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Aliases for RUVBL1-AS1 Gene

Subcategory (RNA class) for RUVBL1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RUVBL1-AS1 Gene

  • RUVBL1 Antisense RNA 1 2 3 5
  • RUVBL1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for RUVBL1-AS1 Gene

Previous GeneCards Identifiers for RUVBL1-AS1 Gene

  • GC00U933280
  • GC03P127795

Summaries for RUVBL1-AS1 Gene

GeneCards Summary for RUVBL1-AS1 Gene

RUVBL1-AS1 (RUVBL1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for RUVBL1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RUVBL1-AS1 Gene

Genomics for RUVBL1-AS1 Gene

GeneHancer (GH) Regulatory Elements for RUVBL1-AS1 Gene

Promoters and enhancers for RUVBL1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I128074 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE dbSUPER 550.8 +1.0 984 3.7 PKNOX1 SMAD1 ATF1 SIN3A IRF4 ZNF766 GATA2 ARID2 ZNF207 ZNF143 GC03M128076 RNU2-37P RUVBL1-AS1 GATA2 SEC61A1 RUVBL1 DNAJB8 PIR39032
GH03I128073 Enhancer 0.6 ENCODE dbSUPER 550.8 -1.7 -1694 1.2 CTCF JUN GC03M128076 RNU2-37P RUVBL1-AS1 SEC61A1 LOC102723759 RUVBL1
GH03I128051 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 11.7 -22.3 -22291 4.8 SMAD1 FOXA2 ZFP64 ARID4B SIN3A DMAP1 YY1 POLR2B ZNF766 ZNF207 SEC61A1 GC03M128050 LOC102723759 PIR34686 RNU2-37P RUVBL1-AS1 GC03M128076
GH03I128122 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 11.4 +47.8 47764 2.8 PKNOX1 SMAD1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 RUVBL1 EEFSEC RNU2-37P RUVBL1-AS1 MCM2 PIR39032
GH03I128111 Enhancer 1.2 FANTOM5 Ensembl ENCODE 11.8 +37.5 37503 3.6 NFIB INSM2 FEZF1 ZNF335 ZNF366 RCOR1 FOS KLF13 USF2 CEBPB RUVBL1 RUVBL1-AS1 RNU2-37P RNU6-823P EEFSEC SEC61A1 GATA2 PIR39032
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RUVBL1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RUVBL1-AS1 Gene

Genomic Locations for RUVBL1-AS1 Gene
chr3:128,075,810-128,079,056
(GRCh38/hg38)
Size:
3,247 bases
Orientation:
Plus strand
chr3:127,794,653-127,797,899
(GRCh37/hg19)

Genomic View for RUVBL1-AS1 Gene

Genes around RUVBL1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RUVBL1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RUVBL1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RUVBL1-AS1 Gene

Proteins for RUVBL1-AS1 Gene

Post-translational modifications for RUVBL1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RUVBL1-AS1 Gene

Domains & Families for RUVBL1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RUVBL1-AS1 Gene

Function for RUVBL1-AS1 Gene

Phenotypes From GWAS Catalog for RUVBL1-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RUVBL1-AS1 Gene

Localization for RUVBL1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RUVBL1-AS1 Gene

Pathways & Interactions for RUVBL1-AS1 Gene

SuperPathways for RUVBL1-AS1 Gene

No Data Available

Interacting Proteins for RUVBL1-AS1 Gene

Gene Ontology (GO) - Biological Process for RUVBL1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RUVBL1-AS1 Gene

Drugs & Compounds for RUVBL1-AS1 Gene

No Compound Related Data Available

Transcripts for RUVBL1-AS1 Gene

mRNA/cDNA for RUVBL1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RUVBL1-AS1 Gene

No ASD Table

Relevant External Links for RUVBL1-AS1 Gene

GeneLoc Exon Structure for
RUVBL1-AS1
ECgene alternative splicing isoforms for
RUVBL1-AS1

Expression for RUVBL1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RUVBL1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for RUVBL1-AS1 Gene

This gene is overexpressed in Testis (x5.4).
genes like me logo Genes that share expression patterns with RUVBL1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RUVBL1-AS1 Gene

Orthologs for RUVBL1-AS1 Gene

Evolution for RUVBL1-AS1 Gene

ENSEMBL:
Gene Tree for RUVBL1-AS1 (if available)
TreeFam:
Gene Tree for RUVBL1-AS1 (if available)

No data available for Orthologs for RUVBL1-AS1 Gene

Paralogs for RUVBL1-AS1 Gene

No data available for Paralogs for RUVBL1-AS1 Gene

Variants for RUVBL1-AS1 Gene

Sequence variations from dbSNP and Humsavar for RUVBL1-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000924579 -- 128,075,988(+) C/T non_coding_transcript_variant
rs1000966487 -- 128,075,664(+) C/T upstream_transcript_variant
rs1001356702 -- 128,075,465(+) A/G upstream_transcript_variant
rs1001361919 -- 128,075,266(+) A/G upstream_transcript_variant
rs1001896684 -- 128,075,016(+) G/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RUVBL1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1001879 CNV gain 25217958
nsv1002685 CNV gain 25217958
nsv3991 CNV insertion 18451855

Additional Variant Information for RUVBL1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RUVBL1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RUVBL1-AS1 Gene

Disorders for RUVBL1-AS1 Gene

Additional Disease Information for RUVBL1-AS1

No disorders were found for RUVBL1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RUVBL1-AS1 Gene

Publications for RUVBL1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for RUVBL1-AS1 Gene

Sources for RUVBL1-AS1 Gene

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