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Aliases for RUVBL1-AS1 Gene

Subcategory (RNA class) for RUVBL1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RUVBL1-AS1 Gene

  • RUVBL1 Antisense RNA 1 2 3 5
  • RUVBL1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for RUVBL1-AS1 Gene

Previous GeneCards Identifiers for RUVBL1-AS1 Gene

  • GC00U933280
  • GC03P127795

Summaries for RUVBL1-AS1 Gene

GeneCards Summary for RUVBL1-AS1 Gene

RUVBL1-AS1 (RUVBL1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RUVBL1-AS1 Gene

Genomics for RUVBL1-AS1 Gene

Regulatory Elements for RUVBL1-AS1 Gene

Enhancers for RUVBL1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G128111 1.4 FANTOM5 Ensembl ENCODE 11.8 +37.5 37504 3.6 HDGF NFIB INSM2 SIN3A FEZF1 RAD21 YY1 GATA2 ZNF366 FOS RUVBL1 RUVBL1-AS1 RNU2-37P RNU6-823P EEFSEC SEC61A1 GATA2 PIR39032
GH03G128051 1.3 ENCODE dbSUPER 11.7 -22.3 -22291 4.8 FOXA2 CREB3L1 ZFP64 ARID4B SIN3A DMAP1 YY1 ZNF766 ZNF207 ZNF143 SEC61A1 RUVBL1-AS1 RNU2-37P LOC102723759 GC03M128076
GH03G128122 1.1 ENCODE 11.4 +47.8 47765 2.8 PKNOX1 FOXA2 CREB3L1 ARNT AGO1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 RUVBL1 RUVBL1-AS1 RNU2-37P PIR39032
GH03G128074 1.7 FANTOM5 ENCODE dbSUPER 0.7 +1.0 984 3.7 PKNOX1 ATF1 CREB3L1 AGO1 SIN3A ZNF766 GATA2 ZNF143 ZNF207 KLF13 GATA2 SEC61A1 RUVBL1 DNAJB8 RUVBL1-AS1 PIR39032
GH03G128079 1.5 FANTOM5 ENCODE dbSUPER 0.4 +5.0 5003 3.5 HDGF SIN3A THRB RAD21 RARA YY1 GATA2 ZNF366 FOS USF2 GATA2 SEC61A1 EEFSEC DNAJB8 RUVBL1-AS1 PIR39032
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RUVBL1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for RUVBL1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000158050 -10 401 ATF1 AGO1 ZNF143 ZNF207 KLF13 SP3 YY2 NCOA1 REST SMARCA4
ENSR00000306087 1190 401 PKNOX1 ATF1 RB1 TBL1XR1 CREB3L1 FUS ZNF766 GATA2 CREM SMAD5

Genomic Location for RUVBL1-AS1 Gene

Chromosome:
3
Start:
128,075,810 bp from pter
End:
128,079,056 bp from pter
Size:
3,247 bases
Orientation:
Plus strand

Genomic View for RUVBL1-AS1 Gene

Genes around RUVBL1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RUVBL1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RUVBL1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RUVBL1-AS1 Gene

Proteins for RUVBL1-AS1 Gene

Post-translational modifications for RUVBL1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RUVBL1-AS1 Gene

Domains & Families for RUVBL1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RUVBL1-AS1 Gene

Function for RUVBL1-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RUVBL1-AS1 Gene

Localization for RUVBL1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RUVBL1-AS1 Gene

Pathways & Interactions for RUVBL1-AS1 Gene

SuperPathways for RUVBL1-AS1 Gene

No Data Available

Interacting Proteins for RUVBL1-AS1 Gene

Gene Ontology (GO) - Biological Process for RUVBL1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RUVBL1-AS1 Gene

Drugs & Compounds for RUVBL1-AS1 Gene

No Compound Related Data Available

Transcripts for RUVBL1-AS1 Gene

mRNA/cDNA for RUVBL1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RUVBL1-AS1 Gene

No ASD Table

Relevant External Links for RUVBL1-AS1 Gene

GeneLoc Exon Structure for
RUVBL1-AS1
ECgene alternative splicing isoforms for
RUVBL1-AS1

Expression for RUVBL1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RUVBL1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for RUVBL1-AS1 Gene

This gene is overexpressed in Testis (x5.4).
genes like me logo Genes that share expression patterns with RUVBL1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RUVBL1-AS1 Gene

Orthologs for RUVBL1-AS1 Gene

Evolution for RUVBL1-AS1 Gene

ENSEMBL:
Gene Tree for RUVBL1-AS1 (if available)
TreeFam:
Gene Tree for RUVBL1-AS1 (if available)

No data available for Orthologs for RUVBL1-AS1 Gene

Paralogs for RUVBL1-AS1 Gene

No data available for Paralogs for RUVBL1-AS1 Gene

Variants for RUVBL1-AS1 Gene

Sequence variations from dbSNP and Humsavar for RUVBL1-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000924579 -- 128,075,988(+) GCGCC(C/T)GGCTG intron-variant, nc-transcript-variant
rs1000966487 -- 128,075,664(+) CTAGG(C/T)CTGGC intron-variant, upstream-variant-2KB
rs1001356702 -- 128,075,465(+) AAACT(A/G)AGTGT intron-variant, upstream-variant-2KB
rs1001361919 -- 128,075,266(+) CTTGC(A/G)GTTTT intron-variant, upstream-variant-2KB
rs1001896684 -- 128,075,016(+) GCAGT(G/T)CCTAG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RUVBL1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1001879 CNV gain 25217958
nsv1002685 CNV gain 25217958
nsv3991 CNV insertion 18451855

Relevant External Links for RUVBL1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RUVBL1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RUVBL1-AS1 Gene

Disorders for RUVBL1-AS1 Gene

Relevant External Links for RUVBL1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RUVBL1-AS1

No disorders were found for RUVBL1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RUVBL1-AS1 Gene

Publications for RUVBL1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for RUVBL1-AS1 Gene

Sources for RUVBL1-AS1 Gene

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