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Aliases for RUSC1 Gene

Aliases for RUSC1 Gene

  • RUN And SH3 Domain Containing 1 2 3
  • New Molecule Containing SH3 At The Carboxy-Terminus 3 4
  • NESCA 3 4
  • RUN And SH3 Domain-Containing Protein 1 3

External Ids for RUSC1 Gene

Summaries for RUSC1 Gene

GeneCards Summary for RUSC1 Gene

RUSC1 (RUN And SH3 Domain Containing 1) is a Protein Coding gene. Among its related pathways are Trk receptor signaling mediated by the MAPK pathway. GO annotations related to this gene include actin binding and SH3/SH2 adaptor activity. An important paralog of this gene is RUSC2.

UniProtKB/Swiss-Prot for RUSC1 Gene

  • Putative signaling adapter which may play a role in neuronal differentiation. May be involved in regulation of NGF-dependent neurite outgrowth. Proposed to play a role in neuronal vesicular trafficking, specifically involving pre-synaptic membrane proteins. Seems to be involved in signaling pathways that are regulated by the prolonged activation of MAPK. Can regulate the polyubiquitination of IKBKG and thus may be involved in regulation of the NF-kappa-B pathway.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RUSC1 Gene

Genomics for RUSC1 Gene

Genomic Location for RUSC1 Gene

Start:
155,320,849 bp from pter
End:
155,331,118 bp from pter
Size:
10,270 bases
Orientation:
Plus strand

Genomic View for RUSC1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RUSC1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RUSC1 Gene

Regulatory Elements for RUSC1 Gene

Proteins for RUSC1 Gene

  • Protein details for RUSC1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BVN2-RUSC1_HUMAN
    Recommended name:
    RUN and SH3 domain-containing protein 1
    Protein Accession:
    Q9BVN2
    Secondary Accessions:
    • B3KWM9
    • Q5T9U9
    • Q5T9V0
    • Q5T9V1
    • Q5T9V2
    • Q9UPY4
    • Q9Y4T5

    Protein attributes for RUSC1 Gene

    Size:
    902 amino acids
    Molecular mass:
    96444 Da
    Quaternary structure:
    • Interacts with IKBKG and TRAF6. Interacts with F-actin, acetylated actin, TUBB3, STX1A, KIF5B and KLC1 (By similarity).
    SequenceCaution:
    • Sequence=AAH52277.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAG54191.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for RUSC1 Gene

    Alternative splice isoforms for RUSC1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RUSC1 Gene

Proteomics data for RUSC1 Gene at MOPED

Post-translational modifications for RUSC1 Gene

No data available for DME Specific Peptides for RUSC1 Gene

Domains for RUSC1 Gene

Protein Domains for RUSC1 Gene

InterPro:
Blocks:
ProtoNet:

UniProtKB/Swiss-Prot:

RUSC1_HUMAN
Domain:
  • The RUN domain is necessary for NGF induced nuclear redistribution:
    • Q9BVN2
  • Contains 1 RUN domain.:
    • Q9BVN2
  • Contains 1 SH3 domain.:
    • Q9BVN2
genes like me logo Genes that share domains with RUSC1: view

No data available for Gene Families for RUSC1 Gene

Function for RUSC1 Gene

Molecular function for RUSC1 Gene

UniProtKB/Swiss-Prot Function: Putative signaling adapter which may play a role in neuronal differentiation. May be involved in regulation of NGF-dependent neurite outgrowth. Proposed to play a role in neuronal vesicular trafficking, specifically involving pre-synaptic membrane proteins. Seems to be involved in signaling pathways that are regulated by the prolonged activation of MAPK. Can regulate the polyubiquitination of IKBKG and thus may be involved in regulation of the NF-kappa-B pathway.

Gene Ontology (GO) - Molecular Function for RUSC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003779 actin binding ISS --
GO:0005070 SH3/SH2 adaptor activity TAS 10760598
GO:0005515 protein binding IPI 19365808
genes like me logo Genes that share ontologies with RUSC1: view

miRNA for RUSC1 Gene

miRTarBase miRNAs that target RUSC1

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for RUSC1 Gene

Localization for RUSC1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RUSC1 Gene

Cytoplasm. Nucleus. Cytoplasm, cytoskeleton. Cytoplasmic vesicle. Early endosome. Cell junction, synapse, postsynaptic cell membrane, postsynaptic density. Golgi apparatus. Note=Translocated to the nuclear envelope upon stimulation with NGF. Associated with membranes and microtubules (By similarity). {ECO:0000250}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RUSC1 Gene COMPARTMENTS Subcellular localization image for RUSC1 gene
Compartment Confidence
nucleus 5
cytoskeleton 4
cytosol 4
endosome 4
golgi apparatus 4
plasma membrane 3
mitochondrion 1

Gene Ontology (GO) - Cellular Components for RUSC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
GO:0005737 cytoplasm IDA --
GO:0005769 early endosome ISS --
GO:0005794 Golgi apparatus ISS --
GO:0005874 microtubule IEA --
genes like me logo Genes that share ontologies with RUSC1: view

