Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RUNX1-IT1 Gene

Subcategory (RNA class) for RUNX1-IT1 Gene


Quality Score for this RNA gene is


Aliases for RUNX1-IT1 Gene

  • RUNX1 Intronic Transcript 1 2 3
  • RUNX1 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • Chromosome 21 Open Reading Frame 96 2
  • C21orf96 3

External Ids for RUNX1-IT1 Gene

ORGUL Members for RUNX1-IT1 Gene

Previous HGNC Symbols for RUNX1-IT1 Gene

  • C21orf96

Previous GeneCards Identifiers for RUNX1-IT1 Gene

  • GC21M036411

Summaries for RUNX1-IT1 Gene

GeneCards Summary for RUNX1-IT1 Gene

RUNX1-IT1 (RUNX1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for RUNX1-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RUNX1-IT1 Gene

Genomics for RUNX1-IT1 Gene

Regulatory Elements for RUNX1-IT1 Gene

Enhancers for RUNX1-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21H035040 1.8 FANTOM5 ENCODE dbSUPER 0.4 -7.2 -7199 11.8 HDGF PKNOX1 ARID4B FEZF1 ZNF2 ZNF766 CBX5 ZNF302 ZNF143 ZNF207 SMIM11A RPL23AP3 C21orf140 RUNX1 RUNX1-IT1 GC21M035098
GH21H035038 1 ENCODE dbSUPER 0.7 -0.4 -385 1.7 SOX13 PKNOX1 FOXA2 CEBPG RAD21 ZNF644 RARA TEAD3 NR2F6 CREM RUNX1-IT1 GC21M035098
GH21H035024 1.6 Ensembl ENCODE dbSUPER 0.4 +11.8 11784 6.6 HDGF PKNOX1 ARNT ZNF766 CBX5 JUNB REST ZNF592 MEF2D SMARCA4 RUNX1-IT1 GC21P034943
GH21H035035 0.8 ENCODE dbSUPER 0.7 +2.2 2217 2.9 FOXA2 ZSCAN4 IKZF1 ZNF175 MLLT1 RAD21 RUNX1-IT1 GC21P034943
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RUNX1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RUNX1-IT1 Gene

Genomic Locations for RUNX1-IT1 Gene
1,502 bases
Minus strand

Genomic View for RUNX1-IT1 Gene

Genes around RUNX1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RUNX1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RUNX1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RUNX1-IT1 Gene

Proteins for RUNX1-IT1 Gene

Post-translational modifications for RUNX1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RUNX1-IT1 Gene

Domains & Families for RUNX1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RUNX1-IT1 Gene

Function for RUNX1-IT1 Gene

Phenotypes From GWAS Catalog for RUNX1-IT1 Gene

Phenotypes for RUNX1-IT1 Gene

genes like me logo Genes that share phenotypes with RUNX1-IT1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RUNX1-IT1 Gene

Localization for RUNX1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RUNX1-IT1 Gene

Pathways & Interactions for RUNX1-IT1 Gene

SuperPathways for RUNX1-IT1 Gene

No Data Available

Interacting Proteins for RUNX1-IT1 Gene

Gene Ontology (GO) - Biological Process for RUNX1-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for RUNX1-IT1 Gene

Drugs & Compounds for RUNX1-IT1 Gene

No Compound Related Data Available

Transcripts for RUNX1-IT1 Gene

mRNA/cDNA for RUNX1-IT1 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:

Unigene Clusters for RUNX1-IT1 Gene

RUNX1 intronic transcript 1 (non-protein coding):
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RUNX1-IT1 Gene

No ASD Table

Relevant External Links for RUNX1-IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RUNX1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RUNX1-IT1 Gene

SOURCE GeneReport for Unigene cluster for RUNX1-IT1 Gene:

genes like me logo Genes that share expression patterns with RUNX1-IT1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RUNX1-IT1 Gene

Orthologs for RUNX1-IT1 Gene

No data available for Orthologs and Evolution for RUNX1-IT1 Gene

Paralogs for RUNX1-IT1 Gene

No data available for Paralogs for RUNX1-IT1 Gene

Variants for RUNX1-IT1 Gene

Sequence variations from dbSNP and Humsavar for RUNX1-IT1 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs1000029636 -- 35,041,408(+) TGACC(C/T)TTCCC intron-variant, upstream-variant-2KB
rs1003156859 -- 35,040,331(+) TTGAC(C/G)TAAAC intron-variant, upstream-variant-2KB
rs1003515575 -- 35,039,985(+) TTCAT(C/T)ACATG intron-variant, upstream-variant-2KB
rs1003645542 -- 35,039,264(+) CAAAA(C/T)TGTGG intron-variant, nc-transcript-variant
rs1003881885 -- 35,038,877(+) TGTTG(C/T)GGTGG intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for RUNX1-IT1 Gene

Variant ID Type Subtype PubMed ID
nsv482991 CNV gain 15286789
nsv1065948 CNV gain 25217958
nsv1059864 CNV loss 25217958
esv34068 CNV loss 18971310

Relevant External Links for RUNX1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RUNX1-IT1 Gene

Disorders for RUNX1-IT1 Gene

Relevant External Links for RUNX1-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for RUNX1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RUNX1-IT1 Gene

Publications for RUNX1-IT1 Gene

  1. Cell array-based intracellular localization screening reveals novel functional features of human chromosome 21 proteins. (PMID: 16780588) Hu YH … Janitz M (BMC genomics 2006) 3 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60
  4. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M … Chromosome 21 mapping and sequencing consortium (Nature 2000) 3 60

Products for RUNX1-IT1 Gene

Sources for RUNX1-IT1 Gene

Loading form....