Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RTP3 Gene

Aliases for RTP3 Gene

  • Receptor Transporter Protein 3 2 3 5
  • Transmembrane Protein 7 2 3 4
  • Receptor (Chemosensory) Transporter Protein 3 2 3
  • 3CxxC-Type Zinc Finger Protein 3 3 4
  • Zinc Finger, 3CxxC-Type 3 2 3
  • Z3CXXC3 3 4
  • TMEM7 3 4
  • Receptor-Transporting Protein 3 3
  • LTM1 3

External Ids for RTP3 Gene

Previous HGNC Symbols for RTP3 Gene

  • TMEM7

Previous GeneCards Identifiers for RTP3 Gene

  • GC03P046515

Summaries for RTP3 Gene

GeneCards Summary for RTP3 Gene

RTP3 (Receptor Transporter Protein 3) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Olfactory Signaling Pathway. An important paralog of this gene is RTP4.

UniProtKB/Swiss-Prot for RTP3 Gene

  • Promotes functional cell surface expression of the bitter taste receptors TAS2R16 and TAS2R43.

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RTP3 Gene

Genomics for RTP3 Gene

Regulatory Elements for RTP3 Gene

Enhancers for RTP3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G046549 1.6 FANTOM5 ENCODE dbSUPER 12.2 +52.2 52204 1.3 PKNOX1 ATF1 ARNT ETS1 TCF12 ZNF766 CBX5 GATA2 NCOA1 REST TDGF1 RTP3 LTF LRRC2-AS1 CCR2 LOC105377070
GH03G046404 1.8 FANTOM5 ENCODE dbSUPER 10.3 -90.9 -90894 4.8 HDGF PKNOX1 CREB3L1 ARNT ZNF766 CBX5 FOS KLF13 JUNB ZNF592 CCRL2 CCR1 CCR2 RTP3 CCR5 LOC102724297 LIMD1 LRRC2 TDGF1 PRSS45
GH03G046628 1.5 FANTOM5 Ensembl ENCODE 10.6 +132.0 131969 2.4 HDGF HDAC1 ATF1 CBX3 RB1 CREB3L1 NFXL1 ZBTB40 RAD21 CBX5 LTF ALS2CL TDGF1 RTP3 PRSS45 CCDC12 GC03P046626 GC03P046650
GH03G046564 1.3 FANTOM5 ENCODE 11.4 +68.5 68519 2.8 PKNOX1 MLX ARID4B ZNF48 YY1 ZNF766 FOS ZNF623 ZNF518A PBX2 LRRC2 LTF RTP3 ENSG00000260236 PRSS50 PRSS46 CCRL2 SCAP LRRC2-AS1 TDGF1
GH03G046556 1.2 ENCODE dbSUPER 12.2 +60.5 60513 3.8 HDGF PKNOX1 ATF1 FOXA2 CREB3L1 ARNT ARID4B DMAP1 YY1 GATA2 LRRC2 LRRC2-AS1 RTP3 LTF CCR2 TDGF1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RTP3 on UCSC Golden Path with GeneCards custom track

Genomic Location for RTP3 Gene

Chromosome:
3
Start:
46,497,491 bp from pter
End:
46,500,949 bp from pter
Size:
3,459 bases
Orientation:
Plus strand

Genomic View for RTP3 Gene

Genes around RTP3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RTP3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RTP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RTP3 Gene

Proteins for RTP3 Gene

  • Protein details for RTP3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BQQ7-RTP3_HUMAN
    Recommended name:
    Receptor-transporting protein 3
    Protein Accession:
    Q9BQQ7
    Secondary Accessions:
    • A2RRP6

    Protein attributes for RTP3 Gene

    Size:
    232 amino acids
    Molecular mass:
    27031 Da
    Quaternary structure:
    • Interacts with TAS2R16.

neXtProt entry for RTP3 Gene

Post-translational modifications for RTP3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RTP3 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RTP3 Gene

Domains & Families for RTP3 Gene

Protein Domains for RTP3 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for RTP3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BQQ7

UniProtKB/Swiss-Prot:

RTP3_HUMAN :
  • Belongs to the TMEM7 family.
Family:
  • Belongs to the TMEM7 family.
genes like me logo Genes that share domains with RTP3: view

Function for RTP3 Gene

Molecular function for RTP3 Gene

UniProtKB/Swiss-Prot Function:
Promotes functional cell surface expression of the bitter taste receptors TAS2R16 and TAS2R43.

Gene Ontology (GO) - Molecular Function for RTP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16720576
GO:0031849 olfactory receptor binding IBA --
genes like me logo Genes that share ontologies with RTP3: view
genes like me logo Genes that share phenotypes with RTP3: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RTP3 Gene

Localization for RTP3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RTP3 Gene

Membrane; Single-pass type III membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RTP3 gene
Compartment Confidence
cytosol 2
plasma membrane 1
mitochondrion 1
peroxisome 1
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for RTP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IDA 16720576
GO:0009986 cell surface IBA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with RTP3: view

Pathways & Interactions for RTP3 Gene

genes like me logo Genes that share pathways with RTP3: view

Pathways by source for RTP3 Gene

Interacting Proteins for RTP3 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://version10.5.string-db.org/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000296142%0d%0a9606.ENSP00000359899%0d%0a9606.ENSP00000377948%0d%0a
Selected Interacting proteins: ENSP00000296142 Q9BQQ7-RTP3_HUMAN for RTP3 Gene via STRING IID