Pathways for RUSC1 Gene

genes like me logo Genes that share pathways with RUSC1: view

Pathways by source for RUSC1 Gene

1 BioSystems pathway for RUSC1 Gene

Gene Ontology (GO) - Biological Process for RUSC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000209 protein polyubiquitination IDA 19365808
GO:0009967 positive regulation of signal transduction TAS 10760598
genes like me logo Genes that share ontologies with RUSC1: view

Transcripts for RUSC1 Gene

Unigene Clusters for RUSC1 Gene

RUN and SH3 domain containing 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RUSC1 Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4a · 4b ^ 5a · 5b · 5c ^ 6a · 6b ^ 7 ^ 8 ^ 9a · 9b · 9c · 9d ^ 10 ^ 11 ^ 12a · 12b · 12c · 12d · 12e ^ 13a ·
SP1: - - - - - - - - - - -
SP2: - - -
SP3: - -
SP4: - - - - - - -
SP5: - -
SP6: - - - - - - -
SP7: - - - - - -
SP8: - - - - - - - - -
SP9: - - - - - - - -
SP10: - -
SP11: - - - - - - - - -
SP12: - - - - - - - - - -
SP13: - - - - - -
SP14: -
SP15: -
SP16: - - - - - - -
SP17: - -
SP18: - - - - -
SP19:
SP20: -
SP21:
SP22:

ExUns: 13b ^ 14a · 14b ^ 15a · 15b · 15c · 15d · 15e
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:
SP13:
SP14:
SP15:
SP16:
SP17:
SP18: - -
SP19:
SP20:
SP21:
SP22: - -

Relevant External Links for RUSC1 Gene

GeneLoc Exon Structure for
RUSC1
ECgene alternative splicing isoforms for
RUSC1

Expression for RUSC1 Gene

mRNA expression in normal human tissues for RUSC1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for RUSC1 Gene

SOURCE GeneReport for Unigene cluster for RUSC1 Gene Hs.226499

mRNA Expression by UniProt/SwissProt for RUSC1 Gene

Q9BVN2-RUSC1_HUMAN
Tissue specificity: Predominantly expressed in brain
genes like me logo Genes that share expressions with RUSC1: view

Orthologs for RUSC1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RUSC1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RUSC1 36
  • 99.82 (n)
  • 99.67 (a)
RUSC1 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RUSC1 36
  • 87.42 (n)
  • 88.31 (a)
dog
(Canis familiaris)
Mammalia RUSC1 36
  • 82.81 (n)
  • 83.26 (a)
RUSC1 37
  • 82 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rusc1 36
  • 84.09 (n)
  • 85.21 (a)
Rusc1 16
Rusc1 37
  • 70 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia RUSC1 37
  • 62 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC100360417 36
  • 83.93 (n)
  • 85.12 (a)
African clawed frog
(Xenopus laevis)
Amphibia Xl.3537 36
zebrafish
(Danio rerio)
Actinopterygii rusc1 37
  • 12 (a)
OneToOne
Species with no ortholog for RUSC1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RUSC1 Gene

ENSEMBL:
Gene Tree for RUSC1 (if available)
TreeFam:
Gene Tree for RUSC1 (if available)

Paralogs for RUSC1 Gene

Paralogs for RUSC1 Gene

Selected SIMAP similar genes for RUSC1 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with RUSC1: view

Variants for RUSC1 Gene

Sequence variations from dbSNP and Humsavar for RUSC1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs9427215 -- 155,329,385(+) ctggc(C/T)ACTAA intron-variant
rs12061020 - 155,328,227(+) GCCTT(C/T)TCCTC reference, missense, nc-transcript-variant
rs12728412 -- 155,329,954(+) tcaag(A/G)aaaaa intron-variant
rs12745819 -- 155,329,902(+) gttga(G/T)atcac intron-variant
rs35117735 -- 155,330,306(+) CCACT(A/G)AGCCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RUSC1 Gene

Variant ID Type Subtype PubMed ID
dgv3n68 CNV Loss 17160897
dgv132e1 CNV Complex 17122850
nsv872457 CNV Loss 21882294
nsv831636 CNV Loss 17160897
esv33869 CNV Loss 17666407

Relevant External Links for RUSC1 Gene

HapMap Linkage Disequilibrium report
RUSC1

Disorders for RUSC1 Gene

No disorders were found for RUSC1 Gene.

No data available for UniProtKB/Swiss-Prot for RUSC1 Gene

Publications for RUSC1 Gene

  1. Nesca, a novel adapter, translocates to the nuclear envelope and regulates neurotrophin-induced neurite outgrowth. (PMID: 15024033) MacDonald J.I.S. … Meakin S.O. (J. Cell Biol. 2004) 3 4 23
  2. Molecular cloning and characterization of a novel human gene (NESCA) which encodes a putative adapter protein containing SH3. (PMID: 10760598) Matsuda S. … Hamaguchi M. (Biochim. Biophys. Acta 2000) 2 3 4
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Signal sequence and keyword trap in silico for selection of full- length human cDNAs encoding secretion or membrane proteins from oligo- capped cDNA libraries. (PMID: 16303743) Otsuki T. … Isogai T. (DNA Res. 2005) 3 4

Products for RUSC1 Gene

Sources for RUSC1 Gene

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