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Aliases for RUSC1-AS1 Gene

Subcategory (RNA class) for RUSC1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RUSC1-AS1 Gene

  • RUSC1 Antisense RNA 1 2 3 4 5
  • RUSC1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • RUSC1 Antisense Gene Protein 1 3 4
  • C1orf104 3 4
  • Chromosome 1 Open Reading Frame 104 2

External Ids for RUSC1-AS1 Gene

Previous HGNC Symbols for RUSC1-AS1 Gene

  • C1orf104

Previous GeneCards Identifiers for RUSC1-AS1 Gene

  • GC01M155287

Summaries for RUSC1-AS1 Gene

GeneCards Summary for RUSC1-AS1 Gene

RUSC1-AS1 (RUSC1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for RUSC1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RUSC1-AS1 Gene

Genomics for RUSC1-AS1 Gene

GeneHancer (GH) Regulatory Elements for RUSC1-AS1 Gene

Promoters and enhancers for RUSC1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I155319 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.8 +1.0 1049 6.3 HDGF PKNOX1 SMAD1 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF213 RUSC1 RUSC1-AS1 DPM3 SCAMP3 FAM189B GBA MIR555 ASH1L CLK2 RNU6-1297P
GH01I155242 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 112.5 +79.9 79934 2.9 FEZF1 YBX1 IRF4 YY1 ZNF213 E2F8 ZNF416 ZNF143 ZNF548 SP3 GBA KHDC4 GON4L CLK2 ENSG00000271267 MSTO1 MSTO2P RUSC1-AS1 THBS3 SHC1
GH01I154998 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 44.8 +319.7 319725 11.3 CLOCK MLX YBX1 DMAP1 YY1 ZNF213 E2F8 ZNF416 ZNF143 SP3 ZBTB7B GON4L CLK2 UBAP2L KHDC4 ENSG00000271267 RUSC1-AS1 MSTO1 THBS3 MSTO2P
GH01I155222 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 54.7 +98.4 98445 5.9 ZFP64 DMAP1 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC ZC3H11A MEF2D GBAP1 KHDC4 MSTO1 ENSG00000271267 GON4L MSTO2P CLK2 RUSC1-AS1 LOC101928120 THBS3
GH01I154935 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 30.3 +386.5 386525 3.8 CLOCK MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 E2F8 ZNF143 SP3 ENSG00000270361 PMVK GON4L CLK2 KHDC4 ENSG00000271267 UBAP2L THBS3 RUSC1-AS1 CRTC2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RUSC1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RUSC1-AS1 Gene

Genomic Locations for RUSC1-AS1 Gene
chr1:155,316,863-155,324,176
(GRCh38/hg38)
Size:
7,314 bases
Orientation:
Minus strand
chr1:155,286,654-155,293,967
(GRCh37/hg19)

Genomic View for RUSC1-AS1 Gene

Genes around RUSC1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RUSC1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RUSC1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RUSC1-AS1 Gene

Proteins for RUSC1-AS1 Gene

  • Protein details for RUSC1-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q66K80-RUAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein RUSC1-AS1
    Protein Accession:
    Q66K80
    Secondary Accessions:
    • Q8NA07

    Protein attributes for RUSC1-AS1 Gene

    Size:
    236 amino acids
    Molecular mass:
    24494 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for RUSC1-AS1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RUSC1-AS1 Gene

Post-translational modifications for RUSC1-AS1 Gene

No Post-translational modifications

Other Protein References for RUSC1-AS1 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for RUSC1-AS1 Gene

Domains & Families for RUSC1-AS1 Gene

Protein Domains for RUSC1-AS1 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for RUSC1-AS1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RUSC1-AS1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for RUSC1-AS1 Gene

Function for RUSC1-AS1 Gene

Phenotypes From GWAS Catalog for RUSC1-AS1 Gene

Gene Ontology (GO) - Molecular Function for RUSC1-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with RUSC1-AS1: view

Phenotypes for RUSC1-AS1 Gene

genes like me logo Genes that share phenotypes with RUSC1-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RUSC1-AS1 Gene

Localization for RUSC1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RUSC1-AS1 Gene

Pathways & Interactions for RUSC1-AS1 Gene

SuperPathways for RUSC1-AS1 Gene

No Data Available

Interacting Proteins for RUSC1-AS1 Gene

Selected Interacting proteins: Q66K80-RUAS1_HUMAN for RUSC1-AS1 Gene via IID UniProtKB

Gene Ontology (GO) - Biological Process for RUSC1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RUSC1-AS1 Gene

Drugs & Compounds for RUSC1-AS1 Gene

No Compound Related Data Available

Transcripts for RUSC1-AS1 Gene

mRNA/cDNA for RUSC1-AS1 Gene

Unigene Clusters for RUSC1-AS1 Gene

RUSC1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RUSC1-AS1 Gene

No ASD Table

Relevant External Links for RUSC1-AS1 Gene

GeneLoc Exon Structure for
RUSC1-AS1
ECgene alternative splicing isoforms for
RUSC1-AS1

Expression for RUSC1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RUSC1-AS1 Gene

Protein differential expression in normal tissues from HIPED for RUSC1-AS1 Gene

This gene is overexpressed in Testis (22.2), Colon (18.8), Pancreas (7.6), and Ovary (6.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for RUSC1-AS1 Gene



Protein tissue co-expression partners for RUSC1-AS1 Gene

SOURCE GeneReport for Unigene cluster for RUSC1-AS1 Gene:

Hs.650801
genes like me logo Genes that share expression patterns with RUSC1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RUSC1-AS1 Gene

Orthologs for RUSC1-AS1 Gene

Evolution for RUSC1-AS1 Gene

ENSEMBL:
Gene Tree for RUSC1-AS1 (if available)
TreeFam:
Gene Tree for RUSC1-AS1 (if available)

No data available for Orthologs for RUSC1-AS1 Gene

Paralogs for RUSC1-AS1 Gene

(1) SIMAP similar genes for RUSC1-AS1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with RUSC1-AS1: view

No data available for Paralogs for RUSC1-AS1 Gene

Variants for RUSC1-AS1 Gene

Sequence variations from dbSNP and Humsavar for RUSC1-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1003785765 -- 155,323,970(-) G/A intron_variant
rs1003836399 -- 155,324,261(-) G/C upstream_transcript_variant
rs1004822135 -- 155,324,474(-) C/T upstream_transcript_variant
rs1005415302 -- 155,323,723(-) G/C intron_variant
rs1005426257 -- 155,323,297(-) T/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for RUSC1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv3n68 CNV loss 17160897
esv2758971 CNV gain 17122850
esv33869 CNV loss 17666407
nsv831636 CNV loss 17160897
nsv946413 CNV duplication 23825009

Additional Variant Information for RUSC1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RUSC1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RUSC1-AS1 Gene

Disorders for RUSC1-AS1 Gene

Additional Disease Information for RUSC1-AS1

No disorders were found for RUSC1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RUSC1-AS1 Gene

Publications for RUSC1-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 2 3 4 58
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 3 4 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  4. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 58
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for RUSC1-AS1 Gene

Sources for RUSC1-AS1 Gene

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