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Aliases for RUSC1-AS1 Gene

Subcategory (RNA class) for RUSC1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RUSC1-AS1 Gene

  • RUSC1 Antisense RNA 1 2 3 4 5
  • RUSC1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • RUSC1 Antisense Gene Protein 1 3 4
  • C1orf104 3 4
  • Chromosome 1 Open Reading Frame 104 2

External Ids for RUSC1-AS1 Gene

Previous HGNC Symbols for RUSC1-AS1 Gene

  • C1orf104

Previous GeneCards Identifiers for RUSC1-AS1 Gene

  • GC01M155287

Summaries for RUSC1-AS1 Gene

GeneCards Summary for RUSC1-AS1 Gene

RUSC1-AS1 (RUSC1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for RUSC1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RUSC1-AS1 Gene

Genomics for RUSC1-AS1 Gene

Regulatory Elements for RUSC1-AS1 Gene

Enhancers for RUSC1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H155242 1.5 ENCODE dbSUPER 102.7 +79.9 79934 2 FEZF1 YBX1 YY1 ZNF416 ZNF143 ZNF548 SP3 ZFP41 MEF2D ZNF610 KIAA0907 GON4L ENSG00000271267 CLK2 MSTO1 MSTO2P THBS3 RUSC1-AS1 LOC101928120 SHC1
GH01H154998 1.9 FANTOM5 ENCODE dbSUPER 43.2 +319.7 319725 11 MLX YBX1 DMAP1 YY1 ZNF416 ZNF143 SP3 NFYC ZC3H11A PPARGC1A GON4L CLK2 UBAP2L KIAA0907 ENSG00000271267 MSTO1 RUSC1-AS1 THBS3 YY1AP1 FLAD1
GH01H155222 1.4 ENCODE dbSUPER 41.4 +98.4 98446 5 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 KIAA0907 MSTO1 ENSG00000271267 MSTO2P GON4L CLK2 LOC101928120 THBS3 RUSC1-AS1 GBAP1
GH01H154351 1.6 Ensembl ENCODE dbSUPER 30.6 +971.0 970993 3 HDGF PKNOX1 FOXA2 ARNT ZFP64 ARID4B DMAP1 YY1 ZNF766 FOS CLK2 UBAP2L CHTOP CRTC2 RUSC1-AS1 SLC27A3 ILF2 FLAD1 CREB3L4 THBS3
GH01H155123 1.7 FANTOM5 ENCODE dbSUPER 25.4 +196.2 196154 8 PKNOX1 FOXA2 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 KIAA0907 GON4L CLK2 UBAP2L MSTO1 ENSG00000271267 MSTO2P LOC101928120 RUSC1-AS1 SHC1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RUSC1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for RUSC1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000254617 76 2601 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 ZNF207

Genomic Location for RUSC1-AS1 Gene

Chromosome:
1
Start:
155,316,863 bp from pter
End:
155,324,176 bp from pter
Size:
7,314 bases
Orientation:
Minus strand

Genomic View for RUSC1-AS1 Gene

Genes around RUSC1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RUSC1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RUSC1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RUSC1-AS1 Gene

Proteins for RUSC1-AS1 Gene

  • Protein details for RUSC1-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q66K80-RUAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein RUSC1-AS1
    Protein Accession:
    Q66K80
    Secondary Accessions:
    • Q8NA07

    Protein attributes for RUSC1-AS1 Gene

    Size:
    236 amino acids
    Molecular mass:
    24494 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for RUSC1-AS1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RUSC1-AS1 Gene

Post-translational modifications for RUSC1-AS1 Gene

No Post-translational modifications

Other Protein References for RUSC1-AS1 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for RUSC1-AS1 Gene

Domains & Families for RUSC1-AS1 Gene

Protein Domains for RUSC1-AS1 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for RUSC1-AS1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RUSC1-AS1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for RUSC1-AS1 Gene

