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Aliases for RUNX1-IT1 Gene

Subcategory (RNA class) for RUNX1-IT1 Gene


Quality Score for this RNA gene is


Aliases for RUNX1-IT1 Gene

  • RUNX1 Intronic Transcript 1 2 3
  • RUNX1 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • Chromosome 21 Open Reading Frame 96 2
  • C21orf96 3

External Ids for RUNX1-IT1 Gene

ORGUL Members for RUNX1-IT1 Gene

Previous HGNC Symbols for RUNX1-IT1 Gene

  • C21orf96

Previous GeneCards Identifiers for RUNX1-IT1 Gene

  • GC21M036411

Summaries for RUNX1-IT1 Gene

GeneCards Summary for RUNX1-IT1 Gene

RUNX1-IT1 (RUNX1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RUNX1-IT1 Gene

Genomics for RUNX1-IT1 Gene

Regulatory Elements for RUNX1-IT1 Gene

Enhancers for RUNX1-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21F035038 1.8 FANTOM5 Ensembl ENCODE 0.4 -6.3 -6307 13.5 PKNOX1 CREB3L1 ARID4B FEZF1 ZNF2 ZNF302 ZNF143 FOS KLF13 ZNF263 C21orf140 RPL23AP3 RUNX1 RUNX1-IT1 GC21M035098
GH21F035035 0.8 Ensembl ENCODE 0.8 +2.2 2217 2.9 ZNF121 USF1 IKZF1 ZNF175 RAD21 RUNX1-IT1 GC21P034943
GH21F035024 1.3 Ensembl ENCODE 0.4 +11.8 11784 6.6 HDGF PKNOX1 ARNT CBX5 CEBPZ JUNB REST MEF2D SMARCA4 RCOR2 RUNX1-IT1 GC21P034943
GH21F035018 1.5 FANTOM5 Ensembl ENCODE 0.3 +19.4 19404 2.6 ATF1 ARID4B DMAP1 ZSCAN9 RAD21 RARA ZNF121 HSF1 CREM MIXL1 RUNX1 RUNX1-IT1 GC21P034943
GH21F035009 1.2 Ensembl ENCODE 0.3 +28.1 28081 3.4 ATF1 PKNOX1 CREB3L1 ARID4B SIN3A ZNF207 FOS KLF13 KDM4B SP3 C21orf140 RUNX1-IT1 GC21P034943
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RUNX1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for RUNX1-IT1 Gene

35,037,925 bp from pter
35,039,426 bp from pter
1,502 bases
Minus strand

Genomic View for RUNX1-IT1 Gene

Genes around RUNX1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RUNX1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RUNX1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RUNX1-IT1 Gene

Proteins for RUNX1-IT1 Gene

Post-translational modifications for RUNX1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RUNX1-IT1 Gene

Domains & Families for RUNX1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RUNX1-IT1 Gene

Function for RUNX1-IT1 Gene

Phenotypes for RUNX1-IT1 Gene

genes like me logo Genes that share phenotypes with RUNX1-IT1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RUNX1-IT1 Gene

Localization for RUNX1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RUNX1-IT1 Gene

Pathways & Interactions for RUNX1-IT1 Gene

SuperPathways for RUNX1-IT1 Gene

No Data Available

Interacting Proteins for RUNX1-IT1 Gene

Gene Ontology (GO) - Biological Process for RUNX1-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for RUNX1-IT1 Gene

Transcripts for RUNX1-IT1 Gene

mRNA/cDNA for RUNX1-IT1 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:

Unigene Clusters for RUNX1-IT1 Gene

RUNX1 intronic transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RUNX1-IT1 Gene

No ASD Table

Relevant External Links for RUNX1-IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RUNX1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RUNX1-IT1 Gene

SOURCE GeneReport for Unigene cluster for RUNX1-IT1 Gene:

genes like me logo Genes that share expression patterns with RUNX1-IT1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RUNX1-IT1 Gene

Orthologs for RUNX1-IT1 Gene

No data available for Orthologs and Evolution for RUNX1-IT1 Gene

Paralogs for RUNX1-IT1 Gene

No data available for Paralogs for RUNX1-IT1 Gene

Variants for RUNX1-IT1 Gene

Sequence variations from dbSNP and Humsavar for RUNX1-IT1 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs10154236 -- 35,040,785(+) aaaaa(A/C)aaaaa intron-variant, upstream-variant-2KB
rs112727526 -- 35,038,736(+) TATAT(-/C)CCTAA intron-variant, nc-transcript-variant
rs113560588 -- 35,040,729(+) TGGGG(C/T)CACTG intron-variant, upstream-variant-2KB
rs114131737 -- 35,038,118(+) ACCAT(A/G)CAAAG intron-variant, nc-transcript-variant
rs114429593 -- 35,039,463(+) AGTTA(C/T)ATAAT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RUNX1-IT1 Gene

Variant ID Type Subtype PubMed ID
esv34068 CNV loss 18971310
nsv1059864 CNV loss 25217958
nsv1065948 CNV gain 25217958
nsv482991 CNV gain 15286789

Relevant External Links for RUNX1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RUNX1-IT1 Gene

Disorders for RUNX1-IT1 Gene

Relevant External Links for RUNX1-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for RUNX1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RUNX1-IT1 Gene

Publications for RUNX1-IT1 Gene

  1. Cell array-based intracellular localization screening reveals novel functional features of human chromosome 21 proteins. (PMID: 16780588) Hu Y.H. … Janitz M. (BMC Genomics 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  4. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M. … Yaspo M.-L. (Nature 2000) 3 64

Products for RUNX1-IT1 Gene

Sources for RUNX1-IT1 Gene

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