mouse, rat RWDD4
      QuantiTect SYBR Green Assays in human, mouse, rat RWDD4
      QuantiFast Probe-based Assays in human, mouse, rat RWDD4

    Additional mRNA sequence: 

    AK021702.1 AK293274.1 AK315515.1 BC017472.1 BC067752.1 BC107432.1 

    13 DOTS entries:

    DT.453562  DT.100777253  DT.101965830  DT.306793  DT.92434153  DT.121094033  DT.121256900  DT.121256905 
    DT.121256887  DT.40132190  DT.97820216  DT.434001  DT.92434152 

    Selected AceView cDNA sequences (see all 148):

    CB177295 CD724089 AI066556 BQ009186 BM745990 AI963182 AI658537 AA806032 
    CD723379 BE501914 CA430263 AI521757 BU619414 BU634301 CB068389 CD724234 
    AA456561 AA235962 AI583529 AI424225 BM765728 AI478798 AA832031 AI539101 

    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for RWDD4    About this scheme

    ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7
    SP1:                    -           -     -                           
    SP2:                    -                                             
    SP3:                    -                                             
    SP4:                                                                  
    SP5:                                                                  


    ECgene alternative splicing isoforms for RWDD4

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    RWDD4 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: CCAATGAACT
    RWDD4 Expression
    About this image

    RWDD4 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    RWDD4 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.133337
        Custom PCR Arrays for RWDD4
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RWDD4

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals.

    Orthologs for RWDD4 gene from Selected species (see all 15)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Rwdd4a1 , 5 RWD domain containing 4A1, 5 85.64(n)1
    90.96(a)1
      8 (26.86 cM)5
    1921741  NM_203507.31  NP_987103.11 
     475336645 
    chicken
    (Gallus gallus)
    Aves RWDD41 RWD domain containing 4 79.03(n)
    84.83(a)
      428749  XM_001231978.3  XP_001231979.2 
    lizard
    (Anolis carolinensis)
    Reptilia RWDD46
    RWD domain containing 4
    76(a)
    1 ↔ 1
    5(113719426-113727536)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.19732 Xenopus laevis transcribed sequences 76.81(n)    CD361103.1 
    zebrafish
    (Danio rerio)
    Actinopterygii rwdd1 RWD domain containing 4 66.86(n)
    66.48(a)
      449812  NM_001005985.1  NP_001005985.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG103431 CG10343 54.58(n)
    50(a)
      35127  NM_136056.2  NP_609900.1 


    ENSEMBL Gene Tree for RWDD4 (if available)
    TreeFam Gene Tree for RWDD4 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for RWDD4 gene

    RWDD4 for paralogs           About GeneDecksing


    2 Pseudogenes.org Pseudogenes for RWDD4
    PGOHUM00000232667 PGOHUM00000233515


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for RWDD4 (see all 426)    About this table    
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 4 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs48622291,2
    C,F,H--184560301(+) ACATAG/AGGGGA 1 -- ds500120Minor allele frequency- A:0.35NS EA NA WA CSA 2342
    rs1912889381,2
    --184560334(+) TGTGAA/GGTAAC 1 -- ds50010--------
    rs2005098461,2
    C--184560342(+) AACTT-/GGGGGCAC 1 -- ds50010--------
    rs1850016121,2
    --184560383(+) ACTTAC/TATATG 1 -- ds50010--------
    rs1119944801,2
    C--184560433(+) AGAACCA/-CAGTT 1 -- ds50011Minor allele frequency- -:0.50CSA 2
    rs761786861,2
    C--184560434(+) GAACC-/CAAGTTC 1 -- ds50010--------
    rs781023451,2
    F--184560565(+) TTGAAG/ACTGAA 1 -- ds50011Minor allele frequency- A:0.01EA 120
    rs1892867611,2
    --184560710(+) TACATC/GTTGCA 1 -- ds50010--------
    rs344236401,2
    C,F--184560761(+) TGAAGT/CGATCT 1 -- ds50012Minor allele frequency- C:0.05NA 122
    rs675057531,2
    C,F--184560790(+) AAATCG/ACTGTG 1 -- ut316Minor allele frequency- A:0.34NA WA CSA EA 364

    HapMap Linkage Disequilibrium report for RWDD4 (184560788 - 184580378 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 5 variations for RWDD4:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv2728875CNV Deletion23290073
    esv2728874CNV Deletion23290073
    nsv830165CNV Loss17160897
    dgv5850n71CNV Gain21882294
    nsv881675CNV Gain21882294

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing RWDD4
    DNA2.0 Custom Variant and Variant Library Synthesis for RWDD4

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    1 disease for RWDD4:    
    About MalaCards
    malaria


    RWDD4 for disorders           About GeneDecksing


    Export disorders for RWDD4 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for RWDD4 gene, integrated from 10 sources (see all 15):
    (articles sorted by number of sources associating them with RWDD4)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)1, 2 Hillier L.W.... Wilson R.K. (Nature 2005)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    4. A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (Cell 2012)
    5. Charting the landscape of tandem BRCT domain-mediated protein interactions. (PubMed id 22990118)1 Woods N.T....Monteiro A.N. (Sci Signal 2012)
    6. N-terminal acetylome analyses and functional insights of the N- terminal acetyltransferase NatB. (PubMed id 22814378)2 Van Damme P....Aldabe R. (Proc. Natl. Acad. Sci. U.S.A. 2012)
    7. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (BMC Syst. Biol. 2011)
    8. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (amp 2011)
    9. Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. (PubMed id 20068231)2 Olsen J.V....Mann M. (Sci. Signal. 2010)
    10. Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics. (PubMed id 21145461)1 Bennett E.J....Harper J.W. (Cell 2010)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 201965 HGNC: 23750 AceView: MGC10198 Ensembl:ENSG00000182552 euGenes: HUgn201965
    ECgene: RWDD4 H-InvDB: RWDD4

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for RWDD4 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for RWDD4 gene:
    Search GeneIP for patents involving RWDD4

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