Function for RUSC1-AS1 Gene

Phenotypes From GWAS Catalog for RUSC1-AS1 Gene

Gene Ontology (GO) - Molecular Function for RUSC1-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with RUSC1-AS1: view

Phenotypes for RUSC1-AS1 Gene

genes like me logo Genes that share phenotypes with RUSC1-AS1: view

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RUSC1-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RUSC1-AS1 Gene

Localization for RUSC1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RUSC1-AS1 Gene

Pathways & Interactions for RUSC1-AS1 Gene

SuperPathways for RUSC1-AS1 Gene

No Data Available

Interacting Proteins for RUSC1-AS1 Gene

Selected Interacting proteins: Q66K80-RUAS1_HUMAN for RUSC1-AS1 Gene via IID UniProtKB

Gene Ontology (GO) - Biological Process for RUSC1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RUSC1-AS1 Gene

Drugs & Compounds for RUSC1-AS1 Gene

No Compound Related Data Available

Transcripts for RUSC1-AS1 Gene

mRNA/cDNA for RUSC1-AS1 Gene

Unigene Clusters for RUSC1-AS1 Gene

RUSC1 antisense RNA 1:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RUSC1-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RUSC1-AS1 Gene

No ASD Table

Relevant External Links for RUSC1-AS1 Gene

GeneLoc Exon Structure for
RUSC1-AS1
ECgene alternative splicing isoforms for
RUSC1-AS1

Expression for RUSC1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RUSC1-AS1 Gene

Protein differential expression in normal tissues from HIPED for RUSC1-AS1 Gene

This gene is overexpressed in Testis (22.2), Colon (18.8), Pancreas (7.6), and Ovary (6.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for RUSC1-AS1 Gene



Protein tissue co-expression partners for RUSC1-AS1 Gene

SOURCE GeneReport for Unigene cluster for RUSC1-AS1 Gene:

Hs.650801
genes like me logo Genes that share expression patterns with RUSC1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RUSC1-AS1 Gene

Orthologs for RUSC1-AS1 Gene

Evolution for RUSC1-AS1 Gene

ENSEMBL:
Gene Tree for RUSC1-AS1 (if available)
TreeFam:
Gene Tree for RUSC1-AS1 (if available)

No data available for Orthologs for RUSC1-AS1 Gene

Paralogs for RUSC1-AS1 Gene

(1) SIMAP similar genes for RUSC1-AS1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with RUSC1-AS1: view

No data available for Paralogs for RUSC1-AS1 Gene

Variants for RUSC1-AS1 Gene

Sequence variations from dbSNP and Humsavar for RUSC1-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1003785765 -- 155,323,970(+) GGGGA(A/G)TCTGG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1003836399 -- 155,324,261(+) TCTCC(C/G)CGAGT intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1004822135 -- 155,324,474(+) CGGTG(C/T)GCTGG intron-variant, nc-transcript-variant, upstream-variant-2KB, reference, synonymous-codon, utr-variant-5-prime
rs1005415302 -- 155,323,723(+) ACCCC(C/G)CCAGG intron-variant, nc-transcript-variant, upstream-variant-2KB, reference, missense, utr-variant-5-prime
rs1005426257 -- 155,323,297(+) GGTTA(G/T)GGGAC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RUSC1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv3n68 CNV loss 17160897
esv2758971 CNV gain 17122850
esv33869 CNV loss 17666407
nsv831636 CNV loss 17160897
nsv946413 CNV duplication 23825009

Relevant External Links for RUSC1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RUSC1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RUSC1-AS1 Gene

Disorders for RUSC1-AS1 Gene

Relevant External Links for RUSC1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RUSC1-AS1

No disorders were found for RUSC1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RUSC1-AS1 Gene

Publications for RUSC1-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 2 3 4 60
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 3 4 60
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 60
  4. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 60
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for RUSC1-AS1 Gene

Sources for RUSC1-AS1 Gene

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