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Aliases for RUVBL1-AS1 Gene

Subcategory (RNA class) for RUVBL1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RUVBL1-AS1 Gene

  • RUVBL1 Antisense RNA 1 2 3 5
  • RUVBL1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for RUVBL1-AS1 Gene

Previous GeneCards Identifiers for RUVBL1-AS1 Gene

  • GC00U933280
  • GC03P127795

Summaries for RUVBL1-AS1 Gene

GeneCards Summary for RUVBL1-AS1 Gene

RUVBL1-AS1 (RUVBL1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RUVBL1-AS1 Gene

Genomics for RUVBL1-AS1 Gene

Regulatory Elements for RUVBL1-AS1 Gene

Enhancers for RUVBL1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F128111 1.4 FANTOM5 Ensembl ENCODE 11.8 +37.5 37504 3.6 HDGF INSM2 SIN3A FEZF1 RAD21 YY1 ZNF366 FOS CEBPB USF2 RUVBL1 RNU2-37P RUVBL1-AS1 RNU6-823P EEFSEC SEC61A1 GATA2 PIR39032
GH03F128051 1.1 ENCODE 11.7 -22.3 -22291 4.8 CREB3L1 ZFP64 ARID4B SIN3A DMAP1 YY1 ZNF143 FOS SP3 ZHX2 SEC61A1 RUVBL1-AS1 RNU2-37P LOC102723759 GC03M128076
GH03F128122 1.1 ENCODE 11.4 +47.8 47765 2.8 PKNOX1 CREB3L1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 RUVBL1 RPS15AP16 RNU2-37P RUVBL1-AS1 EEFSEC SEC61A1 PIR39032
GH03F128074 1.4 FANTOM5 ENCODE 0.8 +1.0 984 3.7 PKNOX1 ATF1 CREB3L1 GATA2 ZNF143 KLF13 SP3 YY2 NCOA1 REST GATA2 RUVBL1 SEC61A1 DNAJB8 RUVBL1-AS1 PIR39032
GH03F128079 1.5 FANTOM5 Ensembl ENCODE 0.4 +5.0 5003 3.5 SIN3A THRB RAD21 RARA YY1 ZNF366 FOS USF2 MEF2D TFDP1 GATA2 SEC61A1 EEFSEC DNAJB8 RUVBL1-AS1 PIR39032
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RUVBL1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for RUVBL1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001373272 590 2001 PKNOX1 ATF1 CREB3L1 GATA2 ZNF143 KLF13 SP3 YY2 NCOA1 REST

Genomic Location for RUVBL1-AS1 Gene

Chromosome:
3
Start:
128,075,810 bp from pter
End:
128,079,056 bp from pter
Size:
3,247 bases
Orientation:
Plus strand

Genomic View for RUVBL1-AS1 Gene

Genes around RUVBL1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RUVBL1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RUVBL1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RUVBL1-AS1 Gene

Proteins for RUVBL1-AS1 Gene

Post-translational modifications for RUVBL1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RUVBL1-AS1 Gene

Domains & Families for RUVBL1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RUVBL1-AS1 Gene

Function for RUVBL1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RUVBL1-AS1 Gene

Localization for RUVBL1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RUVBL1-AS1 Gene

Pathways & Interactions for RUVBL1-AS1 Gene

SuperPathways for RUVBL1-AS1 Gene

No Data Available

Interacting Proteins for RUVBL1-AS1 Gene

Gene Ontology (GO) - Biological Process for RUVBL1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RUVBL1-AS1 Gene

Transcripts for RUVBL1-AS1 Gene

mRNA/cDNA for RUVBL1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RUVBL1-AS1 Gene

No ASD Table

Relevant External Links for RUVBL1-AS1 Gene

GeneLoc Exon Structure for
RUVBL1-AS1
ECgene alternative splicing isoforms for
RUVBL1-AS1

Expression for RUVBL1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RUVBL1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for RUVBL1-AS1 Gene

This gene is overexpressed in Testis (x5.4).
genes like me logo Genes that share expression patterns with RUVBL1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RUVBL1-AS1 Gene

Orthologs for RUVBL1-AS1 Gene

Evolution for RUVBL1-AS1 Gene

ENSEMBL:
Gene Tree for RUVBL1-AS1 (if available)
TreeFam:
Gene Tree for RUVBL1-AS1 (if available)

No data available for Orthologs for RUVBL1-AS1 Gene

Paralogs for RUVBL1-AS1 Gene

No data available for Paralogs for RUVBL1-AS1 Gene

Variants for RUVBL1-AS1 Gene

Sequence variations from dbSNP and Humsavar for RUVBL1-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs114114953 -- 128,076,716(+) ACGCG(A/C)GCGCG intron-variant
rs11458310 -- 128,078,665(+) AAAAA(-/T)TGAGG intron-variant
rs115080316 -- 128,075,305(+) GGGAA(G/T)GTCCT intron-variant, upstream-variant-2KB
rs115098924 -- 128,076,020(+) TGGCA(C/T)TGGGA intron-variant, nc-transcript-variant
rs115552902 -- 128,077,694(+) TGTGT(G/T)GCCCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RUVBL1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1001879 CNV gain 25217958
nsv1002685 CNV gain 25217958
nsv3991 CNV insertion 18451855

Relevant External Links for RUVBL1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RUVBL1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RUVBL1-AS1 Gene

Disorders for RUVBL1-AS1 Gene

Relevant External Links for RUVBL1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RUVBL1-AS1

No disorders were found for RUVBL1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RUVBL1-AS1 Gene

Publications for RUVBL1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for RUVBL1-AS1 Gene

Sources for RUVBL1-AS1 Gene

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