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Aliases for RTP3 Gene

Aliases for RTP3 Gene

  • Receptor (Chemosensory) Transporter Protein 3 2 3
  • Transmembrane Protein 7 2 3 4
  • TMEM7 3 4 6
  • Receptor Transporter Protein 3 2 3
  • Z3CXXC3 3 4
  • 3CxxC-Type Zinc Finger Protein 3 4
  • Receptor Transporting Protein 3 3
  • Receptor-Transporting Protein 3 3
  • Zinc Finger, 3CxxC-Type 3 3
  • 3CxxC-Type 3 2
  • Zinc Finger 2
  • LTM1 3

External Ids for RTP3 Gene

Previous Symbols for RTP3 Gene

  • TMEM7

Summaries for RTP3 Gene

GeneCards Summary for RTP3 Gene

RTP3 (Receptor (Chemosensory) Transporter Protein 3) is a Protein Coding gene. An important paralog of this gene is RTP1.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RTP3 Gene

Genomics for RTP3 Gene

Genomic Location for RTP3 Gene

Start:
46,497,491 bp from pter
End:
46,500,949 bp from pter
Size:
3,459 bases
Orientation:
Plus strand

Genomic View for RTP3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RTP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RTP3 Gene

Regulatory Elements for RTP3 Gene

Proteins for RTP3 Gene

  • Protein details for RTP3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BQQ7-RTP3_HUMAN
    Recommended name:
    Receptor-transporting protein 3
    Protein Accession:
    Q9BQQ7
    Secondary Accessions:
    • A2RRP6

    Protein attributes for RTP3 Gene

    Size:
    232 amino acids
    Molecular mass:
    27031 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RTP3 Gene

Proteomics data for RTP3 Gene at MOPED

Post-translational modifications for RTP3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RTP3 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RTP3 Gene

Domains for RTP3 Gene

Gene Families for RTP3 Gene

HGNC:
  • RTP :Receptor transporter proteins

Protein Domains for RTP3 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

RTP3_HUMAN
Family:
  • Belongs to the TMEM7 family.:
    • Q9BQQ7
genes like me logo Genes that share domains with RTP3: view

Function for RTP3 Gene

Gene Ontology (GO) - Molecular Function for RTP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16720576
genes like me logo Genes that share ontologies with RTP3: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RTP3 Gene

Localization for RTP3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RTP3 Gene

Membrane; Single-pass type III membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RTP3 Gene COMPARTMENTS Subcellular localization image for RTP3 gene
Compartment Confidence
cytosol 2
golgi apparatus 1
mitochondrion 1
nucleus 1
peroxisome 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for RTP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IDA 16720576
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with RTP3: view

Pathways for RTP3 Gene

SuperPathways for RTP3 Gene

No Data Available

Interacting Proteins for RTP3 Gene

Gene Ontology (GO) - Biological Process for RTP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001580 detection of chemical stimulus involved in sensory perception of bitter taste IDA 16720576
GO:0006612 protein targeting to membrane IDA 16720576
genes like me logo Genes that share ontologies with RTP3: view

No data available for Pathways by source for RTP3 Gene

Transcripts for RTP3 Gene

mRNA/cDNA for RTP3 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(5) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RTP3 Gene

Receptor (chemosensory) transporter protein 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RTP3 Gene

No ASD Table

Relevant External Links for RTP3 Gene

GeneLoc Exon Structure for
RTP3
ECgene alternative splicing isoforms for
RTP3

Expression for RTP3 Gene

mRNA expression in normal human tissues for RTP3 Gene

mRNA differential expression in normal tissues according to GTEx for RTP3 Gene

This gene is overexpressed in Liver (45.6).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for RTP3 Gene

SOURCE GeneReport for Unigene cluster for RTP3 Gene Hs.196584

mRNA Expression by UniProt/SwissProt for RTP3 Gene

Q9BQQ7-RTP3_HUMAN
Tissue specificity: Expressed predominantly in the liver.
genes like me logo Genes that share expressions with RTP3: view

Orthologs for RTP3 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RTP3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RTP3 36
  • 99.53 (n)
  • 99.07 (a)
RTP3 37
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RTP3 36
  • 82.82 (n)
  • 73.29 (a)
RTP3 37
  • 55 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RTP3 36
  • 80.57 (n)
  • 71.17 (a)
RTP3 37
  • 44 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rtp3 16
Rtp3 37
  • 24 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100496614 36
  • 53.12 (n)
  • 43.87 (a)
zebrafish
(Danio rerio)
Actinopterygii si:ch211-276k2.2 36
  • 47.58 (n)
  • 37.68 (a)
Species with no ortholog for RTP3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RTP3 Gene

ENSEMBL:
Gene Tree for RTP3 (if available)
TreeFam:
Gene Tree for RTP3 (if available)

Paralogs for RTP3 Gene

Paralogs for RTP3 Gene

Selected SIMAP similar genes for RTP3 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with RTP3: view

Variants for RTP3 Gene

Sequence variations from dbSNP and Humsavar for RTP3 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs867619 -- 46,496,260(+) GAAAC(C/G)CTTTT upstream-variant-2KB
rs867620 -- 46,496,359(+) AATGC(C/T)AAAGT upstream-variant-2KB
rs883738 -- 46,496,689(-) CAAGG(A/G)GACCC upstream-variant-2KB
rs883739 -- 46,496,528(-) gcaat(A/C)agata upstream-variant-2KB
rs883740 -- 46,497,025(-) CTCCT(C/T)GGCAG upstream-variant-2KB

Relevant External Links for RTP3 Gene

HapMap Linkage Disequilibrium report
RTP3

No data available for Structural Variations from Database of Genomic Variants (DGV) for RTP3 Gene

Disorders for RTP3 Gene

Relevant External Links for RTP3

Genetic Association Database (GAD)
RTP3
Human Genome Epidemiology (HuGE) Navigator
RTP3
genes like me logo Genes that share disorders with RTP3: view

No data available for UniProtKB/Swiss-Prot for RTP3 Gene

Publications for RTP3 Gene

  1. The transcriptional map of the common eliminated region 1 (C3CER1) in 3p21.3. (PMID: 11896456) Kiss H. … Dumanski J.P. (Eur. J. Hum. Genet. 2002) 3 4 23
  2. RTP family members induce functional expression of mammalian odorant receptors. (PMID: 15550249) Saito H. … Matsunami H. (Cell 2004) 2 3 4
  3. Genome-wide association study for femoral neck bone geometry. (PMID: 20175129) Zhao L.J. … Deng H.W. (J. Bone Miner. Res. 2010) 3 23 49
  4. Inherited ACTH insensitivity illuminates the mechanisms of ACTH action. (PMID: 16271481) Clark A.J. … Huebner A. (Trends Endocrinol. Metab. 2005) 2 3
  5. Members of RTP and REEP gene families influence functional bitter taste receptor expression. (PMID: 16720576) Behrens M. … Meyerhof W. (J. Biol. Chem. 2006) 2 3

Products for RTP3 Gene

Sources for RTP3 Gene

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