Gene Ontology (GO) - Biological Process for RTP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001580 detection of chemical stimulus involved in sensory perception of bitter taste IDA 16720576
GO:0006612 protein targeting to membrane IDA 16720576
GO:0051205 protein insertion into membrane IBA --
genes like me logo Genes that share ontologies with RTP3: view

No data available for SIGNOR curated interactions for RTP3 Gene

Drugs & Compounds for RTP3 Gene

No Compound Related Data Available

Transcripts for RTP3 Gene

mRNA/cDNA for RTP3 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(5) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RTP3 Gene

Receptor (chemosensory) transporter protein 3:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RTP3 Gene

No ASD Table

Relevant External Links for RTP3 Gene

GeneLoc Exon Structure for
RTP3
ECgene alternative splicing isoforms for
RTP3

Expression for RTP3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RTP3 Gene

mRNA differential expression in normal tissues according to GTEx for RTP3 Gene

This gene is overexpressed in Liver (x45.6).

Protein differential expression in normal tissues from HIPED for RTP3 Gene

This gene is overexpressed in Liver (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for RTP3 Gene



Protein tissue co-expression partners for RTP3 Gene

NURSA nuclear receptor signaling pathways regulating expression of RTP3 Gene:

RTP3

SOURCE GeneReport for Unigene cluster for RTP3 Gene:

Hs.196584

mRNA Expression by UniProt/SwissProt for RTP3 Gene:

Q9BQQ7-RTP3_HUMAN
Tissue specificity: Expressed predominantly in adult liver (PubMed:11896456, PubMed:17693185). Expressed in testis (PubMed:16720576, PubMed:17693185). Also expressed in kidney, lung and fetal liver (PubMed:17693185). Low levels in heart, thyroid, adrenal gland, pancreas, ovary, prostate, skin, plasma leukocytes, bone marrow and fetal brain (PubMed:17693185). Not detected in brain, spleen, colon, small intestine, skeletal muscle, stomach, placenta, salivary gland and uterus (PubMed:17693185).
genes like me logo Genes that share expression patterns with RTP3: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RTP3 Gene

Orthologs for RTP3 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RTP3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RTP3 34 35
  • 99.53 (n)
cow
(Bos Taurus)
Mammalia RTP3 34 35
  • 82.82 (n)
dog
(Canis familiaris)
Mammalia RTP3 34 35
  • 80.57 (n)
mouse
(Mus musculus)
Mammalia Rtp3 35
  • 24 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100496614 34
  • 53.12 (n)
zebrafish
(Danio rerio)
Actinopterygii si:ch211-276k2.2 34
  • 47.58 (n)
Species where no ortholog for RTP3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RTP3 Gene

ENSEMBL:
Gene Tree for RTP3 (if available)
TreeFam:
Gene Tree for RTP3 (if available)

Paralogs for RTP3 Gene

Paralogs for RTP3 Gene

(4) SIMAP similar genes for RTP3 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with RTP3: view

Variants for RTP3 Gene

Sequence variations from dbSNP and Humsavar for RTP3 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000433942 -- 46,496,880(+) ATGTC(A/G)TTTTG upstream-variant-2KB
rs1001407635 -- 46,499,377(+) AAGGA(A/G)CATAT intron-variant
rs1002002127 -- 46,500,793(+) GAATG(C/T)CTATT reference, missense
rs1002086287 -- 46,496,117(+) TGCCT(C/T)GTTTG upstream-variant-2KB
rs1002121092 -- 46,501,394(+) TCTCA(A/C)ACAGT downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for RTP3 Gene

Variant ID Type Subtype PubMed ID
nsv1013306 CNV gain 25217958
nsv1014624 CNV loss 25217958

Variation tolerance for RTP3 Gene

Residual Variation Intolerance Score: 38.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.23; 5.05% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RTP3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RTP3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RTP3 Gene

Disorders for RTP3 Gene

Relevant External Links for RTP3

Genetic Association Database (GAD)
RTP3
Human Genome Epidemiology (HuGE) Navigator
RTP3
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RTP3

No disorders were found for RTP3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RTP3 Gene

Publications for RTP3 Gene

  1. Genome-wide association study for femoral neck bone geometry. (PMID: 20175129) Zhao L.J. … Deng H.W. (J. Bone Miner. Res. 2010) 3 22 46 64
  2. Members of RTP and REEP gene families influence functional bitter taste receptor expression. (PMID: 16720576) Behrens M. … Meyerhof W. (J. Biol. Chem. 2006) 2 3 4 64
  3. RTP family members induce functional expression of mammalian odorant receptors. (PMID: 15550249) Saito H. … Matsunami H. (Cell 2004) 2 3 4 64
  4. The transcriptional map of the common eliminated region 1 (C3CER1) in 3p21.3. (PMID: 11896456) Kiss H. … Dumanski J.P. (Eur. J. Hum. Genet. 2002) 3 4 22 64
  5. The interferon-alpha responsive gene TMEM7 suppresses cell proliferation and is downregulated in human hepatocellular carcinoma. (PMID: 17693185) Zhou X. … Imreh S. (Cancer Genet. Cytogenet. 2007) 3 4 64

Products for RTP3 Gene

Sources for RTP3 Gene

Content
Loading form....