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Aliases for RUNX1-IT1 Gene

Subcategory (RNA class) for RUNX1-IT1 Gene

lncRNA

Quality Score for this RNA gene is

2

Aliases for RUNX1-IT1 Gene

  • RUNX1 Intronic Transcript 1 2 3 4
  • RUNX1 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • C21orf96 3 4
  • Chromosome 21 Open Reading Frame 96 2

External Ids for RUNX1-IT1 Gene

ORGUL Members for RUNX1-IT1 Gene

Previous HGNC Symbols for RUNX1-IT1 Gene

  • C21orf96

Previous GeneCards Identifiers for RUNX1-IT1 Gene

  • GC21M036411

Summaries for RUNX1-IT1 Gene

GeneCards Summary for RUNX1-IT1 Gene

RUNX1-IT1 (RUNX1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RUNX1-IT1 Gene

Genomics for RUNX1-IT1 Gene

Genomic Location for RUNX1-IT1 Gene

Start:
35,037,925 bp from pter
End:
35,039,426 bp from pter
Size:
1,502 bases
Orientation:
Minus strand

Genomic View for RUNX1-IT1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RUNX1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RUNX1-IT1 Gene

No data available for Regulatory Elements for RUNX1-IT1 Gene

Proteins for RUNX1-IT1 Gene

  • Protein details for RUNX1-IT1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H7H1-RUIT1_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by RUNX1-IT1
    Protein Accession:
    Q9H7H1
    Secondary Accessions:

    Protein attributes for RUNX1-IT1 Gene

    Size:
    129 amino acids
    Molecular mass:
    14673 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RUNX1-IT1 Gene

Proteomics data for RUNX1-IT1 Gene at MOPED

Post-translational modifications for RUNX1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RUNX1-IT1 Gene

Domains for RUNX1-IT1 Gene

Gene Families for RUNX1-IT1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Protein Domains for RUNX1-IT1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RUNX1-IT1: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RUNX1-IT1 Gene

Function for RUNX1-IT1 Gene

Phenotypes for RUNX1-IT1 Gene

genes like me logo Genes that share phenotypes with RUNX1-IT1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RUNX1-IT1 Gene

Localization for RUNX1-IT1 Gene

Gene Ontology (GO) - Cellular Components for RUNX1-IT1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005829 cytosol IDA 16780588
genes like me logo Genes that share ontologies with RUNX1-IT1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for RUNX1-IT1 Gene

Pathways for RUNX1-IT1 Gene

SuperPathways for RUNX1-IT1 Gene

No Data Available

Interacting Proteins for RUNX1-IT1 Gene

Selected Interacting proteins: Q9H7H1-RUIT1_HUMAN for RUNX1-IT1 Gene via I2D

Symbol External ID(s) Details
PHLDA3

Gene Ontology (GO) - Biological Process for RUNX1-IT1 Gene

None

No data available for Pathways by source for RUNX1-IT1 Gene

Transcripts for RUNX1-IT1 Gene

mRNA/cDNA for RUNX1-IT1 Gene

(3) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:
(1) REFSEQ mRNAs :

Unigene Clusters for RUNX1-IT1 Gene

RUNX1 intronic transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RUNX1-IT1 Gene

No ASD Table

Relevant External Links for RUNX1-IT1 Gene

GeneLoc Exon Structure for
RUNX1-IT1
ECgene alternative splicing isoforms for
RUNX1-IT1

Expression for RUNX1-IT1 Gene

mRNA expression in normal human tissues for RUNX1-IT1 Gene

SOURCE GeneReport for Unigene cluster for RUNX1-IT1 Gene Hs.672131

genes like me logo Genes that share expressions with RUNX1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for RUNX1-IT1 Gene

Orthologs for RUNX1-IT1 Gene

No data available for Orthologs and Evolution for RUNX1-IT1 Gene

Paralogs for RUNX1-IT1 Gene

No data available for Paralogs for RUNX1-IT1 Gene

Variants for RUNX1-IT1 Gene

Relevant External Links for RUNX1-IT1 Gene

HapMap Linkage Disequilibrium report
RUNX1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for RUNX1-IT1 Gene

Disorders for RUNX1-IT1 Gene

No disorders were found for RUNX1-IT1 Gene.

No data available for UniProtKB/Swiss-Prot for RUNX1-IT1 Gene

Publications for RUNX1-IT1 Gene

  1. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M. … Yaspo M.-L. (Nature 2000) 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. Cell array-based intracellular localization screening reveals novel functional features of human chromosome 21 proteins. (PMID: 16780588) Hu Y.H. … Janitz M. (BMC Genomics 2006) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for RUNX1-IT1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate RUNX1-IT1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for RUNX1-IT1
    • Block miRNA regulation of RUNX1-IT1 using miScript Target Protectors

    Sources for RUNX1-IT1 Gene

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